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Cas9‐Rep fusion tethers donor DNAin vivo and boosts the efficiency of HDR‐mediated genome editing

Plant Biotechnology Journal
2025-03-05 | Journal article
Contributors: Zhentao Zhou; Jiahui Xiao; Shuai Yin; Yache Chen; Yang Yuan; Jianwei Zhang; Lizhong Xiong; Kabin Xie
Source: check_circle
Crossref

Global Protein Interactome Mapping in Rice Using Barcode‐Indexed PCR Coupled with HiFi Long‐Read Sequencing

Advanced Science
2025-01-22 | Journal article
Part of ISSN: 2198-3844
Contributors: Xixi Liu; Dandan Xia; Jinjin Luo; Mengyuan Li; Lijuan Chen; Yiting Chen; Jie Huang; Yanan Li; Huayu Xu; Yang Yuan et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search

Engineering rice genomes towards green super rice

Current Opinion in Plant Biology
2024-12 | Journal article
Contributors: Jianwei Zhang; Jian Che; Yidan Ouyang
Source: check_circle
Crossref

Phenomics-assisted genetic dissection and molecular design of drought resistance in rice

Plant Communications
2024-12 | Journal article
Part of ISSN: 2590-3462
Contributors: Qiaojun Lou; Yunyu Chen; Xin Wang; Yulu Zhang; Tingting Gao; Jiawei Shi; Ming Yan; Fangjun Feng; Kai Xu; Feng Lin et al.
Source: Self-asserted source
Jianwei Zhang

The loach haplotype-resolved genome and the identification of Mex3a involved in fish air breathing

Cell Genomics
2024-10 | Journal article
Part of ISSN: 2666-979X
Contributors: Bing Sun; Qingshan Li; Xinxin Xiao; Jianwei Zhang; Ying Zhou; Yuwei Huang; Jian Gao; 曹小娟
Source: Self-asserted source
Jianwei Zhang

Chromosome-scale and haplotype-resolved genome assembly of the autotetraploid Misgurnus anguillicaudatus

Scientific Data
2024-09-28 | Journal article
Part of ISSN: 2052-4463
Contributors: Bing Sun; Qingshan Li; Yihui Mei; Yunbang Zhang; Yuxuan Zheng; Yuwei Huang; Xinxin Xiao; Jianwei Zhang; Gao Jian; 曹小娟
Source: Self-asserted source
Jianwei Zhang

Powerful QTL mapping and favorable allele mining in an all-in-one population: a case study of heading date

National Science Review
2024-07-12 | Journal article
Contributors: Pengfei Wang; Ying Yang; Daoyang Li; Zhichao Yu; Bo zhang; Xiangchun Zhou; Lizhong Xiong; Jianwei Zhang; Lei Wang; Yongzhong Xing
Source: check_circle
Crossref

High resolution mapping of a novel non-transgressive hybrid susceptibility locus in barley exploited by P. teres f. maculata

BMC Plant Biology
2024-06-29 | Journal article
Part of ISSN: 1471-2229
Contributors: Shaun J. Clare; Abdullah F. Alhashel; Mengyuan Li; Karl M. Effertz; Roshan Sharma Poudel; Jianwei Zhang; Robert S. Brueggeman
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search

ESKtides: a comprehensive database and mining method for ESKAPE phage-derived antimicrobial peptides

Database
2024-05-08 | Journal article
Contributors: Hongfang Wu; Rongxian Chen; Xuejian Li; Yue Zhang; Jianwei Zhang; Yanbo Yang; Jun Wan; Yang Zhou; Huanchun Chen; Jinquan Li et al.
Source: check_circle
Crossref

DEGAP: Dynamic elongation of a genome assembly path

Briefings in Bioinformatics
2024-03-27 | Journal article
Contributors: Yicheng Huang; Ziyuan Wang; Monica A Schmidt; Handong Su; Lizhong Xiong; Jianwei Zhang
Source: check_circle
Crossref

Whole‐genome sequencing of allotetraploid bermudagrass reveals the origin of <i>Cynodon</i> and candidate genes for salt tolerance

