Personal information

Networks, Deep Learning, Statistical Models, Precision Medicine, Personalized Healthcare
United States

Activities

Employment (5)

Carnegie Mellon University: Pittsburgh, PA, US

2020-09 to present | Research Assistant (Computational Biology Department)
Employment
Source: Self-asserted source
Caleb Ellington

University of Washington: Seattle, WA, US

2019-01 to 2020-06 | Undergraduate Research Assistant (Institute for Protein Design, Baker Lab)
Employment
Source: Self-asserted source
Caleb Ellington

Indeed: Austin, TX, US

2019-06 to 2019-09 | Software Engineer Intern
Employment
Source: Self-asserted source
Caleb Ellington

Amazon: Seattle, WA, US

2018-06 to 2019-08 | Software Engineer Intern
Employment
Source: Self-asserted source
Caleb Ellington

University of Washington: Seattle, WA, US

2017-01 to 2018-12 | Undergraduate Research Assistant (Electrical and Computer Engineering, Klavins Lab)
Employment
Source: Self-asserted source
Caleb Ellington

Education and qualifications (2)

Carnegie Mellon University: Pittsburgh, PA, US

2020-09 to present | PhD in Computational Biology (School of Computer Science)
Education
Source: Self-asserted source
Caleb Ellington

University of Washington: Seattle, WA, US

2016 to 2020 | B.Sc. (Computer Science and Bioengineering)
Education
Source: Self-asserted source
Caleb Ellington

Works (5)

Accurate and General DNA Representations Emerge from Genome Foundation Models at Scale

2024-12-05 | Preprint
Contributors: Caleb N. Ellington; Ning Sun; Nicholas Ho; Tianhua Tao; Sazan Mahbub; Dian Li; Yonghao Zhuang; Hongyi Wang; Le Song; Eric P. Xing
Source: check_circle
Crossref

Scaling Dense Representations for Single Cell with Transcriptome-Scale Context

2024-12-03 | Preprint
Contributors: Nicholas Ho; Caleb N. Ellington; Jinyu Hou; Sohan Addagudi; Shentong Mo; Tianhua Tao; Dian Li; Yonghao Zhuang; Hongyi Wang; Xingyi Cheng et al.
Source: check_circle
Crossref

A Large-Scale Foundation Model for RNA Function and Structure Prediction

2024-11-29 | Preprint
Contributors: Shuxian Zou; Tianhua Tao; Sazan Mahbub; Caleb N. Ellington; Robin Algayres; Dian Li; Yonghao Zhuang; Hongyi Wang; Le Song; Eric P. Xing
Source: check_circle
Crossref

Contextualized: Heterogeneous Modeling Toolbox

Journal of Open Source Software
2024-05-08 | Journal article
Contributors: Caleb N. Ellington; Benjamin J. Lengerich; Wesley Lo; Aaron Alvarez; Andrea Rubbi; Manolis Kellis; Eric P. Xing
Source: check_circle
Crossref

Contextualized Networks Reveal Heterogeneous Transcriptomic Regulation in Tumors at Sample-Specific Resolution

2023-12-04 | Preprint
Contributors: Caleb N. Ellington; Benjamin J. Lengerich; Thomas B.K. Watkins; Jiekun Yang; Hanxi Xiao; Manolis Kellis; Eric P. Xing
Source: check_circle
Crossref