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Scopus Author ID: 7202276279

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Employment (1)

New Zealand Institute for Plant and Food Research Ltd: Christchurch, NZ

2006-11-01 to present | Bioinformatician (Molecular & Digital Breeding)
Employment
Source: Self-asserted source
Susan Thomson

Education and qualifications (2)

University of Glasgow: Glasgow, Glasgow, GB

Bsc (Hons) (Genetics)
Education
Source: Self-asserted source
Susan Thomson

University of Dundee: Dundee, Dundee, GB

PhD (Biochemistry)
Education
Source: Self-asserted source
Susan Thomson

Works (39)

Visual Integration of Genome-Wide Association Studies and Differential Expression Results with the Hidecan R Package

Genes
2024-09-25 | Journal article
DOI: 10.3390/genes15101244
Contributors: Olivia Angelin-Bonnet; Matthieu Vignes; Patrick J. Biggs; Samantha Baldwin; Susan Thomson
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Low-pass nanopore sequencing for measurement of global methylation levels in plants

2024-08-16 | Preprint
DOI: 10.1101/2024.08.12.607255
Contributors: Yusmiati Liau; Annabel Whibley; Amy Hill; Bhanupratap Vanga; Meeghan Pither-Joyce; Elena Hilario; Sarah Bailey; Susan J. Thomson; Darrell Lizamore
Source: check_circle
Crossref

Flawed machine-learning confounds coding sequence annotation

2024-05-16 | Preprint
DOI: 10.1101/2024.05.16.594598
Contributors: DJ Champion; Ting-Hsuan Chen; Susan Thomson; Michael A. Black; Paul P. Gardner
Source: check_circle
Crossref

Investigating the genetic components of tuber bruising in a breeding population of tetraploid potatoes

BMC Plant Biology
2023 | Journal article
DOI: 10.1186/s12870-023-04255-2
EID:

2-s2.0-85158116830

Part of ISSN: 14712229
Contributors: Angelin-Bonnet, O.; Thomson, S.; Vignes, M.; Biggs, P.J.; Monaghan, K.; Bloomer, R.; Wright, K.; Baldwin, S.
Source: Self-asserted source
Susan Thomson via Scopus - Elsevier

Implementation of different relationship estimate methodologies in breeding value prediction in kiwiberry (Actinidia arguta)

Molecular Breeding
2023-10 | Journal article
DOI: 10.1007/s11032-023-01419-8
Contributors: Daniel Mertten; Samantha Baldwin; Canhong H. Cheng; John McCallum; Susan Thomson; David T. Ashton; Catherine M. McKenzie; Michael Lenhard; Paul M. Datson
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Crossref
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Visual integration of GWAS and differential expression results with the hidecan R package

2023-04-03 | Preprint
DOI: 10.1101/2023.03.30.535015
Contributors: Olivia Angelin-Bonnet; Matthieu Vignes; Patrick J. Biggs; Samantha Baldwin; Susan Thomson
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

First Chromosome-Scale Assembly and Deep Floral-Bud Transcriptome of a Male Kiwifruit

Frontiers in Genetics
2022 | Journal article
DOI: 10.3389/fgene.2022.852161
EID:

2-s2.0-85131554970

Part of ISSN: 16648021
Contributors: Tahir, J.; Crowhurst, R.; Deroles, S.; Hilario, E.; Deng, C.; Schaffer, R.; Le Lievre, L.; Brendolise, C.; Chagné, D.; Gardiner, S.E. et al.
Source: Self-asserted source
Susan Thomson via Scopus - Elsevier

High-density linkage map construction in an autotetraploid blueberry population and detection of quantitative trait loci for anthocyanin content

Frontiers in Plant Science
2022 | Journal article
DOI: 10.3389/fpls.2022.965397
EID:

2-s2.0-85139964859

Part of ISSN: 1664462X
Contributors: Montanari, S.; Thomson, S.; Cordiner, S.; Günther, C.S.; Miller, P.; Deng, C.H.; McGhie, T.; Knäbel, M.; Foster, T.; Turner, J. et al.
Source: Self-asserted source
Susan Thomson via Scopus - Elsevier

Construction of a high-density genetic map for hexaploid kiwifruit (Actinidia chinensis var. deliciosa) using genotyping by sequencing

