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Employment (1)

University of Neuchâtel: Neuchâtel, CH

2018-05-01 to present | Post doctoral researcher (Biology Institute)
Employment
Source: Self-asserted source
Thomas Badet

Works (15)

A systematic screen for co-option of transposable elements across the fungal kingdom

Mobile DNA
2024-01-20 | Journal article | Data curation, Formal analysis
Part of ISSN: 1759-8753
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

Recent reactivation of a pathogenicity-associated transposable element is associated with major chromosomal rearrangements in a fungal wheat pathogen

Nucleic Acids Research
2023-12-24 | Journal article | Conceptualization, Formal analysis, Writing - original draft, Writing - review & editing
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen

BMC Genomics
2021-12 | Journal article | Formal analysis, Visualization
Part of ISSN: 1471-2164
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen

eLife
2021-09-16 | Journal article | Formal analysis
Part of ISSN: 2050-084X
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

Machine-learning predicts genomic determinants of meiosis-driven structural variation in a eukaryotic pathogen

Nature Communications
2021-06-10 | Journal article | Conceptualization, Formal analysis, Visualization, Writing - original draft, Writing - review & editing
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

Emergence and diversification of a highly invasive chestnut pathogen lineage across southeastern Europe

eLife
2021-03-05 | Journal article | Formal analysis, Visualization, Writing - review & editing
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici

BMC Biology
2020-12 | Journal article | Formal analysis, Visualization, Writing - original draft, Writing - review & editing
Part of ISSN: 1741-7007
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

The rise and fall of genes: origins and functions of plant pathogen pangenomes

Current Opinion in Plant Biology
2020-08 | Journal article | Visualization, Writing - original draft, Writing - review & editing
Part of ISSN: 1369-5266
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

Stress-Driven Transposable Element De-repression Dynamics and Virulence Evolution in a Fungal Pathogen

Molecular Biology and Evolution
2020-01-01 | Journal article | Formal analysis, Visualization, Writing - original draft, Writing - review & editing
Part of ISSN: 0737-4038
Part of ISSN: 1537-1719
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

Expression polymorphism at the ARPC4 locus links the actin cytoskeleton with quantitative disease resistance to Sclerotinia sclerotiorumin Arabidopsis thaliana

New Phytologist
2019-04 | Journal article | Conceptualization, Formal analysis, Writing - original draft
Part of ISSN: 0028-646X
Part of ISSN: 1469-8137
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

Parallel evolution of the POQR prolyl oligo peptidase gene conferring plant quantitative disease resistance

PLOS Genetics
2017-12-22 | Journal article | Formal analysis, Writing - original draft
Part of ISSN: 1553-7404
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

Codon optimization underpins generalist parasitism in fungi

eLife
2017-02-03 | Journal article | Conceptualization, Data curation, Formal analysis, Writing - original draft
Part of ISSN: 2050-084X
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

Emerging Trends in Molecular Interactions between Plants and the Broad Host Range Fungal Pathogens Botrytis cinerea and Sclerotinia sclerotiorum

Frontiers in Plant Science
2016-03-31 | Journal article | Writing - original draft
Part of ISSN: 1664-462X
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

Common protein sequence signatures associate with Sclerotinia borealis lifestyle and secretion in fungal pathogens of the Sclerotiniaceae

Frontiers in Plant Science
2015-09-24 | Journal article | Conceptualization, Data curation, Formal analysis, Visualization, Writing - original draft
Part of ISSN: 1664-462X
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet

Resistance to phytopathogense tutti quanti: placing plant quantitative disease resistance on the map

Molecular Plant Pathology
2014-06 | Journal article | Writing - original draft
Part of ISSN: 1464-6722
Contributors: Thomas Badet
Source: Self-asserted source
Thomas Badet