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Generative AI, deep generative modeling, deep learning, machine learning, artificial intelligence
Netherlands, Poland

Activities

Employment (6)

Vrije Universiteit Amsterdam: Amsterdam, NL

2025-02-28
Employment
Source: check_circle
Vrije Universiteit Amsterdam

Eindhoven University of Technology: N/A, NL

2025-01-31
Employment
Source: check_circle
Pure TUe

Vrije Universiteit Amsterdam: Amsterdam, Noord-Holland, NL

2019-11 to 2023-02 | Assistant professor (Computer Science)
Employment
Source: Self-asserted source
Jakub Tomczak

Qualcomm AI Research: Amsterdam, NL

2018-10 to 2019-12 | Deep learning researcher
Employment
Source: Self-asserted source
Jakub Tomczak

Universiteit van Amsterdam: Amsterdam, Noord-Holland, NL

2016-10-01 to 2018-09 (Institute of Informatics)
Employment
Source: Self-asserted source
Jakub Tomczak

Politechnika Wroclawska: Wroclaw, PL

2012-10-01 to 2016-09-31 (Department of Computer Science)
Employment
Source: Self-asserted source
Jakub Tomczak

Education and qualifications (2)

Vrije Universiteit Amsterdam: Amsterdam, NL

2021-07 to present | BKO
Qualification
Source: Self-asserted source
Jakub Tomczak

Politechnika Wroclawska: Wroclaw, Dolnośląskie, PL

2009-10-01 to 2013-03-26 | Ph.D. (Department of Computer Science)
Education
Source: Self-asserted source
Jakub Tomczak

Professional activities (1)

ELLIS: Amsterdam, NL

2021-11 to present | Member (ELLIS Amsterdam Unit)
Membership
Source: Self-asserted source
Jakub Tomczak

Funding (1)

Deep Learning and Bayesian Inference for Medical Imaging

2016-10 to 2018-09 | Grant
European Commission (Brussels, BE)
GRANT_NUMBER: 702666
Source: Self-asserted source
Jakub Tomczak

Works (50 of 65)

Items per page:
Page 1 of 2

Deep Generative Modeling: From Probabilistic Framework to Generative AI

Entropy
2025-02-26 | Journal article
Contributors: Jakub M. Tomczak
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

A Comparison of Controller Architectures and Learning Mechanisms for Arbitrary Robot Morphologies

2023 IEEE Symposium Series on Computational Intelligence (SSCI)
2024-01-01 | Conference paper | Author
SOURCE-WORK-ID:

1bc4adc8-90df-438b-bc0b-149679dc1696

EID:

2-s2.0-85182942613

Part of ISBN: 9781665430654
Contributors: Jie Luo; Jakub Tomczak; Karine Miras; Agoston Eiben
Source: check_circle
Vrije Universiteit Amsterdam

A-NESI

Advances in Neural Information Processing Systems 36 (NeurIPS 2023)
2023 | Conference paper | Author
SOURCE-WORK-ID:

6def541e-7962-4e52-bc2b-4c31a001fbd0

EID:

2-s2.0-85184967357

Contributors: Emile van Krieken; Thiviyan Thanapalasingam; Jakub Tomczak; Frank van Harmelen; Annette ten Teije
Source: check_circle
Vrije Universiteit Amsterdam

Learning Data Representations with Joint Diffusion Models

2023 | Book chapter
Contributors: Kamil Deja; Tomasz Trzciński; Jakub M. Tomczak
Source: check_circle
Crossref

Enhancing robot evolution through Lamarckian principles

Scientific Reports
2023-11-30 | Journal article | Author
SOURCE-WORK-ID:

b03f6f93-c676-4e21-aaf2-2529a67d912d

EID:

2-s2.0-85178202503

Contributors: Jie Luo; Karine Miras; Jakub Tomczak; Agoston Eiben
Source: check_circle
Vrije Universiteit Amsterdam

Exploring Continual Learning of Diffusion Models

arXiv
2023-03-27 | Journal article | Author
SOURCE-WORK-ID:

5c6a1d36-54fc-471d-9587-b64570e961e7

Contributors: Michał Zając; Kamil Deja; Anna Kuzina; Jakub Tomczak; Tomasz Trzciński; Florian Shkurti; Piotr Miłoś
Source: check_circle
Pure TUe

Analyzing the Posterior Collapse in Hierarchical Variational Autoencoders

CoRR
2023-02-20 | Journal article
SOURCE-WORK-ID:

e435d6c0-a384-43de-a4d6-05c8d4464c79

Contributors: Anna Kuzina; Jakub Tomczak
Source: check_circle
Pure TUe

The Effects of Learning in Morphologically Evolving Robot Systems

Frontiers in Robotics and AI
2022-05-27 | Journal article | Author
SOURCE-WORK-ID:

b7fdd942-c6ab-4b2d-bbf9-46b5fc3812d8

EID:

2-s2.0-85132389975

Contributors: Jie Luo; Aart C. Stuurman; Jakub Tomczak; Jacintha Ellers; Agoston Eiben
Source: check_circle
Vrije Universiteit Amsterdam
grade
Preferred source (of 2)‎

Time efficiency in optimization with a bayesian-Evolutionary algorithm

Swarm and Evolutionary Computation
2022-03 | Journal article
Contributors: Gongjin Lan; Jakub M. Tomczak; Diederik M. Roijers; A.E. Eiben
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Alleviating Adversarial Attacks on Variational Autoencoders with MCMC

arXiv
2022-03-18 | Journal article | Author
SOURCE-WORK-ID:

68cab3cf-5a19-4ea1-89f0-d3c2558c1b36

Contributors: Anna Kuzina; Max Welling; Jakub Tomczak
Source: check_circle
Pure TUe

Deep Generative Modeling

2022-02 | Book | Author
SOURCE-WORK-ID:

638a9fa5-9fc3-4aff-826d-1b45f8ffb7b4

EID:

2-s2.0-85161904715

Contributors: Jakub Tomczak
Source: check_circle
Pure TUe

Identification of ebselen and its analogues as potent covalent inhibitors of papain-like protease from SARS-CoV-2

Scientific Reports
2021-12 | Journal article | Author
SOURCE-WORK-ID:

33864980-59e6-4d5c-afe1-a67b326da89e

EID:

2-s2.0-85101082420

Contributors: Ewelina Weglarz-Tomczak; Jakub Tomczak; Michał Talma; Małgorzata Burda-Grabowska; Mirosław Giurg; Stanley Brul
Source: check_circle
Vrije Universiteit Amsterdam

Invertible DenseNets with Concatenated LipSwish

Advances in Neural Information Processing Systems 34 (NeurIPS 2021)
2021-12 | Conference paper | Author
SOURCE-WORK-ID:

822311c5-364a-444c-95e6-1fc3862694c0

EID:

2-s2.0-85131862066

Part of ISBN: 9781713845393
Contributors: Yura Perugachi-Diaz; Jakub Tomczak; Sandjai Bhulai
Source: check_circle
Vrije Universiteit Amsterdam

Storchastic: A Framework for General Stochastic Automatic Differentiation

Advances in Neural Information Processing Systems 34 (NeurIPS 2021)
2021-12 | Conference paper | Author
SOURCE-WORK-ID:

2f59a0c6-35d5-428d-9414-0b10f7618bea

EID:

2-s2.0-85131505148

Part of ISBN: 9781713845393
Contributors: Emile van Krieken; Jakub Tomczak; Annette ten Teije
Source: check_circle
Vrije Universiteit Amsterdam

Learning directed locomotion in modular robots with evolvable morphologies

Applied Soft Computing
2021-11 | Journal article | Author
SOURCE-WORK-ID:

b5137ea1-c1b6-4981-9eca-2a4c5deda36d

EID:

2-s2.0-85111048539

WOSUID:

000724665600007

Contributors: Gongjin Lan; Matteo De Carlo; Fuda van Diggelen; Jakub Tomczak; Diederik M. Roijers; Agoston Eiben
Source: check_circle
Vrije Universiteit Amsterdam
grade
Preferred source (of 2)‎

M2R: a Python add-on to cobrapy for modifying human genome-scale metabolic reconstruction using the gut microbiota models

Bioinformatics
2021-09-09 | Journal article
Contributors: Ewelina Weglarz-Tomczak; Jakub M. Tomczak; Stanley Brul; Teresa Przytycka
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Self-Supervised Variational Auto-Encoders

Entropy
2021-06-14 | Journal article
Contributors: Ioannis Gatopoulos; Jakub M. Tomczak
Source: check_circle
Crossref
grade
Preferred source (of 4)‎

Deep learning for white cabbage seedling prediction

Computers and Electronics in Agriculture
2021-05 | Journal article | Author
SOURCE-WORK-ID:

dbf7242e-535d-4f72-be12-c32f3860b0b3

EID:

2-s2.0-85103279230

Contributors: Yura Perugachi-Diaz; Jakub Tomczak; Sandjai Bhulai
Source: check_circle
Vrije Universiteit Amsterdam
grade
Preferred source (of 2)‎

Deep Learning and Transfer Learning for Automatic Cell Counting in Microscope Images of Human Cancer Cell Lines

Applied Sciences
2021-05-27 | Journal article
Contributors: Falko Lavitt; Demi J. Rijlaarsdam; Dennet van der Linden; Ewelina Weglarz-Tomczak; Jakub M. Tomczak
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Learning Locomotion Skills in Evolvable Robots

Neurocomputing
2021-03 | Journal article
Contributors: Gongjin Lan; Maarten van Hooft; Matteo De Carlo; Jakub M. Tomczak; A.E. Eiben
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Approximate Bayesian Computation for Discrete Spaces

Entropy
2021-03-06 | Journal article
Contributors: Ilze A. Auzina; Jakub M. Tomczak
Source: check_circle
Crossref
grade
Preferred source (of 4)‎

GEM-Based Metabolic Profiling for Human Bone Osteosarcoma under Different Glucose and Glutamine Availability

International Journal of Molecular Sciences
2021-02-02 | Journal article
Contributors: Ewelina Weglarz-Tomczak; Demi J. Rijlaarsdam; Jakub M. Tomczak; Stanley Brul
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Population-Based Parameter Identification for Dynamical Models of Biological Networks with an Application to Saccharomyces cerevisiae

Processes
2021-01-05 | Journal article
Contributors: Ewelina Weglarz-Tomczak; Jakub M. Tomczak; Agoston E. Eiben; Stanley Brul
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Attentive group equivariant convolutional networks

Proceedings of the 37th International Conference on Machine Learning [Online]
2020-07-13 | Conference paper | Author
SOURCE-WORK-ID:

69d1f6fa-a2f1-4026-9164-3f82d8bb1736

Contributors: David Romero; Erik Bekkers; Jakub Tomczak; Mark Hoogendoorn
Source: check_circle
Vrije Universiteit Amsterdam

Differential Evolution with Reversible Linear Transformations

GECCO '20
2020-07-08 | Conference paper | Author
SOURCE-WORK-ID:

25656031-fb10-452c-bf97-cd6432bdad4d

EID:

2-s2.0-85089728474

Part of ISBN: 9781450371278
Contributors: Jakub Tomczak; Ewelina Wȩglarz-Tomczak; Agoston Eiben
Source: check_circle
Vrije Universiteit Amsterdam

Estimating kinetic constants in the Michaelis–Menten model from one enzymatic assay using Approximate Bayesian Computation

FEBS Letters
2019-10 | Journal article
Contributors: Jakub M. Tomczak; Ewelina Węglarz‐Tomczak
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Low-Dimensional Perturb-and-MAP Approach for Learning Restricted Boltzmann Machines

Neural Processing Letters
2019-10-01 | Journal article | Author
SOURCE-WORK-ID:

0138b76b-be25-45ce-8739-79e48cc59884

EID:

2-s2.0-85054498287

Contributors: Jakub Tomczak; Szymon Zaręba; Siamak Ravanbakhsh; Russell Greiner
Source: check_circle
Vrije Universiteit Amsterdam
grade
Preferred source (of 2)‎

DIVA

2019 Deep Generative Models for Highly Structured Data, DGS@ICLR 2019 Workshop, New Orleans, United States, 6/05/19
2019-01-01 | Conference paper | Author
SOURCE-WORK-ID:

8ddd382d-4f08-453b-8ede-07e383d4c9ed

Contributors: Maximilian Ilse; Jakub Tomczak; Christos Louizos; Max Welling
Source: check_circle
Vrije Universiteit Amsterdam

Helix-loop-helix peptide foldamers and their use in the construction of hydrolase mimetics

Bioorganic Chemistry
2018-12-01 | Journal article | Author
SOURCE-WORK-ID:

b2e91cb3-1100-4447-af0a-e572287d0c8e

EID:

2-s2.0-85052900151

Contributors: Magda Drewniak; Ewelina Węglarz-Tomczak; Katarzyna Ożga; Ewa Rudzińska-Szostak; Katarzyna Macegoniuk; Jakub Tomczak; Magdalena Bejger; Wojciech Rypniewski; Łukasz Berlicki
Source: check_circle
Vrije Universiteit Amsterdam

Interaction prediction in structure-based virtual screening using deep learning

Computers in Biology and Medicine
2018-09-01 | Journal article | Author
SOURCE-WORK-ID:

ee76ab81-5d13-48b4-8d6a-eab0250e4398

EID:

2-s2.0-85029575583

Contributors: Adam Gonczarek; Jakub Tomczak; Szymon Zaręba; Joanna Kaczmar; Piotr Dąbrowski; Michał J. Walczak
Source: check_circle
Vrije Universiteit Amsterdam

Attention-based deep multiple instance learning

35th International Conference on Machine Learning, ICML 2018
2018-01-01 | Conference paper | Author
SOURCE-WORK-ID:

e103e085-8a5f-47d4-901c-e719427388af

EID:

2-s2.0-85057238355

Part of ISBN: 9781510867963
Contributors: Maximilian Ilse; Jakub Tomczak; Max Welling
Source: check_circle
Vrije Universiteit Amsterdam

Hyperspherical variational auto-encoders

34th Conference on Uncertainty in Artificial Intelligence 2018, UAI 2018
2018-01-01 | Conference paper | Author
SOURCE-WORK-ID:

53abf4f0-7be0-4110-be94-b1049ba99c9c

EID:

2-s2.0-85059358491

Part of ISBN: 9781510871601
Contributors: Tim R. Davidson; Luca Falorsi; Nicola De Cao; Thomas Kipf; Jakub Tomczak
Source: check_circle
Vrije Universiteit Amsterdam

Sylvester normalizing flows for variational inference

34th Conference on Uncertainty in Artificial Intelligence 2018, UAI 2018
2018-01-01 | Conference paper | Author
SOURCE-WORK-ID:

74041561-b217-44fb-b26b-eea08085dea0

EID:

2-s2.0-85059413595

Part of ISBN: 9781510871601
Contributors: Rianne Van Den Berg; Leonard Hasenclever; Jakub Tomczak; Max Welling
Source: check_circle
Vrije Universiteit Amsterdam

VAE with a vampprior

21st International Conference on Artificial Intelligence and Statistics, AISTATS 2018, Playa Blanca, Lanzarote, Canary Islands, Spain, 9/04/18
2018-01-01 | Conference paper | Author
SOURCE-WORK-ID:

30dda912-7d08-48f0-bfca-8eccac72cc79

Contributors: Jakub Tomczak; Max Welling
Source: check_circle
Vrije Universiteit Amsterdam

Domain adaptation for image analysis

Advances in Systems Science - Proceedings of the International Conference on Systems Science 2016, ICSS 2016
2017-01-01 | Conference paper | Author
SOURCE-WORK-ID:

3e4c0984-a993-4cff-9483-ff25a277eccb

EID:

2-s2.0-84996503627

Part of ISBN: 9783319489438
Contributors: Szymon Zaręba; Marcin Kocot; Jakub Tomczak
Source: check_circle
Vrije Universiteit Amsterdam

Gaussian process regression with categorical inputs for predicting the blood glucose level

Advances in Systems Science - Proceedings of the International Conference on Systems Science 2016, ICSS 2016
2017-01-01 | Conference paper | Author
SOURCE-WORK-ID:

ded0143a-300c-44b0-a875-3f3978ee16e0

EID:

2-s2.0-84996593817

Part of ISBN: 9783319489438
Contributors: Jakub Tomczak
Source: check_circle
Vrije Universiteit Amsterdam

Preface

Advances in Intelligent Systems and Computing
2017-01-01 | Other | Author
SOURCE-WORK-ID:

a5baeb58-42fe-49b0-83cf-33f65c8b15dc

EID:

2-s2.0-84996566951

Contributors: Jerzy Świątek; Jakub Tomczak; Adam Gonczarek; Maciej Zięba; Adam Grzech; Paweł Świątek; Grzegorz Filcek; Maciej Hojda; Dariusz Gąsior
Source: check_circle
Vrije Universiteit Amsterdam

Self-paced learning for imbalanced data

Intelligent Information and Database Systems - 8th Asian Conference, ACIIDS 2016, Proceedings
2016-01-01 | Conference paper | Author
SOURCE-WORK-ID:

f3a1ec84-0841-4ce9-be32-d1314a7f9ae3

EID:

2-s2.0-84961223658

Part of ISBN: 9783662493809
Contributors: Maciej Zięba; Jakub Tomczak; Jerzy Świątek
Source: check_circle
Vrije Universiteit Amsterdam

Accelerated learning for Restricted Boltzmann Machine with momentum term

Progress in Systems Engineering - Proceedings of the 23rd International Conference on Systems Engineering
2015-01-01 | Conference paper | Author
SOURCE-WORK-ID:

e5ffee5b-c9f1-457a-9e6e-7236cd813cd4

EID:

2-s2.0-84906535729

Part of ISBN: 9783319084213
Contributors: Szymon Zareba; Adam Gonczarek; Jakub Tomczak; Jerzy Światek
Source: check_circle
Vrije Universiteit Amsterdam

RBM-SMOTE

Intelligent Information and Database Systems - 7th Asian Conference, ACIIDS 2015, Proceedings
2015-01-01 | Conference paper | Author
SOURCE-WORK-ID:

4a35af5e-1ab3-4fa2-88bb-78859eccef24

EID:

2-s2.0-84925265283

Part of ISBN: 9783319157016
Contributors: Maciej Zięba; Jakub Tomczak; Adam Gonczarek
Source: check_circle
Vrije Universiteit Amsterdam

Selecting right questions with Restricted Boltzmann Machines

Progress in Systems Engineering - Proceedings of the 23rd International Conference on Systems Engineering
2015-01-01 | Conference paper | Author
SOURCE-WORK-ID:

2d87a181-9489-4640-8de4-1a22d2c19668

EID:

2-s2.0-84906536300

Part of ISBN: 9783319084213
Contributors: Maciej Zieba; Jakub Tomczak; Krzysztof Brzostowski
Source: check_circle
Vrije Universiteit Amsterdam

Sparse hidden units activation in Restricted Boltzmann Machine

Progress in Systems Engineering - Proceedings of the 23rd International Conference on Systems Engineering
2015-01-01 | Conference paper | Author
SOURCE-WORK-ID:

e17b74cd-b5e3-4775-b7a5-5a49cc37b89f

EID:

2-s2.0-84906544877

Part of ISBN: 9783319084213
Contributors: Jakub Tomczak; Adam Gonczarek
Source: check_circle
Vrije Universiteit Amsterdam