G3 Genes|Genomes|Genetics
2021-05-01 | Journal article
DOI: 10.1093/g3journal/jkab142
Part of ISSN: 2160-1836
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

CRISPR-Cas9 enrichment and long read sequencing for fine mapping in plants

Plant Methods
2020-12 | Journal article
DOI: 10.1186/s13007-020-00661-x
Contributors: Elena López-Girona; Marcus W. Davy; Nick W. Albert; Elena Hilario; Maia E. M. Smart; Chris Kirk; Susan J. Thomson; David Chagné
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Crossref
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QTL Mapping for Resistance to Cankers Induced by Pseudomonas syringae pv. actinidiae (Psa) in a Tetraploid Actinidia chinensis Kiwifruit Population

Pathogens
2020-11-20 | Journal article
DOI: 10.3390/pathogens9110967
Part of ISSN: 2076-0817
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Tuber transcriptome profiling of eight potato cultivars with different cold-induced sweetening responses to cold storage

Plant Physiology and Biochemistry
2020-01 | Journal article
DOI: 10.1016/j.plaphy.2019.11.001
Part of ISSN: 0981-9428
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

sismonr: simulation of in silico multi-omic networks with adjustable ploidy and post-transcriptional regulation in R

Bioinformatics
2020-01-21 | Journal article
DOI: 10.1093/bioinformatics/btaa002
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Exploring the use of transposon mobilization to produce a gene-tagged population for grapevine

Acta Horticulturae
2019 | Book
DOI: 10.17660/ActaHortic.2019.1248.23
EID:

2-s2.0-85072538539

Part of ISSN: 24066168 05677572
Contributors: Bicknell, R.; Winefield, C.; Lizamore, D.; Chan, T.-H.; Millar, T.; Thomson, S.; Larrouy, J.; Barrell, P.; Thompson, M.
Source: Self-asserted source
Susan Thomson via Scopus - Elsevier

Development and application of high-resolution melting DNA markers for the polygenic control of tuber skin colour in autotetraploid potato

Molecular Breeding
2019-07 | Journal article
DOI: 10.1007/s11032-019-1009-0
Part of ISSN: 1380-3743
Part of ISSN: 1572-9788
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Molecular Characterisation of a Supergene Conditioning Super-High Vitamin C in Kiwifruit Hybrids

Plants
2019-07-22 | Journal article
DOI: 10.3390/plants8070237
Part of ISSN: 2223-7747
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Automating and documenting workflows for marker design from crop next-generation-sequencing data

Acta Horticulturae
2018 | Book
DOI: 10.17660/ActaHortic.2018.1203.6
EID:

2-s2.0-85082349092

Part of ISSN: 24066168 05677572
Contributors: McCallum, J.; Knäbel, M.; Buck, E.; Kong, H.; Millar, T.; Davis, B.; Thomson, S.; Pither-Joyce, M.; Dwight, Z.; Baldwin, S.
Source: Self-asserted source
Susan Thomson via Scopus - Elsevier

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

BMC Genomics
2018-12 | Journal article
DOI: 10.1186/s12864-018-4656-3
Part of ISSN: 1471-2164
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Genomic Selection for Ascochyta Blight Resistance in Pea

Frontiers in Plant Science
2018-12-20 | Journal article
DOI: 10.3389/fpls.2018.01878
Part of ISSN: 1664-462X
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

High resolution DNA melting markers for identification of H1-linked resistance to potato cyst nematode

Mol. Breeding
2018-06 | Journal article
DOI: 10.1007/s11032-018-0832-z
Part of ISSN: 1380-3743
Part of ISSN: 1572-9788
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

Bioinformatics
2018-06-01 | Journal article
DOI: 10.1093/bioinformatics/bty442
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 3)‎

Kiwifruit SVP2 controls developmental and drought-stress pathways

Plant Mol Biol
2018-02 | Journal article
DOI: 10.1007/s11103-017-0688-3
Part of ISSN: 0167-4412
Part of ISSN: 1573-5028
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Gene expression profiles predictive of cold-induced sweetening in potato.

