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Employment (4)

University of Warwick: Coventry, Coventry, GB

2013-05-01 to present | Professor (Warwick Medical School)
Employment
Source: Self-asserted source
Mark Achtman

University College Cork: Cork, IE

2007-06-01 to 2013-05-15 | Professor/SFI PI (Environmental Research Institute/Microbiology)
Employment
Source: Self-asserted source
Mark Achtman

Max-Planck Institut for infection Biology: Berlin, DE

2000 to 2008 | Research group leader (Meyer)
Employment
Source: Self-asserted source
Mark Achtman

Max-Planck Institute for molecular Genetics: Berlin, DE

1972 to 2000 | Research group leader (Trautner)
Employment
Source: Self-asserted source
Mark Achtman

Education and qualifications (3)

University of California Berkeley: Berkeley, CA, US

1964 to 1969 | PhD (Molecular Biology)
Education
Source: Self-asserted source
Mark Achtman

University of Manitoba: Winnipeg, MB, CA

1963 to 1964 | M.Sc. (Bacteriology & Immunology)
Education
Source: Self-asserted source
Mark Achtman

McGill University: Montreal, QC, CA

1959 to 1963 | B.Sc. hon (Bacteriology & Immunology)
Education
Source: Self-asserted source
Mark Achtman

Professional activities (1)

Royal Society: London, London, GB

2015-07-07 | Fellow
Distinction
Source: Self-asserted source
Mark Achtman

Funding (3)

Deep evolutionary history of bacterial pathogens

2016-09 to 2021-09 | Grant
Wellcome Trust (London, GB)
GRANT_NUMBER:

202792/Z/16/Z
Source: Self-asserted source
Mark Achtman

EnteroBase: A Powerful, User-Friendly Online Resource for Analyzing and Visualizing Genomic Variation within Escherichia coli and Salmonella enterica

2014-07-31 to 2019-07-30 | Grant
Biotechnology and Biological Sciences Research Council (Swindon, GB)
GRANT_NUMBER: BB/L020319/1
GRANT_NUMBER: BB/L020319/1
Source: Self-asserted source
Mark Achtman via DimensionsWizard
grade
Preferred source (of 2)‎

Microbial Phylogeography

2007-04 to 2012-12 | Grant
Science Foundation Ireland (Dublin, IE)
GRANT_NUMBER:

05/FE1/B882
Source: Self-asserted source
Mark Achtman

Works (50 of 232)

Items per page:
Page 1 of 5

EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations

Philosophical Transactions of the Royal Society B: Biological Sciences
2022-10-10 | Journal article
DOI: 10.1098/rstb.2021.0240
Contributors: Mark Achtman; Zhemin Zhou; Jane Charlesworth; Laura Baxter
Source: check_circle
Crossref

Genomic population structures of microbial pathogens

Philosophical Transactions of the Royal Society B: Biological Sciences
2022-10-10 | Journal article
DOI: 10.1098/rstb.2021.0230
Contributors: Kathryn E. Holt; David M. Aanensen; Mark Achtman
Source: check_circle
Crossref

EnteroBase: Hierarchical clustering of 100,000s of bacterial genomes into species/sub-species and populations

2022-01-11 | Preprint
DOI: 10.1101/2022.01.11.475882
Contributors: Mark Achtman; Zhemin Zhou; Jane Charlesworth; Laura Baxter
Source: check_circle
Crossref

HierCC: a multi-level clustering scheme for population assignments based on core genome MLST

Bioinformatics
2021-10-25 | Journal article
DOI: 10.1093/bioinformatics/btab234
Contributors: Zhemin Zhou; Jane Charlesworth; Mark Achtman; Janet Kelso
Source: check_circle
Crossref

Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature

PLOS Genetics
2021-09-27 | Journal article
DOI: 10.1371/journal.pgen.1009820
Contributors: Mark Achtman; Jay C. D. Hinton; Frederik Van den Broeck; Kerry K. Cooper; Philippe Lemey; Craig T. Parker; Zhemin Zhou
Source: check_circle
Crossref

Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project

Wellcome Open Research
2021-02-01 | Journal article
DOI: 10.12688/wellcomeopenres.16291.2
DOI: 10.12688/wellcomeopenres.16291.1
Part of ISSN: 2398-502X
Contributors: Mark Achtman; Zhemin Zhou; Nabil-Fareed Alikhan; William Tyne; Julian Parkhill; Martin Cormican; Chien-Shun Chiou; Mia Torpdahl; Eva Litrup; Deirdre M. Prendergast et al.
Source: Self-asserted source
Mark Achtman
grade
Preferred source (of 3)‎

HierCC: A multi-level clustering scheme for population assignments based on core genome MLST

2020-11-26 | Preprint
DOI: 10.1101/2020.11.25.397539
Contributors: Zhemin Zhou; Jane Charlesworth; Mark Achtman
Source: check_circle
Crossref

Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on Streptococcus mutans and Streptococcus sobrinus

Philosophical Transactions of the Royal Society B: Biological Sciences
2020-11-23 | Journal article
DOI: 10.1098/rstb.2019.0573
Contributors: Mark Achtman; Zhemin Zhou
Source: check_circle
Crossref

Accurate reconstruction of bacterial pan- and core genomes with PEPPAN

Genome Research
2020-11-14 | Journal article
DOI: 10.1101/gr.260828.120
Contributors: Zhemin Zhou; Jane Charlesworth; Mark Achtman
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

BlastFrost: Fast querying of 100,000s of bacterial genomes in Bifrost graphs

2020-01-23 | Preprint
DOI: 10.1101/2020.01.21.914168
Contributors: Nina Luhmann; Guillaume Holley; Mark Achtman
Source: check_circle
Crossref

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

Genome Research
2020-01-06 | Journal article
DOI: 10.1101/gr.251678.119
DOI: 10.1101/613554
Contributors: Zhemin Zhou; Nabil-Fareed Alikhan; Khaled Mohamed; Yulei Fan; Mark Achtman
Source: Self-asserted source
Mark Achtman
grade
Preferred source (of 3)‎

Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on Streptococcus mutans and Streptococcus sobrinus

2019-11-15 | Other
DOI: 10.1101/842542
Contributors: Mark Achtman; Zhemin Zhou
Source: check_circle
Crossref

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

Genome Research
2018-09-26 | Journal article
DOI: 10.1101/gr.232397.117
Contributors: Zhemin Zhou; Nabil-Fareed Alikhan; Martin J. Sergeant; Nina Luhmann; Cátia Vaz; Alexandre P. Francisco; João André Carriço; Mark Achtman
Source: check_circle
Crossref

A genomic overview of the population structure of Salmonella

PLOS Genetics
2018-04-05 | Journal article
DOI: 10.1371/journal.pgen.1007261
Contributors: Nabil-Fareed Alikhan; Josep Casadesús; Zhemin Zhou; Martin J. Sergeant; Mark Achtman
Source: check_circle
Crossref

Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes

2017-11-07 | Other
DOI: 10.1101/215707
Contributors: Zhemin Zhou; Nina Luhmann; Nabil-Fareed Alikhan; Christopher Quince; Mark Achtman
Source: check_circle
Crossref

How old are bacterial pathogens?

Proceedings of the Royal Society B: Biological Sciences
2016-08-17 | Journal article
DOI: 10.1098/rspb.2016.0990
Contributors: Mark Achtman
Source: check_circle
Crossref

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

Genome research
2013 | Journal article
Source: Self-asserted source
Mark Achtman

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis

Proceedings of the National Academy of Sciences
2013 | Journal article
Source: Self-asserted source
Mark Achtman

Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona

PLoS Genet
2013 | Journal article
Source: Self-asserted source
Mark Achtman

Population structures in the SARA and SARB reference collections of Salmonella enterica according to MLST, MLEE and microarray hybridization

Infection, Genetics and Evolution
2013 | Journal article
Source: Self-asserted source
Mark Achtman

Age of the association between Helicobacter pylori and man

PLoS pathog
2012 | Journal article
Source: Self-asserted source
Mark Achtman

CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections

PloS one
2012 | Journal article
Source: Self-asserted source
Mark Achtman

Genome sequences and phylogenetic analysis of K88-and F18-positive porcine enterotoxigenic Escherichia coli

Journal of bacteriology
2012 | Journal article
Source: Self-asserted source
Mark Achtman