Application of classification restricted boltzmann machine to medical domains

World Applied Sciences Journal
2014-01-01 | Journal article | Author
SOURCE-WORK-ID:

9530aa4c-849f-4668-b8e1-d92935ad686a

EID:

2-s2.0-84975529128

Contributors: Jakub Tomczak
Source: check_circle
Vrije Universiteit Amsterdam

Associative learning using ising-like model

Advances in Systems Science - Proceedings of the International Conference on Systems Science, ICSS 2013
2014-01-01 | Conference paper | Author
SOURCE-WORK-ID:

e26565e6-6c02-4b08-aabc-9350d0f5a37c

EID:

2-s2.0-84916207758

Part of ISBN: 9783319018560
Contributors: Jakub Tomczak
Source: check_circle
Vrije Universiteit Amsterdam

Manifold regularized particle filter for articulated human motion tracking

Advances in Systems Science - Proceedings of the International Conference on Systems Science, ICSS 2013
2014-01-01 | Conference paper | Author
SOURCE-WORK-ID:

a245f1ad-228d-4930-b401-84262ed27afb

EID:

2-s2.0-84916238609

Part of ISBN: 9783319018560
Contributors: Adam Gonczarek; Jakub Tomczak
Source: check_circle
Vrije Universiteit Amsterdam

On-line Bayesian context change detection in Web service systems

HotTopiCS 2013 - Proceedings of the 2013 International Workshop on Hot Topics in Cloud Services
2013-07-10 | Conference paper | Author
SOURCE-WORK-ID:

d41adea3-1451-4f02-9c94-3317265c2674

EID:

2-s2.0-84879743068

Part of ISBN: 9781450320511
Contributors: Jakub Tomczak; Maciej Ziȩba
Source: check_circle
Vrije Universiteit Amsterdam

A probabilistic approach to structural change prediction in evolving social networks

Proceedings of the 2012 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2012
2012-12-01 | Conference paper | Author
SOURCE-WORK-ID:

a7df3dc6-5f89-4db1-acbb-7b1fffa63685

EID:

2-s2.0-84874238598

Part of ISBN: 9780769547992
Contributors: Krzysztof Juszczyszyn; Adam Gonczarek; Jakub Tomczak; Katarzyna Musial; Marcin Budka
Source: check_circle
Vrije Universiteit Amsterdam

Development of service composition by applying ICT service mapping

Computer Networks - 19th International Conference, CN 2012, Proceedings
2012-07-23 | Conference paper | Author
SOURCE-WORK-ID:

afa945e4-dbcd-409f-8e3f-32aeb61cd710

EID:

2-s2.0-84863899242

Part of ISBN: 9783642312168
Contributors: Jakub Tomczak; Katarzyna Cieślińska; Michał Pleszkun
Source: check_circle
Vrije Universiteit Amsterdam

On-line change detection for resource allocation in service-oriented systems

Technological Innovation for Value Creation - Third IFIP WG 5.5/SOCOLNET Doctoral Conference on Computing, Electrical and Industrial Systems, DoCEIS 2012, Proceedings
2012-07-02 | Conference paper | Author
SOURCE-WORK-ID:

e5a5b091-4c38-46c2-baac-44973f1330ac

EID:

2-s2.0-84861794559

Part of ISBN: 9783642282546
Contributors: Jakub Tomczak
Source: check_circle
Vrije Universiteit Amsterdam

Context change detection for resource allocation in service-oriented systems

Knowledge-Based and Intelligent Information and Engineering Systems - 15th International Conference, KES 2011, Proceedings
2011-09-29 | Conference paper | Author
SOURCE-WORK-ID:

d285352e-8700-45b7-ac8f-440deac226b0

EID:

2-s2.0-80053139796

Part of ISBN: 9783642238628
Contributors: Piotr Rygielski; Jakub Tomczak
Source: check_circle
Vrije Universiteit Amsterdam
Items per page:
Page 1 of 2

Peer review (1 review for 1 publication/grant)

Review activity for Nature communications (1)