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India

Activities

Employment (2)

National Centre for Biological Sciences: Bangalore, Karnataka, IN

2018-07 to present | Assistant Professor (Reader-F)
Employment
Source: Self-asserted source
Radhakrishnan Sabarinathan

Universitat Pompeu Fabra: Barcelona, Catalunya, ES

2014-09-01 to 2018-04 | Post-doctoral researcher (Biomedical Genomics Group)
Employment
Source: Self-asserted source
Radhakrishnan Sabarinathan

Education and qualifications (1)

University of Copenhagen: Copenhagen, DK

2010-09-01 to 2014-06-31 | PhD (Center for non-coding RNA in Technology and Health (RTH))
Education
Source: Self-asserted source
Radhakrishnan Sabarinathan

Works (43)

Immunoproteasome as a biomarker for immunotherapy

Nature Reviews Cancer
2025-01 | Journal article
Contributors: Radhakrishnan Sabarinathan
Source: check_circle
Crossref

Novel nanopore sequencing method for determining Human Papillomavirus integrations in tumors without the need for whole genome sequencing

2024-10-19 | Preprint
Contributors: Preetiparna Parida; Nivedita Mukherjee; Agastya Singh; Shirley Lewis; Krishna Sharan; Sandeep Mallya; Ashima Singh; Mahadev Rao; Daniel S. Higginson; Radhakrishnan Sabarinathan et al.
Source: check_circle
Crossref

Collective amoeboid dynamics drives colonization of drug-resistant ovarian cancer cells

2024-10-06 | Preprint
Contributors: Shyamili Goutham; Anchita Gopikrishnan; BV Harshavardhan; Nivedhya Venas; Radhakrishnan Sabarinathan; Mohit Kumar Jolly; Ramray Bhat
Source: check_circle
Crossref

Cis‐regulatory effect of HPV integration is constrained by host chromatin architecture in cervical cancers

Molecular Oncology
2024-05 | Journal article
Contributors: Anurag Kumar Singh; Kaivalya Walavalkar; Daniele Tavernari; Giovanni Ciriello; Dimple Notani; Radhakrishnan Sabarinathan
Source: check_circle
Crossref

Replication stress underlies genomic instability at CTCF/cohesin-binding sites in cancer

2023-10-27 | Preprint
Contributors: Elangoli Ebrahimkutty Faseela; Dimple Notani; Radhakrishnan Sabarinathan
Source: check_circle
Crossref

Prognostic association of immunoproteasome expression in solid tumours is governed by the immediate immune environment

Molecular Oncology
2023-06 | Journal article
Contributors: Rahul Kumar; Bhavya Dhaka; Sarthak Sahoo; Mohit Kumar Jolly; Radhakrishnan Sabarinathan
Source: check_circle
Crossref

Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries

Genome Research
2023-01 | Journal article
Contributors: Zubairul Islam; Bharath Saravanan; Kaivalya Walavalkar; Umer Farooq; Anurag Kumar Singh; Sabarinathan Radhakrishnan; Jitendra Thakur; Awadhesh Pandit; Steven Henikoff; Dimple Notani
Source: check_circle
Crossref

Cis-regulatory effect of HPV integration is constrained by host chromatin architecture in cervical cancers

2022-11-28 | Preprint
Contributors: Anurag Kumar Singh; Kaivalya Walavalkar; Daniele Tavernari; Giovanni Ciriello; Dimple Notani; Radhakrishnan Sabarinathan
Source: check_circle
Crossref

Prognostic association of immunoproteasome expression in solid tumours is governed by the immediate immune environment

2022-09-01 | Preprint
Contributors: Rahul Kumar; Bhavya Dhaka; Sarthak Sahoo; Mohit Kumar Jolly; Radhakrishnan Sabarinathan
Source: check_circle
Crossref

Haplotype-aware single-cell multiomics uncovers functional effects of somatic structural variation

2021-11-13 | Other
Contributors: Hyobin Jeong; Karen Grimes; Peter-Martin Bruch; Tobias Rausch; Patrick Hasenfeld; Radhakrishnan Sabarinathan; David Porubsky; Sophie A. Herbst; Büşra Erarslan-Uysal; Johann-Christoph Jann et al.
Source: check_circle
Crossref

Active enhancers strengthen insulation by RNA-mediated CTCF binding at TAD boundaries

2021-07-14 | Preprint
Contributors: Zubairul Islam; Bharath Saravanan; Kaivalya Walavalkar; Jitendra Thakur; Umer Farooq; Anurag Kumar Singh; Radhakrishnan Sabarinathan; Awadhesh Pandit; Steven Henikoff; Dimple Notani
Source: check_circle
Crossref

A comprehensive profile of genomic variations in the SARS-CoV-2 isolates from the state of Telangana, India

Journal of General Virology
2021-02-10 | Journal article
Contributors: Asmita Gupta; Radhakrishnan Sabarinathan; Pratyusha Bala; Vinay Donipadi; Divya Vashisht; Madhumohan Rao Katika; Manohar Kandakatla; Debashis Mitra; Ashwin Dalal; Murali Dharan Bashyam
Source: check_circle
Crossref

