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Scopus Author ID: 58906092500
Scopus Author ID: 57219049993
Loop profile: 1162525

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Employment (1)

University of California, San Francisco: San Francisco, California, US

Employment
Source: Self-asserted source
tomiko oskotsky

Education and qualifications (2)

University of California Los Angeles: Los Angeles, CA, US

BS Biochemistry
Education
Source: Self-asserted source
tomiko oskotsky

Medical College of Wisconsin: Milwaukee, WI, US

MD
Education
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tomiko oskotsky

Professional activities (1)

Alpha Omega Alpha Medical Honor Society: Menlo Park, California, US

Distinction
Source: Self-asserted source
tomiko oskotsky

Works (33)

A scalable platform for acquisition of high-fidelity human intracranial EEG with minimal clinical burden

PLoS ONE
2024 | Journal article
DOI: 10.1371/journal.pone.0305009
EID:

2-s2.0-85196047677

Part of ISSN: 19326203
Contributors: Yamada, L.; Oskotsky, T.; Nuyujukian, P.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Discovery of sparse, reliable omic biomarkers with Stabl

Nature Biotechnology
2024 | Journal article
DOI: 10.1038/s41587-023-02033-x
EID:

2-s2.0-85181223325

Part of ISSN: 15461696 10870156
Contributors: Hédou, J.; Marić, I.; Bellan, G.; Einhaus, J.; Gaudillière, D.K.; Ladant, F.-X.; Verdonk, F.; Stelzer, I.A.; Feyaerts, D.; Tsai, A.S. et al.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Leveraging electronic health records and knowledge networks for Alzheimer’s disease prediction and sex-specific biological insights

Nature Aging
2024 | Journal article
DOI: 10.1038/s43587-024-00573-8
EID:

2-s2.0-85185919145

Part of ISSN: 26628465
Contributors: Tang, A.S.; Rankin, K.P.; Cerono, G.; Miramontes, S.; Mills, H.; Roger, J.; Zeng, B.; Nelson, C.; Soman, K.; Woldemariam, S. et al.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research

Cell Reports Medicine
2024 | Journal article
DOI: 10.1016/j.xcrm.2023.101350
EID:

2-s2.0-85180597281

Part of ISSN: 26663791
Contributors: Golob, J.L.; Oskotsky, T.T.; Tang, A.S.; Roldan, A.; Chung, V.; Ha, C.W.Y.; Wong, R.J.; Flynn, K.J.; Parraga-Leo, A.; Wibrand, C. et al.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Harnessing EHR data for health research

Nature Medicine
2024-07 | Journal article
DOI: 10.1038/s41591-024-03074-8
Contributors: Alice S. Tang; Sarah R. Woldemariam; Silvia Miramontes; Beau Norgeot; Tomiko T. Oskotsky; Marina Sirota
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Identifying therapeutic candidates for endometriosis through a transcriptomics-based drug repositioning approach

iScience
2024-04 | Journal article
DOI: 10.1016/j.isci.2024.109388
Contributors: Tomiko T. Oskotsky; Arohee Bhoja; Daniel Bunis; Brian L. Le; Alice S. Tang; Idit Kosti; Christine Li; Sahar Houshdaran; Sushmita Sen; Júlia Vallvé-Juanico et al.
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Data-driven longitudinal characterization of neonatal health and morbidity

Science Translational Medicine
2023 | Journal article
DOI: 10.1126/scitranslmed.adc9854
EID:

2-s2.0-85148114514

Part of ISSN: 19466242 19466234
Contributors: Francesco, D.D.; Reiss, J.D.; Roger, J.; Tang, A.S.; Chang, A.L.; Becker, M.; Phongpreecha, T.; Espinosa, C.; Morin, S.; Berson, E. et al.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies

Cell Reports Methods
2023 | Journal article
DOI: 10.1016/j.crmeth.2023.100639
EID:

2-s2.0-85177664597

Part of ISSN: 26672375
Contributors: Minot, S.S.; Garb, B.; Roldan, A.; Tang, A.S.; Oskotsky, T.T.; Rosenthal, C.; Hoffman, N.G.; Sirota, M.; Golob, J.L.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients

PLoS Computational Biology
2023 | Journal article
DOI: 10.1371/journal.pcbi.1011050
EID:

2-s2.0-85159765865

Part of ISSN: 15537358 1553734X
Contributors: Sperry, M.M.; Oskotsky, T.T.; Marić, I.; Kaushal, S.; Takeda, T.; Horvath, V.; Powers, R.K.; Rodas, M.; Furlong, B.; Soong, M. et al.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Endometriosis in the era of precision medicine and impact on sexual and reproductive health across the lifespan and in diverse populations

The FASEB Journal
2023-09 | Journal article
DOI: 10.1096/fj.202300907
Contributors: Linda C. Giudice; Tomiko T. Oskotsky; Simileoluwa Falako; Jessica Opoku‐Anane; Marina Sirota
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Similarities and differences in Alzheimer’s dementia comorbidities in racialized populations identified from electronic medical records

Communications Medicine
2023-04-08 | Journal article
DOI: 10.1038/s43856-023-00280-2
Contributors: Sarah R. Woldemariam; Alice S. Tang; Tomiko T. Oskotsky; Kristine Yaffe; Marina Sirota
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Leveraging electronic health records to identify risk factors for recurrent pregnancy loss across two medical centers: a case-control study

2023-03-31 | Preprint
DOI: 10.21203/rs.3.rs-2631220/v2
Contributors: Jacquelyn Roger; Feng Xie; Jean Costello; Alice Tang; Jay Liu; Tomiko Oskotsky; Sarah Woldemariam; Idit Kosti; Brian Le; Michael Snyder et al.
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VMAP: Vaginal Microbiome Atlas During Pregnancy

2023-03-24 | Preprint
DOI: 10.1101/2023.03.21.23286947
Contributors: Antonio Parraga-Leo; Tomiko T. Oskotsky; Boris Oskotsky; Camilla Wibrand; Alennie Roldan; Alice Tang; Connie W.Y. Ha; Ronald J. Wong; Samuel S. Minot; Gaia Andreoletti et al.
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Bioinformatics Analysis of Publicly Available Single-Nuclei Transcriptomics Alzheimer’s Disease Datasets Reveals APOE Genotype-Specific Changes Across Cell Types in Two Brain Regions

Frontiers in Aging Neuroscience
2022 | Journal article
DOI: 10.3389/fnagi.2022.749991
EID:

2-s2.0-85130155170

Part of ISSN: 16634365
Contributors: Belonwu, S.A.; Li, Y.; Bunis, D.G.; Rao, A.A.; Solsberg, C.W.; Oskotsky, T.; Taubes, A.L.; Grone, B.; Zalocusky, K.A.; Fragiadakis, G.K. et al.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Large-scale placenta DNA methylation integrated analysis reveals fetal sex-specific differentially methylated CpG sites and regions

Scientific Reports
2022 | Journal article
DOI: 10.1038/s41598-022-13544-z
EID:

2-s2.0-85131483454

Part of ISSN: 20452322
Contributors: Andrews, S.V.; Yang, I.J.; Froehlich, K.; Oskotsky, T.; Sirota, M.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Sex-Stratified Single-Cell RNA-Seq Analysis Identifies Sex-Specific and Cell Type-Specific Transcriptional Responses in Alzheimer’s Disease Across Two Brain Regions

Molecular Neurobiology
2022 | Journal article
DOI: 10.1007/s12035-021-02591-8
EID:

2-s2.0-85117283437

Part of ISSN: 15591182 08937648
Contributors: Belonwu, S.A.; Li, Y.; Bunis, D.; Rao, A.A.; Solsberg, C.W.; Tang, A.; Fragiadakis, G.K.; Dubal, D.B.; Oskotsky, T.; Sirota, M.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Robust Harmonization of Microbiome Studies by Phylogenetic Scaffolding with MaLiAmPi

2022-07-27 | Preprint
DOI: 10.1101/2022.07.26.501561
Contributors: Samuel S Minot; Bailey Garb; Alennie Roldan; Alice Tang; Tomiko Oskotsky; Christopher Rosenthal; Noah G Hoffman; Marina Sirota; Jonathan L Golob
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Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients

2022-04-13 | Preprint
DOI: 10.1101/2022.04.12.22273802
Contributors: Megan M. Sperry; Tomiko Oskotsky; Ivana Marić; Shruti Kaushal; Takako Takeda; Viktor Horvath; Rani K. Powers; Melissa Rodas; Brooke Furlong; Mercy Soong et al.
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Deep phenotyping of Alzheimer’s disease leveraging electronic medical records identifies sex-specific clinical associations

Nature Communications
2022-02-03 | Journal article
DOI: 10.1038/s41467-022-28273-0
Contributors: Alice S. Tang; Tomiko Oskotsky; Shreyas Havaldar; William G. Mantyh; Mesude Bicak; Caroline Warly Solsberg; Sarah Woldemariam; Billy Zeng; Zicheng Hu; Boris Oskotsky et al.
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Nurturing diversity and inclusion in AI in Biomedicine through a virtual summer program for high school students

PLOS Computational Biology
2022-01-31 | Journal article
DOI: 10.1371/journal.pcbi.1009719
Contributors: Tomiko Oskotsky; Francis Ouellette; Ruchika Bajaj; Jillian Burchard; Taylor Cavazos; Ina Chen; William T. Connell; Stephanie Eaneff; Tianna Grant; Ishan Kanungo et al.
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Cross-Tissue Transcriptomic Analysis Leveraging Machine Learning Approaches Identifies New Biomarkers for Rheumatoid Arthritis

Frontiers in Immunology
2021 | Journal article
DOI: 10.3389/fimmu.2021.638066
EID:

2-s2.0-85108975223

Part of ISSN: 16643224
Contributors: Rychkov, D.; Neely, J.; Oskotsky, T.; Yu, S.; Perlmutter, N.; Nititham, J.; Carvidi, A.; Krueger, M.; Gross, A.; Criswell, L.A. et al.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Decreased Mortality Rate Among COVID-19 Patients Prescribed Statins: Data From Electronic Health Records in the US

Frontiers in Medicine
2021 | Journal article
DOI: 10.3389/fmed.2021.639804
EID:

2-s2.0-85100933532

Part of ISSN: 2296858X
Contributors: Marić, I.; Oskotsky, T.; Kosti, I.; Le, B.; Wong, R.J.; Shaw, G.M.; Sirota, M.; Stevenson, D.K.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Drugs in COVID-19 Clinical Trials: Predicting Transporter-Mediated Drug-Drug Interactions Using In Vitro Assays and Real-World Data

Clinical Pharmacology and Therapeutics
2021 | Journal article
DOI: 10.1002/cpt.2236
EID:

2-s2.0-85104966033

Part of ISSN: 15326535 00099236
Contributors: Yee, S.W.; Vora, B.; Oskotsky, T.; Zou, L.; Jakobsen, S.; Enogieru, O.J.; Koleske, M.L.; Kosti, I.; Rödin, M.; Sirota, M. et al.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Mortality Risk Among Patients With COVID-19 Prescribed Selective Serotonin Reuptake Inhibitor Antidepressants

JAMA Network Open
2021 | Journal article
DOI: 10.1001/jamanetworkopen.2021.33090
EID:

2-s2.0-85119186757

Part of ISSN: 25743805
Contributors: Oskotsky, T.; Marić, I.; Tang, A.; Oskotsky, B.; Wong, R.J.; Aghaeepour, N.; Sirota, M.; Stevenson, D.K.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women With Alzheimer’s Disease

