Personal information

Microbial Ecology
Japan

Activities

Employment (1)

京都大学 / Kyoto University: 京都市左京区 / Sakyo, Kyoto, JP

2020-11-04 to present | 助教 / Assistant Professor (化学研究所 / Institute for Chemical Research (ICR))
Employment
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Kyoto University

Works (11)

Spatiotemporal dynamics of giant viruses within a deep freshwater lake reveal a distinct dark-water community

2024-09-21 | Other
Contributors: Yusuke Okazaki; Liwen Zhang; Lingjie Meng; Yue Fang; Hiroyuki Ogata
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Crossref

Gene Transfer Among Viruses Substantially Contributes to Gene Gain of Giant Viruses

Molecular Biology and Evolution
2024-08-02 | Journal article
Contributors: Junyi Wu; Lingjie Meng; Morgan Gaïa; Hiroyuki Hikida; Yusuke Okazaki; Hisashi Endo; Hiroyuki Ogata; Fabia Ursula Battistuzzi
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Crossref

Contrasting defense strategies of oligotrophs and copiotrophs revealed by single-cell-resolved virus–host pairing of freshwater bacteria

2024-07-24 | Preprint
Contributors: Yusuke Okazaki; Yohei Nishikawa; Ryota Wagatsuma; Haruko Takeyama; Shin-ichi Nakano
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Crossref

Long-Read-Resolved, Ecosystem-Wide Exploration of Nucleotide and Structural Microdiversity of Lake Bacterioplankton Genomes

mSystems
2022-08-30 | Journal article
Contributors: Yusuke Okazaki; Shin-ichi Nakano; Atsushi Toyoda; Hideyuki Tamaki; Simon Lax
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Crossref

Long-read-resolved, ecosystem-wide exploration of nucleotide and structural microdiversity of lake bacterioplankton genomes

2022-03-23 | Preprint
Contributors: Yusuke Okazaki; Shin-ichi Nakano; Atsushi Toyoda; Hideyuki Tamaki
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Crossref

Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing

Microbiome
2021-01-22 | Journal article
Contributors: Yusuke Okazaki; Shohei Fujinaga; Michaela M. Salcher; Cristiana Callieri; Atsushi Tanaka; Ayato Kohzu; Hideo Oyagi; Hideyuki Tamaki; Shin-ichi Nakano
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Crossref

Describing macroecological patterns in microbes: Approaches for comparative analyses of operational taxonomic unit read number distribution with a case study of global oceanic bacteria

Environmental DNA
2020-10 | Journal article
Contributors: Ryosuke Nakadai; Yusuke Okazaki; Shunsuke Matsuoka
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Crossref

Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing

2020-06-04 | Preprint
Contributors: Yusuke Okazaki; Shohei Fujinaga; Michaela M. Salcher; Cristiana Callieri; Atsushi Tanaka; Ayato Kohzu; Hideo Oyagi; Hideyuki Tamaki; Shin-ichi Nakano
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Crossref

Genome‐resolved viral and cellular metagenomes revealed potential key virus‐host interactions in a deep freshwater lake

Environmental Microbiology
2019-12 | Journal article
Contributors: Yusuke Okazaki; Yosuke Nishimura; Takashi Yoshida; Hiroyuki Ogata; Shin‐ichi Nakano
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Crossref

Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake

2019-05-31 | Other
Contributors: Yusuke Okazaki; Yosuke Nishimura; Takashi Yoshida; Hiroyuki Ogata; Shin-ichi Nakano
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Crossref

Ubiquity and quantitative significance of bacterioplankton lineages inhabiting the oxygenated hypolimnion of deep freshwater lakes

2016-11-21 | Preprint
Contributors: Yusuke Okazaki; Shohei Fujinaga; Atsushi Tanaka; Ayato Kohzu; Hideo Oyagi; Shin-ichi Nakano
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Crossref

Peer review (6 reviews for 5 publications/grants)

Review activity for Aquatic sciences : (1)
Review activity for Communications biology. (1)
Review activity for Limnology. (2)
Review activity for Nature communications (1)
Review activity for Scientific data. (1)