Variable interplay of UV-induced DNA damage and repair at transcription factor binding sites

Nucleic Acids Research
2021-01-25 | Journal article
Contributors: Joan Frigola; Radhakrishnan Sabarinathan; Abel Gonzalez-Perez; Nuria Lopez-Bigas
Source: check_circle
Crossref

Differential chromatin accessibility landscape of gain-of-function mutant p53 tumours

2020-11-24 | Preprint
Contributors: Bhavya Dhaka; Radhakrishnan Sabarinathan
Source: check_circle
Crossref

Mutational landscape and dominant lineages in the SARS-CoV-2 infections in the state of Telangana, India

2020-08-26 | Other
Contributors: Asmita Gupta; Radhakrishnan Sabarinathan; Pratyusha Bala; Vinay Donipadi; Divya Vashisht; Madhumohan Rao Katika; Manohar Kandakatla; Debashis Mitra; Ashwin Dalal; Murali Dharan Bashyam
Source: check_circle
Crossref

Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures

Genes
2018-12 | Journal article | Author
Contributors: Radhakrishnan Sabarinathan; Christian Anthon; Jan Gorodkin; Stefan E. Seemann
Source: check_circle
Multidisciplinary Digital Publishing Institute
grade
Preferred source (of 2)‎

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

2017-12-23 | Other
Contributors: Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Pedersen; Lars Feuerbach; Radhakrishnan Sabarinathan; Tobias Madsen et al.
Source: check_circle
Crossref

A pan-cancer landscape of interactions between solid tumors and infiltrating immune cell populations

2017-09-21 | Preprint
Contributors: David Tamborero; Carlota Rubio-Perez; Ferran Muiños; Sabarinathan Radhakrishnan; Josep M Piulats; Aura Muntasell; Rodrigo Dienstmann; Nuria Lopez-Bigas; Abel Gonzalez-Perez
Source: check_circle
Crossref

The whole-genome panorama of cancer drivers

2017-09-20 | Preprint
Contributors: Radhakrishnan Sabarinathan; Oriol Pich; Iñigo Martincorena; Carlota Rubio-Perez; Malene Juul; Jeremiah Wala; Steven Schumacher; Ofer Shapira; Nikos Sidiropoulos; Sebastian M. Waszak et al.
Source: check_circle
Crossref

Nucleotide excision repair is impaired by binding of transcription factors to DNA

2015-10-13 | Report
Source: check_circle
Crossref

Simultaneous DNA and RNA Mapping of Somatic Mitochondrial Mutations across Diverse Human Cancers.

2015-06 | Journal article
DOI:

10.1371/journal.pgen.1005333

PMID:

26125550

PMC:

PMC4488357

Contributors: Stewart JB; Alaei-Mahabadi B; Sabarinathan R; Samuelsson T; Gorodkin J; Gustafsson CM; Larsson E
Source: Self-asserted source
Radhakrishnan Sabarinathan via Europe PubMed Central

Profiling of ribose methylations in RNA by high-throughput sequencing.

2015-01 | Journal article
DOI:

10.1002/anie.201408362

PMID:

25417815

Contributors: Birkedal U; Christensen-Dalsgaard M; Krogh N; Sabarinathan R; Gorodkin J; Nielsen H
Source: Self-asserted source
Radhakrishnan Sabarinathan via Europe PubMed Central

Interactome analyses of Salmonella pathogenicity islands reveal SicA indispensable for virulence

2014 | Journal article
DOI:

10.1016/j.jtbi.2014.08.013

EID:

2-s2.0-84907559664

Contributors: Lahiri, C.; Pawar, S.; Sabarinathan, R.; Ashraf, M.I.; Chand, Y.; Chakravortty, D.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

Transcriptome-wide analysis of UTRs in non-small cell lung cancer reveals cancer-related genes with SNV-induced changes on RNA secondary structure and miRNA target sites

2014 | Journal article
DOI:

10.1371/journal.pone.0082699

EID:

2-s2.0-84897410906

Contributors: Sabarinathan, R.; Wenzel, A.; Novotny, P.; Tang, X.; Kalari, K.R.; Gorodkin, J.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

Comparative genomics reveals 'novel' Fur regulated sRNAs and coding genes in diverse proteobacteria

2013 | Journal article
DOI:

10.1016/j.gene.2012.12.057

EID:

2-s2.0-84873256513

Contributors: Sridhar, J.; Sabarinathan, R.; Gunasekaran, P.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

RNAsnp: Efficient Detection of Local RNA Secondary Structure Changes Induced by SNPs

2013 | Journal article
DOI:

10.1002/humu.22273

EID:

2-s2.0-84875535693

Contributors: Sabarinathan, R.; Tafer, H.; Seemann, S.E.; Hofacker, I.L.; Stadler, P.F.; Gorodkin, J.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

The RNAsnp web server: predicting SNP effects on local RNA secondary structure.