Frontiers in Aging Neuroscience
2021 | Journal article
DOI: 10.3389/fnagi.2021.735611
EID:

2-s2.0-85117067317

Part of ISSN: 16634365
Contributors: Paranjpe, M.D.; Belonwu, S.; Wang, J.K.; Oskotsky, T.; Gupta, A.; Taubes, A.; Zalocusky, K.A.; Paranjpe, I.; Glicksberg, B.S.; Huang, Y. et al.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19

Scientific Reports
2021 | Journal article
DOI: 10.1038/s41598-021-91625-1
EID:

2-s2.0-85107549907

Part of ISSN: 20452322
Contributors: Le, B.L.; Andreoletti, G.; Oskotsky, T.; Vallejo-Gracia, A.; Rosales, R.; Yu, K.; Kosti, I.; Leon, K.E.; Bunis, D.G.; Li, C. et al.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Author Correction: Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer’s disease

Nature Aging
2021-11-12 | Journal article
DOI: 10.1038/s43587-021-00144-1
Contributors: Alice Taubes; Phil Nova; Kelly A. Zalocusky; Idit Kosti; Mesude Bicak; Misha Y. Zilberter; Yanxia Hao; Seo Yeon Yoon; Tomiko Oskotsky; Silvia Pineda et al.
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Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer’s disease

Nature Aging
2021-10-11 | Journal article
DOI: 10.1038/s43587-021-00122-7
Contributors: Alice Taubes; Phil Nova; Kelly A. Zalocusky; Idit Kosti; Mesude Bicak; Misha Y. Zilberter; Yanxia Hao; Seo Yeon Yoon; Tomiko Oskotsky; Silvia Pineda et al.
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Personalizing routine lab tests with machine learning

Nature Medicine
2021-09 | Journal article
DOI: 10.1038/s41591-021-01486-4
Contributors: Alice Tang; Tomiko Oskotsky; Marina Sirota
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Large-scale placenta DNA methylation mega-analysis reveals fetal sex-specific differentially methylated CpG sites and regions

2021-03-26 | Preprint
DOI: 10.21203/rs.3.rs-310838/v1
Contributors: Shan Andrews; Irene Yang; Karolin Froehlich; Tomiko Oskotsky; Marina Sirota
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Crossref

Large-scale placenta DNA methylation mega-analysis reveals fetal sex-specific differentially methylated CpG sites and regions

2021-03-05 | Preprint
DOI: 10.1101/2021.03.04.433985
Contributors: Shan V. Andrews; Irene J. Yang; Karolin Froehlich; Tomiko Oskotsky; Marina Sirota
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Deep posteromedial cortical rhythm in dissociation

Nature
2020 | Journal article
DOI: 10.1038/s41586-020-2731-9
EID:

2-s2.0-85091130824

Part of ISBN:

14764687 00280836
Contributors: Vesuna, S.; Kauvar, I.V.; Richman, E.; Gore, F.; Oskotsky, T.; Sava-Segal, C.; Luo, L.; Malenka, R.C.; Henderson, J.M.; Nuyujukian, P. et al.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Medical students and the electronic health record: 'An epic use of time'

American Journal of Medicine
2014 | Journal article
DOI: 10.1016/j.amjmed.2014.05.027
EID:

2-s2.0-84908192143

Part of ISBN:

15557162 00029343
Contributors: Chi, J.; Kugler, J.; Chu, I.M.; Loftus, P.D.; Evans, K.H.; Oskotsky, T.; Basaviah, P.; Braddock, C.H.
Source: Self-asserted source
tomiko oskotsky via Scopus - Elsevier

Peer review (2 reviews for 2 publications/grants)

Review activity for Brain, behavior, and immunity. (1)
Review activity for Translational psychiatry. (1)
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