The Plant Journal
2024-03-26 | Journal article | Author
Part of ISSN: 1365-313X
Contributors: Huan Wang; Tilin Fang; Xiaoning Li; Yan Xie; Wei Wang; Tao Hu; David Kudrna; Erick Amombo; Yanling Yin; Shugao Fan et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search

A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset

BMC Biology
2024-01-25 | Journal article
Part of ISSN: 1741-7007
Contributors: Yong Zhou; Nagarajan Kathiresan; Zhichao Yu; Luis F. Rivera; Yujian Yang; Manjula Thimma; Keerthana Manickam; Dmytro Chebotarov; Ramil Mauleon; Kapeel Chougule et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Ribosome profiling reveals the translational landscape and allele-specific translational efficiency in rice

Plant Communications
2023 | Journal article
EID:

2-s2.0-85141973086

Part of ISSN: 25903462
Contributors: Zhu, X.-T.; Zhou, R.; Che, J.; Zheng, Y.-Y.; Tahir ul Qamar, M.; Feng, J.-W.; Zhang, J.; Gao, J.; Chen, L.-L.
Source: Self-asserted source
Jianwei Zhang via Scopus - Elsevier

A complete reference genome for the soybean cv Jack

Plant Communications
2023-11 | Journal article
Part of ISSN: 2590-3462
Contributors: Yicheng Huang; Dal-Hoe Koo; Yizhou Mao; Eliot M. Herman; Jianwei Zhang; monica schmidt
Source: Self-asserted source
Jianwei Zhang
grade
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Two haplotype-resolved genome assemblies for AAB allotriploid bananas provide insights into banana subgenome asymmetric evolution and Fusarium wilt control

Plant Communications
2023-11 | Journal article
Part of ISSN: 2590-3462
Contributors: Wen-Zhao Xie; Yu-Yu Zheng; Weidi He; Fangcheng Bi; Yaoyao Li; Tongxin Dou; Run Zhou; Yi-Xiong Guo; Guiming Deng; Wenhui Zhang et al.
Source: Self-asserted source
Jianwei Zhang
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<i>Oryza glumaepatula</i>: A wild relative to improve drought tolerance in cultivated rice

Plant Physiology
2023-09-04 | Journal article
Part of ISSN: 0032-0889
Contributors: Parthiban Thathapalli Prakash; Dmytro Chebotarov; Jianwei Zhang; David A Kudrna; Rolando O Torres; Mignon A Natividad; Marinell R Quintana; Jiaming Song; Carlos E Maldonado L; Sherry Lou Hechanova et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, <i>Oryza glaberrima</i> Steud

G3: Genes, Genomes, Genetics
2023-08-03 | Journal article
Part of ISSN: 2160-1836
Contributors: Fabrice Ntakirutimana; Christine Tranchant-Dubreuil; Philippe Cubry; Kapeel Chougule; Jianwei Zhang; Rod A Wing; Hélène Adam; Mathias Lorieux; Stefan Jouannic; Alexander Lipka
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice

Molecular Plant
2023-05 | Journal article | Author
Part of ISSN: 1674-2052
Contributors: Zhichao Yu; Yongming Chen; Yong Zhou; yulu zhang; Mengyuan Li; Yidan Ouyang; Dmytro Chebotarov; Ramil Mauleon; Hu Zhao; Weibo Xie et al.
Source: Self-asserted source
Jianwei Zhang
grade
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Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice

Nature Communications
2023-03 | Journal article
Part of ISSN: 2041-1723
Contributors: Yong Zhou; Zhichao Yu; Dmytro Chebotarov; Kapeel Chougule; Zhenyuan Lu; Luis F. Rivera; Nagarajan Kathiresan; Noor Al-Bader; Nahed Mohammed; Aseel Alsantely et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Fujian cytoplasmic male sterility and the fertility restorer gene <i>OsRf19</i> provide a promising breeding system for hybrid rice