Functional & integrative genomics
2017-02-24 | Journal article
DOI: 10.1007/s10142-017-0549-9
PMID: 28236275
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Molecular genetics analysis of onion (Allium cepaL.) adaptive physiology of bulb

Acta. Hort
2016-02 | Journal article
DOI: 10.17660/actahortic.2016.1110.11
Part of ISSN: 0567-7572
Part of ISSN: 2406-6168
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 3)‎

Tuber shape and eye depth variation in a diploid family of Andean potatoes

BMC Genetics
2015-12 | Journal article
DOI: 10.1186/s12863-015-0213-0
Part of ISSN: 1471-2156
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Structure and expression of GSL1 and GSL2 genes encoding gibberellin stimulated-like proteins in diploid and highly heterozygous tetraploid potato reveals their highly conserved and essential status

BMC Genomics
2014 | Journal article
DOI: 10.1186/1471-2164-15-2
Part of ISSN: 1471-2164
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Construction of Reference Chromosome-Scale Pseudomolecules for Potato: Integrating the Potato Genome with Genetic and Physical Maps

G3: Genes Genomes Genetics
2013-11 | Journal article
DOI: 10.1534/g3.113.007153
Part of ISSN: 2160-1836
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Genetic analyses of bolting in bulb onion (Allium cepa L.).

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
2013-11-19 | Journal article
DOI: 10.1007/s00122-013-2232-4
PMID: 24247236
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Inhibition of Platelet Activation by Lachrymatory Factor Synthase (LFS)-Silenced (Tearless) Onion Juice

J. Agric. Food Chem.
2013-11-06 | Journal article
DOI: 10.1021/jf4030213
Part of ISSN: 0021-8561
Part of ISSN: 1520-5118
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

A toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.).

BMC genomics
2012-11-19 | Journal article
DOI: 10.1186/1471-2164-13-637
PMID: 23157543
PMC: PMC3534495
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Allele diversity for the apoplastic invertase inhibitor gene from potato.

Molecular genetics and genomics : MGG
2012-04-25 | Journal article
DOI: 10.1007/s00438-012-0690-z
PMID: 22526372
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Genome sequence and analysis of the tuber crop potato

Nature
2011-07 | Journal article
DOI: 10.1038/nature10158
Part of ISSN: 0028-0836
Part of ISSN: 1476-4687
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Identification of Mendel's white flower character.

PloS one
2010-10-11 | Journal article
DOI: 10.1371/journal.pone.0013230
PMID: 20949001
PMC: PMC2952588
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Genetic Diversity Analysis and Single-nucleotide Polymorphism Marker Development in Cultivated Bulb Onion Based on Expressed Sequence Tag–Simple Sequence Repeat Markers

Amer. Soc. Hort. Sci.
2008-11 | Journal article
DOI: 10.21273/jashs.133.6.810
Part of ISSN: 0003-1062
Part of ISSN: 2327-9788
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Inhibition of receptor-mediated apoptosis upon Bcl-2 overexpression is not associated with increased antioxidant status.

Biochemical and biophysical research communications
2008-08-05 | Journal article
DOI: 10.1016/j.bbrc.2008.07.133
PMID: 18687309
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Induction of apoptosis by phenethyl isothiocyanate in cells overexpressing Bcl-XL.

Cancer letters
2008-07-18 | Journal article
DOI: 10.1016/j.canlet.2008.06.002
PMID: 18639976
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Phenethyl isothiocyanate triggers apoptosis in Jurkat cells made resistant by the overexpression of Bcl-2.

Cancer research
2006-07-01 | Journal article
DOI: 10.1158/0008-5472.can-05-3809
PMID: 16818653
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

The chemopreventive agent phenethyl isothiocyanate sensitizes cells to Fas-mediated apoptosis.

Carcinogenesis
2004-01-16 | Journal article
DOI: 10.1093/carcin/bgh063
PMID: 14729592
Source: Self-asserted source
Susan Thomson
grade
Preferred source (of 2)‎

Ectopic expression of Msx2 in chick retinal pigmented epithelium cultures suggests a role in patterning the optic vesicle.

Mechanisms of development
2000-03-01 | Journal article
DOI: 10.1016/s0925-4773(99)00296-8
PMID: 10704842
Source: Self-asserted source
Susan Thomson
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