Genomic analysis uncovers a phenotypically diverse but genetically homogeneous Escherichia coli ST131 clone circulating in unrelated urinary tract infections

Journal of antimicrobial chemotherapy
2012 | Journal article
Source: Self-asserted source
Mark Achtman

Insights from genomic comparisons of genetically monomorphic bacterial pathogens

Philosophical Transactions of the Royal Society B: Biological Sciences
2012 | Journal article
Source: Self-asserted source
Mark Achtman

Multilocus sequence typing as a replacement for serotyping in Salmonella enterica

PLoS Pathog
2012 | Journal article
Source: Self-asserted source
Mark Achtman

Population genetic structure of 4, 12: a:-Salmonella enterica from harbour porpoises

Applied and Environmental Microbiology
2012 | Journal article
Source: Self-asserted source
Mark Achtman

Population structure of Helicobacter pylori among ethnic groups in Cameroon

International Journal of Medical Microbiology
2012 | Journal article
Source: Self-asserted source
Mark Achtman

Transforming microbial genotyping: a robotic pipeline for genotyping bacterial strains

2012 | Journal article
Source: Self-asserted source
Mark Achtman

A broad brush, global overview of bacterial sexuality

PLoS Genet
2011 | Journal article
Source: Self-asserted source
Mark Achtman

Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings

Journal of antimicrobial chemotherapy
2011 | Journal article
Source: Self-asserted source
Mark Achtman

Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar

2011 | Journal article
Source: Self-asserted source
Mark Achtman

Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing

Environmental microbiology
2011 | Journal article
Source: Self-asserted source
Mark Achtman

Recombination and population structure in Salmonella enterica

PLoS Genet
2011 | Journal article
Source: Self-asserted source
Mark Achtman

Revival of Seeliger's historical ‘Special Listeria Culture Collection’

Environmental microbiology
2011 | Journal article
Source: Self-asserted source
Mark Achtman

Salmonella enterica Serotype Typhi with nonclassical quinolone resistance phenotype

Emerging infectious diseases
2011 | Journal article
Source: Self-asserted source
Mark Achtman

A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island

2010 | Journal article
Source: Self-asserted source
Mark Achtman

A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A

Journal of antimicrobial chemotherapy
2010 | Journal article
Source: Self-asserted source
Mark Achtman

Distinct clones of Yersinia pestis caused the black death

PLoS Pathog
2010 | Journal article
Source: Self-asserted source
Mark Achtman

Ethnic and geographic differentiation of Helicobacter pylori within Iran

PloS one
2010 | Journal article
Source: Self-asserted source
Mark Achtman

Evolution and population structure of Salmonella enterica serovar Newport

Journal of bacteriology
2010 | Journal article
Source: Self-asserted source
Mark Achtman

Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium

Journal of bacteriology
2010 | Journal article
Source: Self-asserted source
Mark Achtman

Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families

PLoS Genet
2010 | Journal article
Source: Self-asserted source
Mark Achtman

POPULATION STRUCTURE AND EVOLUTIONARY HISTORY OF YERSINIA PESTIS IN NORTH AMERICA

VECTOR-BORNE AND ZOONOTIC DISEASES
2010 | Conference paper
Source: Self-asserted source
Mark Achtman

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

Nature genetics
2010 | Journal article
Source: Self-asserted source
Mark Achtman

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

Genome research
2009 | Journal article
Source: Self-asserted source
Mark Achtman

Fate of the H-NS-repressed bgl operon in evolution of Escherichia coli

PLoS Genet
2009 | Journal article
Source: Self-asserted source
Mark Achtman

Identification of new epidemiological molecular markers by comparative proteomics of serogroup A meningococcal isolates from three pandemic waves

PROTEOMICS-Clinical Applications
2009 | Journal article
Source: Self-asserted source
Mark Achtman

The peopling of the Pacific from a bacterial perspective

Science
2009 | Journal article
Source: Self-asserted source
Mark Achtman

Ceftriaxone-resistant salmonella enterica serotype Newport, France

Emerging infectious diseases
2008 | Journal article
Source: Self-asserted source
Mark Achtman
Items per page:
Page 1 of 5

Peer review (3 reviews for 3 publications/grants)

Review activity for Genome biology. (1)
Review activity for Nature (1)
Review activity for PLoS biology. (1)
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