Proceedings of the National Academy of Sciences
2022-08 | Journal article
Part of ISSN: 0027-8424
Contributors: Haichao Jiang; Qing Lu; Shuqing Qiu; Huihui Yu; Zhengji Wang; Zhichao Yu; Yunrui Lu; Lei Wang; Fan Xia; Yuying Wu et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Full-Length Transcriptome Sequencing Reveals Alternative Splicing and lncRNA Regulation during Nodule Development in <i>Glycine max</i>

International Journal of Molecular Sciences
2022-07 | Journal article | Author
Contributors: Jing Liu; Shengcai Chen; Min Liu; Yimian Chen; Wei Fan; Seunghee Lee; Han Xiao; Dave Kudrna; Zixin Li; Xu Chen et al.
Source: check_circle
Multidisciplinary Digital Publishing Institute
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Genome assembly of the JD17 soybean provides a new reference genome for Comparative genomics

G3 Genes|Genomes|Genetics
2022-02 | Journal article
Part of ISSN: 2160-1836
Contributors: Xinxin Yi; Jing Liu; Shengcai Chen; Hao Wu; Min Liu; Qing Xu; Lingshan Lei; Seunghee Lee; Bao Zhang; Dave Kudrna et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Two gap-free reference genomes and a global view of the centromere architecture in rice

Molecular Plant
2021-10 | Journal article
Part of ISSN: 1674-2052
Contributors: Jia-Ming Song; Wen-Zhao Xie; Shuo Wang; Yi-Xiong Guo; Dal-Hoe Koo; Dave Kudrna; Chenbo Gong; Yicheng Huang; Jia-Wu Feng; Wenhui Zhang et al.
Source: Self-asserted source
Jianwei Zhang
grade
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Phasing Analysis of Transcriptome and Epigenome in Rice Hybrid Reveals the Inheritance and Difference of DNA Methylation and Allelic Transcription Regulation

Plant Communications
2021-04 | Journal article
Part of ISSN: 2590-3462
Contributors: Jia-Wu Feng; Yue Lu; Lin Shao; Jianwei Zhang; Huan Li; Ling-Ling Chen
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
grade
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The chromosome‐scale reference genome of safflower ( Carthamus tinctorius ) provides insights into linoleic acid and flavonoid biosynthesis

Plant Biotechnology Journal
2021-03 | Journal article
Part of ISSN: 1467-7644
Contributors: Zhihua Wu; Hong Liu; Wei Zhan; Zhichao Yu; Erdai Qin; Shuo Liu; Tiange Yang; Niyan Xiang; Dave Kudrna; Yan Chen et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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A chromosome‐scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes

Plant Biotechnology Journal
2020-10-19 | Journal article
Part of ISSN: 1467-7644
Part of ISSN: 1467-7652
Source: Self-asserted source
Jianwei Zhang
grade
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A platinum standard pan-genome resource that represents the population structure of Asian rice

Scientific Data
2020-04-07 | Journal article
Part of ISSN: 2052-4463
Contributors: Yong Zhou; Dmytro Chebotarov; Dave Kudrna; Victor Llaca; Seunghee Lee; Shanmugam Rajasekar; Nahed Mohammed; Noor Al-Bader; Chandler Sobel-Sorenson; Praveena Parakkal et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Evolution and diversity of the wild rice Oryza officinalis complex, across continents genome types, and ploidy levels

Genome Biology and Evolution
2020-03-03 | Journal article
Part of ISSN: 1759-6653
Contributors: Matt Shenton; Masaaki Kobayashi; Shin Terashima; Hajime Ohyanagi; Dario Copetti; Tania Hernández-Hernández; Jianwei Zhang; Nobuko Ohmido; Masahiro Fujita; Atsushi Toyoda et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Genome-wide association mapping of date palm fruit traits

Nature Communications
2019-10 | Journal article
Part of ISSN: 2041-1723
Contributors: Khaled M. Hazzouri; Muriel Gros-Balthazard; Jonathan M. Flowers; Dario Copetti; Alain Lemansour; Marc Lebrun; Khaled Masmoudi; Sylvie Ferrand; Michael I. Dhar; Zoë A. Fresquez et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search

