Personal information

Bioinformaticis Data Analysis, OMICS, Systems Medicine, Inflammation, Research
Portugal

Activities

Employment (5)

INESC-ID: Lisbon, Lisbon, PT

2021-02-01 to present | FCT PhD Scholarship
Employment
Source: Self-asserted source
José Basílio

Medical University of Vienna: Vienna, Vienna, AT

2015-04 to 2021-01-31 | Bioinformatician (Department of Vascular Biology and Thrombosis Research)
Employment
Source: Self-asserted source
José Basílio

Medical University of Vienna: Vienna, Vienna, AT

2013-11 to 2015-03 | Wet-Lab Research Assistant (Department of Vascular Biology and Thrombosis Research)
Employment
Source: Self-asserted source
José Basílio

Medical University of Vienna: Vienna, Vienna, AT

2012-09 to 2013-09 | Wet-Lab Research Assistant (Master Thesis) (Department for Vascular Biology and Thrombosis Research)
Employment
Source: Self-asserted source
José Basílio

Forschungsinstitut für Orthopädietechnik: Vienna, Vienna, AT

2010-04 to 2010-12
Employment
Source: Self-asserted source
José Basílio

Education and qualifications (8)

Instituto Superior Técnico: Lisbon, Lisbon, PT

2021-02-01 to present | PhD Student (Biomedical Engineering)
Qualification
Source: Self-asserted source
José Basílio

University of Applied Sciences Wien: Vienna, Vienna, AT

2016-09 to 2018-09 | Attendance in Bioinformatics MSc
Education
Source: Self-asserted source
José Basílio

Cyprus Institute of Neurology and Genetics: Nicosia, Nicosia, CY

2018-05-29 to 2018-05-31 | OpenMultiMed Training School: Systems Bioinformatics towards Network Medicine (The Bioinformatics European Research Area Chair of the Cyprus Institute of Neurology and Genetics)
Qualification
Source: Self-asserted source
José Basílio

Instituto Superior Técnico: Lisbon, PT

2017-10-25 to 2017-10-27 | GREEKC Training School: Knowledge Commons and Tools interoperability (INESC-ID)
Qualification
Source: Self-asserted source
José Basílio

University of Ljubljana: Ljubljana, Ljubljana, SI

2016-09-26 to 2016-09-28 | Open MultiMed Training School: Computational Tools for Systems Medicine (Faculty of Civil and Geodetic Engineering)
Qualification
Source: Self-asserted source
José Basílio

European Bioinformatics Institute: Cambridge, GB

2016-05-09 to 2016-05-13 | Pathways and Networks
Qualification
Source: Self-asserted source
José Basílio

University of Applied Sciences Technikum Wien: Vienna, Vienna, AT

2011-09 to 2013-09 | Finished as Master in Sciences of Engineering (MSc) with distinction (Master in Tissue Engineering and Regenerative Medicine)
Education
Source: Self-asserted source
José Basílio

University of Algarve: Faro, Faro, PT

2005 to 2009 | Finished as Licenciado (BSc) in Bioengineering (Biotechnology)
Education
Source: Self-asserted source
José Basílio

Professional activities (6)

Universidade de Lisboa Instituto Superior Técnico: Lisboa, Lisboa, PT

2021-09-01 to present | Invited Associated Lecturer (Computational Biology) (DEI )
Invited position
Source: Self-asserted source
José Basílio

International Network and Systems Medicine Association: Acchen, DE

2020-02 to present | Personal Membership
Membership
Source: Self-asserted source
José Basílio

University of Applied Sciences Technikum Wien: Vienna, Vienna, AT

2018-05 to present | Lecturer in Bioinformatics (Bachelor in Biomedical Engineering)
Invited position
Source: Self-asserted source
José Basílio

University of Applied Sciences Technikum Wien: Vienna, Vienna, AT

2014-05 to 2020-05 | Lecturer in Gene Regulation and Signal Transduction (Master in Tissue Engineering and Regenerative Medicine)
Invited position
Source: Self-asserted source
José Basílio

European Cooperation in Science and Technology: Brussels, BE

2016-11 to 2020-03-31 | Substitute member of Working Group 1 in representation of Austria (OpenMultiMed COST ACTION CA15120)
Membership
Source: Self-asserted source
José Basílio

