Personal information

Australia

Activities

Employment (3)

Walter and Eliza Hall Institute of Medical Research: Melbourne, VIC, AU

2020-07-17 to present | Senior Research Officer (Bioinformatics Division)
Employment
Source: Self-asserted source
Ahmed Mohamed

QIMR Berghofer Medical Research Institute: Herston, QLD, AU

2018-01-08 to 2020-07-15 | Research Officer (Precision & systems biomedicine)
Employment
Source: Self-asserted source
Ahmed Mohamed

University of Queensland: Brisbane, QLD, AU

2017-02-13 to 2018-01-07 | Postdoctoral Fellow (UQDI)
Employment
Source: Self-asserted source
Ahmed Mohamed

Education and qualifications (3)

Kyoto University: Kyoto, Kyoto, JP

2012-04-01 to 2016-03-23 | Ph.D (Graduate school of Pharmaceutical sciences)
Education
Source: Self-asserted source
Ahmed Mohamed

Osaka University: Suita, Osaka, JP

2008-04-01 to 2012-03-22 | M.Sc. (Graduate school of pharmaceutical sciences)
Education
Source: Self-asserted source
Ahmed Mohamed

Suez Canal University Faculty of Pharmacy: Ismailia, Ismailia, EG

2002-09-01 to 2007-07-26 | B.Sc. (Faculty of Pharmacy)
Education
Source: Self-asserted source
Ahmed Mohamed

Works (26)

mastR: An R Package for Automated Identification of Tissue-Specific Gene Signatures in Multi-Group Differential Expression Analysis

2025-03-13 | Other
Contributors: Jinjin Chen; Ahmed Mohamed; Dharmesh D. Bhuva; Melissa J. Davis; Chin Wee Tan
Source: check_circle
Crossref

Integrative temporal multi-omics reveals uncoupling of transcriptome and proteome during human T cell activation

npj Systems Biology and Applications
2024-02-28 | Journal article
Contributors: Harshi Weerakoon; Ahmed Mohamed; Yide Wong; Jinjin Chen; Bhagya Senadheera; Oscar Haigh; Thomas S. Watkins; Stephen Kazakoff; Pamela Mukhopadhyay; Jason Mulvenna et al.
Source: check_circle
Crossref

standR: spatial transcriptomic analysis for GeoMx DSP data

Nucleic Acids Research
2024-01-11 | Journal article
Contributors: Ning Liu; Dharmesh D Bhuva; Ahmed Mohamed; Micah Bokelund; Arutha Kulasinghe; Chin Wee Tan; Melissa J Davis
Source: check_circle
Crossref

vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis

Nucleic Acids Research
2023-07-05 | Journal article
Contributors: Ahmed Mohamed; Dharmesh D Bhuva; Sam Lee; Ning Liu; Chin Wee Tan; Melissa J Davis
Source: check_circle
Crossref

standR: a Bioconductor package for analysing transcriptomic Nanostring GeoMx DSP data

2023-04-24 | Preprint
Contributors: Ning Liu; Dharmesh D. Bhuva; Ahmed Mohamed; Micah Bokelund; Arutha Kulasinghe; Chin Wee Tan; Melissa J Davis
Source: check_circle
Crossref

Rapid Detection of Recurrent Non-Muscle Invasive Bladder Cancer in Urine Using ATR-FTIR Technology

Molecules
2022-12 | Journal article | Author
Contributors: Abdullah I. El-Falouji; Dalia M. Sabri; Naira M. Lotfi; Doaa M. Medany; Samar A. Mohamed; Mai Alaa-eldin; Amr Mounir Selim; Asmaa El Leithy; Haitham Kalil; Ahmed El-Tobgy et al.
Source: check_circle
Multidisciplinary Digital Publishing Institute

Elevation of fatty acid desaturase 2 in esophageal adenocarcinoma increases polyunsaturated lipids and may exacerbate bile acid‐induced DNA damage

Clinical and Translational Medicine
2022-05 | Journal article
Contributors: Jeffrey Molendijk; Cathryn M. Kolka; Henry Cairns; Sandra Brosda; Ahmed Mohamed; Alok K. Shah; Ian Brown; Mark P. Hodson; Thomas Hennessy; Guanghao Liu et al.
Source: check_circle
Crossref

Skin Cancer-Associated S. aureus Strains Can Induce DNA Damage in Human Keratinocytes by Downregulating DNA Repair and Promoting Oxidative Stress

Cancers
2022-04-25 | Journal article
Contributors: Annika Krueger; Ahmed Mohamed; Cathryn M. Kolka; Thomas Stoll; Julian Zaugg; Richard Linedale; Mark Morrison; H. Peter Soyer; Philip Hugenholtz; Ian H. Frazer et al.
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Crossref
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Preferred source (of 2)‎

Differential Regulation of Lacto-/Neolacto- Glycosphingolipid Biosynthesis Pathway Reveals Transcription Factors as Potential Candidates in Triple-Negative Breast Cancer

Cancers
2021-07-02 | Journal article
Contributors: Ruichao Zeng; Ahmed Mohamed; Kum Kum Khanna; Michelle M. Hill
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Crossref
grade
Preferred source (of 2)‎

LipidSuite: interactive web server for lipidomics differential and enrichment analysis

Nucleic Acids Research
2021-07-02 | Journal article
Contributors: Ahmed Mohamed; Michelle M Hill
Source: check_circle
Crossref

Candidate Glycoprotein Biomarkers for Canine Visceral Hemangiosarcoma and Validation Using Semi-Quantitative Lectin/Immunohistochemical Assays