Rapid evolution of protein diversity by de novo origination in Oryza

Nature Ecology & Evolution
2019-03-11 | Journal article
Part of ISSN: 2397-334X
Contributors: Li Zhang; Yan Ren; Tao Yang; Guangwei Li; Jianhai Chen; Andrea R. Gschwend; Yeisoo Yu; Guixue Hou; Jin Zi; Ruo Zhou et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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CRISPR-PLANT v2: an online resource for highly specific guide RNA spacers based on improved off-target analysis

Plant Biotechnology Journal
2018 | Journal article
Part of ISSN: 1467-7644
Contributors: Bastian Minkenberg; Jianwei Zhang; Kabin Xie; Yinong Yang
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
grade
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Development of species diagnostic SNP markers for quality control genotyping in four rice (Oryza L.) species

Molecular Breeding
2018-10 | Journal article
Part of ISSN: 1380-3743
Contributors: Marie Noelle Ndjiondjop; Kassa Semagn; Jianwei Zhang; Arnaud Comlan Gouda; Sèdjro Bienvenu Kpeki; Alphonse Goungoulou; Peterson Wambugu; Khady Nani Dramé; Isaac Kofi Bimpong; Dule Zhao
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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ABC transporter mis-splicing associated with resistance to Bt toxin Cry2Ab in laboratory- and field-selected pink bollworm

Scientific Reports
2018-09-10 | Journal article
Part of ISSN: 2045-2322
Contributors: Lolita G. Mathew; Jeyakumar Ponnuraj; Bheemanna Mallappa; Lingutla R. Chowdary; Jianwei Zhang; Wee Tek Tay; Thomas K. Walsh; Karl H. J. Gordon; David G. Heckel; Sharon Downes et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
grade
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Identification and analysis of adenine N6-methylation sites in the rice genome

Nature Plants
2018-07 | Journal article
Part of ISSN: 2055-0278
Contributors: Chao Zhou; Changshi Wang; Hongbo Liu; Qiangwei Zhou; Qian Liu; Yan Guo; Ting Peng; Jiaming Song; Jianwei Zhang; Lingling Chen et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Genetic control of seed shattering during African rice domestication

Nature Plants
2018-06 | Journal article
Part of ISSN: 2055-0278
Contributors: Shuwei Lv; Wenguang Wu; Muhua Wang; Rachel S. Meyer; Marie-Noelle Ndjiondjop; Lubin Tan; Haiying Zhou; Jianwei Zhang; Yongcai Fu; Hongwei Cai et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
grade
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Genomic variation in 3,010 diverse accessions of Asian cultivated rice

Nature
2018-04 | Journal article
Part of ISSN: 0028-0836
Contributors: Wensheng Wang; Ramil Mauleon; Zhiqiang Hu; Dmytro Chebotarov; Shuaishuai Tai; Zhichao Wu; Min Li; Tianqing Zheng; Roven Rommel Fuentes; Fan Zhang et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

Nature Genetics
2018-01 | Journal article
Part of ISSN: 1061-4036
Contributors: Joshua C. Stein; Yeisoo Yu; Dario Copetti; Derrick J. Zwickl; Li Zhang; Chengjun Zhang; Kapeel Chougule; Dongying Gao; Aiko Iwata; Jose Luis Goicoechea et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Rice Information GateWay (RIGW): A Comprehensive Bioinformatics Platform for Indica Rice Genomes

Molecular Plant
2017-10 | Journal article
Part of ISSN: 1674-2052
Contributors: Jia-Ming Song; Yang Lei; Cheng-Cheng Shu; Yuduan Ding; Feng Xing; Hao Liu; Jia Wang; Weibo Xie; Jianwei Zhang; Ling-Ling Chen
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication

Nature Plants
2017-05-08 | Journal article
Contributors: Wenguang Wu; Xiaoyun Liu; Muhua Wang; Rachel S. Meyer; Xiaojin Luo; Marie-Noelle Ndjiondjop; Lubin Tan; Jianwei Zhang; Jianzhong Wu; Hongwei Cai et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Young inversion with multiple linked QTLs under selection in a hybrid zone

Nature Ecology & Evolution
2017-04-03 | Journal article
Contributors: Cheng-Ruei Lee; Baosheng Wang; Julius P. Mojica; Terezie Mandáková; Kasavajhala V. S. K. Prasad; Jose Luis Goicoechea; Nadeesha Perera; Uffe Hellsten; Hope N. Hundley; Jenifer Johnson et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Aflatoxin-free transgenic maize using host-induced gene silencing

Science Advances
2017-03 | Journal article
Contributors: Dhiraj Thakare; Jianwei Zhang; Rod A. Wing; Peter J. Cotty; Monica A. Schmidt
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Sequencing and comparative analysis of Aegilops tauschii chromosome arm 3DS reveal rapid evolution of Triticeae genomes

Journal of Genetics and Genomics
2016-10 | Journal article
Contributors: Jingzhong Xie; Naxin Huo; Shenghui Zhou; Yi Wang; Guanghao Guo; Karin R. Deal; Shuhong Ouyang; Yong Liang; Zhenzhong Wang; Lichan Xiao et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

Scientific Data
2016-09 | Journal article
Contributors: Jianwei Zhang; Ling-Ling Chen; Shuai Sun; Dave Kudrna; Dario Copetti; Weiming Li; Ting Mu; Wen-Biao Jiao; Feng Xing; Seunghee Lee et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Extensive sequence divergence between the reference genomes of two eliteindicarice varieties Zhenshan 97 and Minghui 63

Proceedings of the National Academy of Sciences
2016-08 | Journal article
Contributors: Jianwei Zhang; Ling-Ling Chen; Feng Xing; David A. Kudrna; Wen Yao; Dario Copetti; Ting Mu; Weiming Li; Jia-Ming Song; Weibo Xie et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences

Bioinformatics
2016-06 | Journal article
Contributors: Jianwei Zhang; Dave Kudrna; Ting Mu; Weiming Li; Dario Copetti; Yeisoo Yu; Jose Luis Goicoechea; Yang Lei; Rod A. Wing
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements

Genome Biology
2016-05-06 | Journal article
Contributors: Jun Wang; Yeisoo Yu; Feng Tao; Jianwei Zhang; Dario Copetti; Dave Kudrna; Jayson Talag; Seunghee Lee; Rod A. Wing; Chuanzhu Fan
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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RiTE database: a resource database for genus-wide rice genomics and evolutionary biology

BMC Genomics
2015-07 | Journal article
Contributors: Dario Copetti; Jianwei Zhang; Moaine El Baidouri; Dongying Gao; Jun Wang; Elena Barghini; Rosa M. Cossu; Angelina Angelova; Carlos E. Maldonado L.; Stefan Roffler et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
grade
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Genome-Wide Prediction of Highly Specific Guide RNA Spacers for CRISPR–Cas9-Mediated Genome Editing in Model Plants and Major Crops

Molecular Plant
2014-05 | Journal article
Contributors: Kabin Xie; Jianwei Zhang; Yinong Yang
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping

Genetics
2014-01 | Journal article
Contributors: X. Wang; D. A. Kudrna; Y. Pan; H. Wang; L. Liu; H. Lin; J. Zhang; X. Song; J. L. Goicoechea; R. A. Wing et al.
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Conservation and Purifying Selection of Transcribed Genes Located in a Rice Centromere

The Plant Cell
2011-08 | Journal article
Contributors: Chuanzhu Fan; Jason G. Walling; Jianwei Zhang; Cory D. Hirsch; Jiming Jiang; Rod A. Wing
Source: Self-asserted source
Jianwei Zhang via Crossref Metadata Search
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Peer review (3 reviews for 3 publications/grants)

Review activity for Cell reports. (1)
Review activity for Nature genetics. (1)
Review activity for Scientific data. (1)