University of Applied Sciences Technikum Wien: Vienna, Vienna, AT

2012-11 | Excellence Scholarship Award
Distinction
Source: Self-asserted source
José Basílio

Funding (6)

Integrative single-cell analysis of chronically inflamed arteries to identify unknown cellular identities and their contribution to atherosclerosis

2021 to 2024 | Grant
Fundação para a Ciência e a Tecnologia (Lisbon, PT)
GRANT_NUMBER:

2020.09166.BD

Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

TS9: Multiscale Systems Medicine: “Applying the System Medicine approach with bioinformatics tools in research”

2020-03 to 2020-03 | Grant
European Cooperation in Science and Technology (Brussels, BE)
GRANT_NUMBER:

ECOST-TRAINING_SCHOOL-CA15120-300320-112478

Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Elucidating the role of IkB kinase 2 in atherothrombosis by multi-omics interactome analysis

2018-10 to 2018-10 | Grant
European Cooperation in Science and Technology (Brussels, BE)
GRANT_NUMBER:

42004

Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

TS4 - cyprus Systems Bioinformatics towards Network Medicine

2018-05 to 2018-05 | Grant
European Cooperation in Science and Technology (Brussels, BE)
GRANT_NUMBER:

ECOST-TRAINING_SCHOOL-CA15120-290518-100335

Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Data Sharing Training School

2017-10 to 2017-10 | Grant
European Cooperation in Science and Technology (Brussels, BE)
GRANT_NUMBER:

ECOST-TRAINING_SCHOOL-CA15205-071117-085864

Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

TS2: Open MultiMed Training School “Computational Tools for Systems Medicine”

2017-09 to 2017-09 | Grant
European Cooperation in Science and Technology (Brussels, BE)
GRANT_NUMBER:

ECOST-TRAINING_SCHOOL-CA15120-260917-091935

Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Works (26)

Transcriptomic Profiles of the Nasal Mucosa Following Birch Pollen Provocation Differ Between Birch Pollen‐Allergic and Non‐Allergic Individuals

Allergy
2024-12-24 | Journal article
Contributors: Srinidhi Sudharson; Julia Eckl‐Dorna; Anastasia Meshcheryakova; José Basílio; Sophia Derdak; Tanja Kalic; Nina Lengger; Nina Schweitzer; Diana Mechtcheriakova; Heimo Breiteneder et al.
Source: check_circle
Crossref

Effects of Chronic Inflammatory Activation of Murine and Human Arterial Endothelial Cells at Normal Lipoprotein and Cholesterol Levels In Vivo and In Vitro

Cells
2024-04-30 | Journal article
Contributors: Marion Mussbacher; José Basílio; Barbora Belakova; Anita Pirabe; Elisabeth Ableitner; Manuel Campos-Medina; Johannes A. Schmid
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

NF-κB in monocytes and macrophages – an inflammatory master regulator in multitalented immune cells

Frontiers in Immunology
2023-02-23 | Journal article
Part of ISSN: 1664-3224
Contributors: Marion Mussbacher; Martina Derler; José Basílio; Johannes A. Schmid
Source: Self-asserted source
José Basílio

Antagonistic Functions of Androgen Receptor and NF-κB in Prostate Cancer—Experimental and Computational Analyses

Cancers
2022-12-14 | Journal article | Investigation, Data curation, Formal analysis
Part of ISSN: 2072-6694
Contributors: José Basílio; Bernhard Hochreiter; Bastian Hoesel; Emira Sheshori; Marion Mussbacher; Rudolf Hanel; Johannes A. Schmid
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Integrative single-cell analysis of atherosclerotic arteries to identify unknown cellular identities

IGC Symposium [3C] Cells
2022-10-28 | Conference abstract
Contributors: José Basílio; Johannes Schmid; Susana Vinga
Source: Self-asserted source
José Basílio

An Early Stage Researcher's Primer on Systems Medicine Terminology

Network and systems medicine
2021-02-01 | Journal article
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

MicroRNA Signatures in Plasma of Patients With Venous Thrombosis: A Preliminary Report.

The American journal of the medical sciences
2021-01-18 | Journal article
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

The inflammatory kinase IKKα phosphorylates and stabilizes c-Myc and enhances its activity.

