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Works (8)

Growing Glycans in Rosetta: Accurate de novo glycan modeling, density fitting, and rational sequon design

PLOS Computational Biology
2024-06-24 | Journal article
Contributors: Jared Adolf-Bryfogle; Ozlem Keskin; Jason W. Labonte; John C. Kraft; Maxim Shapovalov; Sebastian Raemisch; Thomas Lütteke; Frank DiMaio; Christopher D. Bahl; Jesper Pallesen et al.
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EGGNet, a generalizable geometric deep learning framework for protein complex pose scoring

2023-03-22 | Preprint
Contributors: Zichen Wang; Ryan Brand; Jared Adolf-Bryfogle; Jasleen Grewal; Yanjun Qi; Steven A. Combs; Nataliya Golovach; Rebecca Alford; Huzefa Rangwala; Peter M. Clark
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Biochemical and structural characterization of two cif-like epoxide hydrolases from Burkholderia cenocepacia

Current Research in Structural Biology
2021 | Journal article
Contributors: Noor M. Taher; Kelli L. Hvorecny; Cassandra M. Burke; Morgan S.A. Gilman; Gary E. Heussler; Jared Adolf-Bryfogle; Christopher D. Bahl; George A. O'Toole; Dean R. Madden
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Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

Nature Communications
2021-11-29 | Journal article
Contributors: Julia Koehler Leman; Sergey Lyskov; Steven M. Lewis; Jared Adolf-Bryfogle; Rebecca F. Alford; Kyle Barlow; Ziv Ben-Aharon; Daniel Farrell; Jason Fell; William A. Hansen et al.
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Growing Glycans in Rosetta: Accurate de novo glycan modeling, density fitting, and rational sequon design

2021-09-27 | Other
Contributors: Jared Adolf-Bryfogle; Jason W. Labonte; John C. Kraft; Maxim Shapovalov; Sebastian Raemisch; Thomas Lütteke; Frank DiMaio; Christopher D. Bahl; Jesper Pallesen; Neil P. King et al.
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Toward complete rational control over protein structure and function through computational design

Current Opinion in Structural Biology
2021-02 | Journal article
Contributors: Jared Adolf-Bryfogle; Frank D Teets; Christopher D Bahl
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Hiding in plain sight: structure and sequence analysis reveals the importance of the antibody DE loop for antibody-antigen binding

2020-02-13 | Preprint
Contributors: Simon P. Kelow; Jared Adolf-Bryfogle; Roland L. Dunbrack, Jr.
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PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design

2020-02-07 | Preprint
Contributors: Kathy Le; Jared Adolf-Bryfogle; Jason Klima; Sergey Lyskov; Jason Labonte; Steven Bertolani; Shourya Roy Burman; Andrew Leaver-Fay; Brian Weitzner; Jack Maguire et al.
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Peer review (1 review for 1 publication/grant)

Review activity for Life. (1)