Veterinary Sciences
2021-02-27 | Journal article
Contributors: Patharee Oungsakul; Eunju Choi; Alok K. Shah; Ahmed Mohamed; Caroline O’Leary; David Duffy; Michelle M. Hill; Helle Bielefeldt-Ohmann
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Crossref
grade
Preferred source (of 2)‎

lipidr: A Software Tool for Data Mining and Analysis of Lipidomics Datasets

Journal of Proteome Research
2020-07-02 | Journal article
Contributors: Ahmed Mohamed; Jeffrey Molendijk; Michelle M. Hill
Source: check_circle
Crossref

Chronic High-Fat Diet Induces Early Barrett’s Esophagus in Mice through Lipidome Remodeling

Biomolecules
2020-05-16 | Journal article
Contributors: Jeffrey Molendijk; Thi-My-Tam Nguyen; Ian Brown; Ahmed Mohamed; Yenkai Lim; Johanna Barclay; Mark P. Hodson; Thomas P. Hennessy; Lutz Krause; Mark Morrison et al.
Source: check_circle
Crossref

Concurrent lipidomics and proteomics on malignant plasma cells from multiple myeloma patients: Probing the lipid metabolome

PLOS ONE
2020-01-08 | Journal article
Contributors: Ahmed Mohamed; John Matthew Koomen; Joel Collins; Hui Jiang; Jeffrey Molendijk; Thomas Stoll; Federico Torta; Markus R. Wenk; Robert J. Bird; Paula Marlton et al.
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Crossref
grade
Preferred source (of 3)‎

Discovery and Qualification of Serum Protein Biomarker Candidates for Cholangiocarcinoma Diagnosis

Journal of Proteome Research
2019 | Journal article
Contributors: Duangkumpha, Kassaporn; Stoll, Thomas; Phetcharaburanin, Jutarop; Yongvanit, Puangrat; Thanan, Raynoo; Techasen, Anchalee; Namwat, Nisana; Khuntikeo, Narong; Chamadol, Nittaya; Roytrakul, Sittiruk et al.
Source: check_circle
Web of Science Researcher Profile Sync

Urine proteomics study reveals potential biomarkers for the differential diagnosis of cholangiocarcinoma and periductal fibrosis

Plos One
2019 | Journal article
Contributors: Duangkumpha, Kassaporn; Stoll, Thomas; Phetcharaburanin, Jutarop; Yongvanit, Puangrat; Thanan, Raynoo; Techasen, Anchalee; Namwat, Nisana; Khuntikeo, Narong; Chamadol, Nittaya; Roytrakul, Sittiruk et al.
Source: check_circle
Web of Science Researcher Profile Sync

Urine proteomics study reveals potential biomarkers for the differential diagnosis of cholangiocarcinoma and periductal fibrosis

OpenAlex
2019-08-19 | Other
Contributors: Kassaporn Duangkumpha; Thomas Stoll; Jutarop Phetcharaburanin; Puangrat Yongvanit; Raynoo Thanan; Anchalee Techasen; Nisana Namwat; Narong Khuntikeo; Nittaya Chamadol; Sittiruk Roytrakul et al.
Source: check_circle
DataCite

Urine proteomics study reveals potential biomarkers for the differential diagnosis of cholangiocarcinoma and periductal fibrosis

OpenAlex
2019-08-19 | Other
Contributors: Kassaporn Duangkumpha; Thomas Stoll; Jutarop Phetcharaburanin; Puangrat Yongvanit; Raynoo Thanan; Anchalee Techasen; Nisana Namwat; Narong Khuntikeo; Nittaya Chamadol; Sittiruk Roytrakul et al.
Source: check_circle
DataCite

Advances and challenges in understanding the role of the lipid raft proteome in human health

Expert Review of Proteomics
2018-11-07 | Journal article
Part of ISSN: 1478-9450
Contributors: Ahmed Mohamed; Harley Robinson; Pablo Joaquin Erramouspe; Michelle M Hill
Source: Self-asserted source
Ahmed Mohamed via Crossref Metadata Search

RaftProt V2: understanding membrane microdomain function through lipid raft proteomes

Nucleic Acids Research
2018-10 | Journal article
Part of ISSN: 0305-1048
Contributors: Ahmed Mohamed; Anup D Shah; David Chen; Michelle M Hill
Source: Self-asserted source
Ahmed Mohamed via Crossref Metadata Search

Iron Inhibits the Secretion of Apolipoprotein E in Cultured Human Adipocytes.

Cellular and molecular gastroenterology and hepatology
2018-04-16 | Journal article
Source: Self-asserted source
Ahmed Mohamed

Current status and prospects of computational resources for natural product dereplication: a review

Briefings in Bioinformatics
2016 | Journal article
Contributors: Ahmed Mohamed; Canh Hao Nguyen; Hiroshi Mamitsuka
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Web of Science Researcher Profile Sync

NMRPro: an integrated web component for interactive processing and visualization of NMR spectra

Bioinformatics
2016 | Journal article
Contributors: Ahmed Mohamed; Canh Hao Nguyen; Hiroshi Mamitsuka
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Web of Science Researcher Profile Sync

Development of computational analysis tools for natural products research and metabolomics

Kyoto University
2016-03-23 | Dissertation or Thesis
Source: Self-asserted source
Ahmed Mohamed

NetPathMiner: R/Bioconductor package for network path mining through gene expression

Bioinformatics
2014 | Journal article
Contributors: Ahmed Mohamed; Timothy Hancock; Canh Hao Nguyen; Hiroshi Mamitsuka
Source: check_circle
Web of Science Researcher Profile Sync

MetPathMiner: R/Bioconductor package for network path mining through gene expression

The 13th Annual International Workshop on Bioinformatics and Systems Biology (IBSB)
2013-07-31 | Conference abstract
Source: Self-asserted source
Ahmed Mohamed