Molecular cancer
2021-01-18 | Journal article
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Ikk2-mediated inflammatory activation of arterial endothelial cells promotes the development and progression of atherosclerosis.

Atherosclerosis
2020-07-06 | Journal article
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Network and Systems Medicine: Position Paper of the European Collaboration on Science and Technology Action on Open Multiscale Systems Medicine

Network and Systems Medicine
2020-07-01 | Journal article
Part of ISSN: 2690-5949
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Comparative Interactome Analysis of Emerin, MAN1 and LEM2 Reveals a Unique Role for LEM2 in Nucleotide Excision Repair.

Cells
2020-02-18 | Journal article
Source: Self-asserted source
José Basílio
grade
Preferred source (of 3)‎

Altered platelet proteome in lupus anticoagulant (LA)-positive patients-protein disulfide isomerase and NETosis as new players in LA-related thrombosis.

Experimental & molecular medicine
2020-01-20 | Journal article
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Comparative proteomics reveals unexpected quantitative phosphorylation differences linked to platelet activation state.

Scientific reports
2019-12-12 | Journal article
Source: Self-asserted source
José Basílio
grade
Preferred source (of 3)‎

Purinergic P2Y2 receptors modulate endothelial sprouting

Cellular and Molecular Life Sciences
2019-07-05 | Journal article
Part of ISSN: 1420-682X
Part of ISSN: 1420-9071
Source: Self-asserted source
José Basílio
grade
Preferred source (of 3)‎

Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine

Briefings in Bioinformatics
2019-05-21 | Journal article
Part of ISSN: 1477-4054
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Cell Type-Specific Roles of NF-κB Linking Inflammation and Thrombosis

Frontiers in Immunology
2019-02-04 | Journal article
Part of ISSN: 1664-3224
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Hypoxia/reperfusion predisposes to atherosclerosis

PLOS ONE
2018-10-05 | Journal article
Part of ISSN: 1932-6203
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Androgen receptor dampens tissue factor expression via nuclear factor‐κB and early growth response protein 1

Journal of Thrombosis and Haemostasis
2018-04 | Journal article
Part of ISSN: 1538-7933
Part of ISSN: 1538-7836
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

12(S)-HETE induces lymph endothelial cell retraction in�vitro by upregulation of SOX18

International Journal of Oncology
2018-04-26 | Journal article
Part of ISSN: 1019-6439
Part of ISSN: 1791-2423
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

CD40L and TNF both activate the classical NF-κB pathway, which is not required for the CD40L induced alternative pathway in endothelial cells

Biochemical and Biophysical Research Communications
2018-01 | Journal article
Part of ISSN: 0006-291X
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Tissue factor is induced by interleukin-33 in human endothelial cells: a new link between coagulation and inflammation

Scientific Reports
2016-07 | Journal article
Part of ISSN: 2045-2322
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Maintenance therapy with histamine plus IL-2 induces a striking expansion of two CD56<sup>bright</sup> NK cell subpopulations in patients with acute myeloid leukemia and supports their activation

Oncotarget
2016-07-19 | Journal article
Part of ISSN: 1949-2553
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Myeloid PTEN deficiency impairs tumor-immune surveillance via immune-checkpoint inhibition

OncoImmunology
2016-07-02 | Journal article
Part of ISSN: 2162-402X
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

Sequence-function correlations and dynamics of ERG isoforms. ERG8 is the black sheep of the family

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
2016-02 | Journal article
Part of ISSN: 0167-4889
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

NF-&#x3BA;B contributes to MMP1 expression in breast cancer spheroids causing paracrine PAR1 activation and disintegrations in the lymph endothelial barrier <i>in vitro</i>

Oncotarget
2015-11-17 | Journal article
Part of ISSN: 1949-2553
Source: Self-asserted source
José Basílio
grade
Preferred source (of 2)‎

TNFα-induced down-regulation of Sox18 in endothelial cells is dependent on NF-κB.

2013-12 | Journal article
Contributors: Basílio J; Hoeth M; Holper-Schichl YM; Resch U; Mayer H; Hofer-Warbinek R; de Martin R
Source: Self-asserted source
José Basílio via Europe PubMed Central
grade
Preferred source (of 2)‎