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Works (21)

Microbial transformation of dietary xenobiotics shapes gut microbiome composition

Cell
2024-10 | Journal article
DOI: 10.1016/j.cell.2024.08.038
Contributors: Elizabeth J. Culp; Nora T. Nelson; Andrew A. Verdegaal; Andrew L. Goodman
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Impacts of Medications on Microbiome-mediated Protection against Enteric Pathogens

2024-10-18 | Preprint
DOI: 10.21203/rs.3.rs-5199936/v1
Contributors: Andrew Goodman; Aman Kumar; Ruizheng Sun; Bettina Habib; Natasha Barry; Ivaylo Ivanov; Robyn Tamblyn
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Integrating the gut microbiome and pharmacology

Science Translational Medicine
2024-01-31 | Journal article
DOI: 10.1126/scitranslmed.adg8357
Contributors: Andrew A. Verdegaal; Andrew L. Goodman
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Metformin inhibits digestive proteases and impairs protein digestion in mice

Journal of Biological Chemistry
2023-12 | Journal article
DOI: 10.1016/j.jbc.2023.105363
Contributors: Caleb J. Kelly; Andrew A. Verdegaal; Brent W. Anderson; William L. Shaw; Natasha A. Bencivenga-Barry; Ewa Folta-Stogniew; Andrew L. Goodman
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Gut microbes modulate (p)ppGpp during a time-restricted feeding regimen

mBio
2023-12-19 | Journal article
DOI: 10.1128/mbio.01907-23
Contributors: Amy Ontai-Brenning; Randy Hamchand; Jason M. Crawford; Andrew L. Goodman; Edward G. Ruby; Karen Guillemin
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Cross-feeding in the gut microbiome: Ecology and mechanisms

Cell Host & Microbe
2023-04 | Journal article
DOI: 10.1016/j.chom.2023.03.016
Contributors: Elizabeth J. Culp; Andrew L. Goodman
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Bacteria require phase separation for fitness in the mammalian gut

Science
2023-03-17 | Journal article
DOI: 10.1126/science.abn7229
Contributors: Emilia Krypotou; Guy E. Townsend; Xiaohui Gao; Shoichi Tachiyama; Jun Liu; Nick D. Pokorzynski; Andrew L. Goodman; Eduardo A. Groisman
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Multiomics and quantitative modelling disentangle diet, host, and microbiota contributions to the host metabolome

2022-08-15 | Preprint
DOI: 10.1101/2022.08.15.503927
Contributors: Maria Zimmermann-Kogadeeva; Natasha A. Bencivenga-Barry; Michael Zimmermann; Peer Bork; Andrew L. Goodman
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Cancer Microbiology

JNCI: Journal of the National Cancer Institute
2022-05-09 | Journal article
DOI: 10.1093/jnci/djab212
Contributors: Daniel DiMaio; Brinda Emu; Andrew L Goodman; Walther Mothes; Amy Justice
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Gut Commensal Bacteroidetes Encode a Novel Class of Vitamin B 12 -Binding Proteins

mBio
2022-04-26 | Journal article
DOI: 10.1128/mbio.02845-21
Contributors: E. E. Putnam; J. Abellon-Ruiz; B. J. Killinger; J. J. Rosnow; A. G. Wexler; E. Folta-Stogniew; A. T. Wright; B. van den Berg; A. L. Goodman; Laurie E. Comstock
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A Common Pathway for Activation of Host-Targeting and Bacteria-Targeting Toxins in Human Intestinal Bacteria

mBio
2021-08-31 | Journal article
DOI: 10.1128/mBio.00656-21
Contributors: Yiqiao Bao; Andrew A. Verdegaal; Brent W. Anderson; Natasha A. Barry; Jing He; Xiang Gao; Andrew L. Goodman; Joerg Graf
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A decade of advances in transposon-insertion sequencing

Nature Reviews Genetics
2020-09 | Journal article
DOI: 10.1038/s41576-020-0244-x
Contributors: Amy K. Cain; Lars Barquist; Andrew L. Goodman; Ian T. Paulsen; Julian Parkhill; Tim van Opijnen
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Sphingolipids produced by gut bacteria enter host metabolic pathways impacting ceramide levels

Nature Communications
2020-05-18 | Journal article
DOI: 10.1038/s41467-020-16274-w
Contributors: Elizabeth L. Johnson; Stacey L. Heaver; Jillian L. Waters; Benjamin I. Kim; Alexis Bretin; Andrew L. Goodman; Andrew T. Gewirtz; Tilla S. Worgall; Ruth E. Ley
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Insights from pharmacokinetic models of host-microbiome drug metabolism

Gut Microbes
2020-05-03 | Journal article
DOI: 10.1080/19490976.2019.1667724
Contributors: Maria Zimmermann-Kogadeeva; Michael Zimmermann; Andrew L. Goodman
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Erratum for Townsend et al., “A Master Regulator of Bacteroides thetaiotaomicron Gut Colonization Controls Carbohydrate Utilization and an Alternative Protein Synthesis Factor”

mBio
2020-04-28 | Journal article
DOI: 10.1128/mBio.00301-20
Contributors: Guy E. Townsend, II; Weiwei Han; Nathan D. Schwalm, III; Xinyu Hong; Natasha A. Bencivenga-Barry; Andrew L. Goodman; Eduardo A. Groisman
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A Master Regulator of Bacteroides thetaiotaomicron Gut Colonization Controls Carbohydrate Utilization and an Alternative Protein Synthesis Factor

mBio
2020-02-25 | Journal article
DOI: 10.1128/mBio.03221-19
Contributors: Guy E. Townsend, II; Weiwei Han; Nathan D. Schwalm, III; Xinyu Hong; Natasha A. Bencivenga-Barry; Andrew L. Goodman; Eduardo A. Groisman; Laurie E. Comstock
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Crossref

A Screen for Antibiotic Resistance Determinants Reveals a Fitness Cost of the Flagellum in Pseudomonas aeruginosa

Journal of Bacteriology
2020-02-25 | Journal article
DOI: 10.1128/JB.00682-19
Contributors: E. A. Rundell; N. Commodore; A. L. Goodman; B. I. Kazmierczak; Yves V. Brun
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B vitamin acquisition by gut commensal bacteria

PLOS Pathogens
2020-01-23 | Journal article
DOI: 10.1371/journal.ppat.1008208
Contributors: Emily E. Putnam; Kimberly A. Kline; Andrew L. Goodman
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Genetic Manipulation of Wild Human Gut Bacteroides

Journal of Bacteriology
2020-01-15 | Journal article
DOI: 10.1128/JB.00544-19
Contributors: Natasha A. Bencivenga-Barry; Bentley Lim; Carmen M. Herrera; M. Stephen Trent; Andrew L. Goodman; Laurie E. Comstock
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Separating host and microbiome contributions to drug pharmacokinetics and toxicity

Science
2019-02-08 | Journal article
DOI: 10.1126/science.aat9931
Contributors: Michael Zimmermann; Maria Zimmermann-Kogadeeva; Rebekka Wegmann; Andrew L. Goodman
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Human gut Bacteroides capture vitamin B12 via cell surface-exposed lipoproteins

eLife
2018-09-18 | Journal article
DOI: 10.7554/eLife.37138
Contributors: Aaron G Wexler; Whitman B Schofield; Patrick H Degnan; Ewa Folta-Stogniew; Natasha A Barry; Andrew L Goodman
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