2013 | Journal article
DOI:

10.1093/nar/gkt291

EID:

2-s2.0-84883588956

Contributors: Sabarinathan, R.; Tafer, H.; Seemann, S.E.; Hofacker, I.L.; Stadler, P.F.; Gorodkin, J.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

As 3p: A fast algorithm to search structurally similar proteins

2012 | Book
DOI:

10.1007/978-3-642-31837-5_24

EID:

2-s2.0-84865045724

Contributors: Rohit, S.; Akshaya, R.; Sabarinathan, R.; Vaishnavi, M.K.; Sherlin, D.; Gurusaran, M.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

Biomat _dbase: A database on biomaterials

2012 | Journal article
DOI:

10.2174/1875043501205010059

EID:

2-s2.0-84881347737

Contributors: Subia, B.; Mukherjee, S.; Bahadur, R.P.; Correlo, V.M.; Reis, R.L.; Sabarinathan, R.; Sekar, K.; Kundu, S.C.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

Fragment Finder 2.0: A computing server to identify structurally similar fragments

2012 | Journal article
DOI:

10.1107/S0021889812001501

EID:

2-s2.0-84859742441

Contributors: Nagarajan, R.; Siva Balan, S.; Sabarinathan, R.; Kirti Vaishnavi, M.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

BSSB: BLAST server for structural biologists

2011 | Journal article
DOI:

10.1107/S0021889811008387

EID:

2-s2.0-79956321272

Contributors: Uthayakumar, M.; Sowmiya, G.; Sabarinathan, R.; Udayaprakash, N.; Kirti Vaishnavi, M.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

Junker: An Intergenic Explorer for Bacterial Genomes

2011 | Journal article
DOI:

10.1016/S1672-0229(11)60021-1

EID:

2-s2.0-84255170497

Contributors: Sridhar, J.; Sabarinathan, R.; Balan, S.S.; Rafi, Z.A.; Gunasekaran, P.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

Water-mediated ionic interactions in protein structures

2011 | Journal article
DOI:

10.1007/s12038-011-9067-4

EID:

2-s2.0-80053533328

Contributors: Sabarinathan, R.; Aishwarya, K.; Sarani, R.; Vaishnavi, M.K.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

An algorithm to find all identical motifs in multiple biological sequences

2010 | Book
DOI:

10.1007/978-3-642-16001-1_12

EID:

2-s2.0-78049471355

Contributors: Bindal, A.K.; Sabarinathan, R.; Sridhar, J.; Sherlin, D.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

An algorithm to find distant repeats in a pair of protein sequences

2010 | Journal article
DOI:

10.1016/j.patrec.2010.04.010

EID:

2-s2.0-77956343482

Contributors: Sabarinathan, R.; Banerjee, N.; Balakrishnan, N.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

Evolution, homology conservation, and identification of unique sequence signatures in GH19 family chitinases

2010 | Journal article
DOI:

10.1007/s00239-010-9345-z

EID:

2-s2.0-77954423394

Contributors: Udaya Prakash, N.A.; Jayanthi, M.; Sabarinathan, R.; Kangueane, P.; Mathew, L.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

FAIR: A server for internal sequence repeats.

2010 | Journal article
DOI:

10.6026/97320630004271

PMID:

20978598

PMC:

PMC2957760

Contributors: Senthilkumar R; Sabarinathan R; Hameed BS; Banerjee N; Chidambarathanu N; Karthik R; Sekar K
Source: Self-asserted source
Radhakrishnan Sabarinathan via Europe PubMed Central

MLDB: Macromolecule ligand database

2010 | Journal article
DOI:

10.1107/S0021889809048626

EID:

2-s2.0-75649099368

Contributors: Saravanan, S.E.; Karthi, R.; Sathish, K.; Kokila, K.; Sabarinathan, R.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

ProSTRIP: A method to find similar structural repeats in three-dimensional protein structures

2010 | Journal article
DOI:

10.1016/j.compbiolchem.2010.03.006

EID:

2-s2.0-77953285175

Contributors: Sabarinathan, R.; Basu, R.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

sRNAscanner: A computational tool for intergenic small RNA detection in bacterial genomes

2010 | Journal article
DOI:

10.1371/journal.pone.0011970

EID:

2-s2.0-77957788941

Contributors: Sridhar, J.; Narmada, S.R.; Sabarinathan, R.; Ou, H.-Y.; Deng, Z.; Sekar, K.; Rafi, Z.A.; Rajakumar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

An algorithm to find similar internal sequence repeats

2009 | Journal article
EID:

2-s2.0-71849091561

Contributors: Banerjee, N.; Chidambarathanu, N.; Sabarinathan, R.; Michael, D.; Vasuki Ranjani, C.; Balakrishnan, N.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

BSDD-2.0: Biomolecules Segment Display Device - An updated web accessible computing resource

2009 | Journal article
EID:

2-s2.0-69249182247

Contributors: Kumar, S.; Praveen, S.; Karthi, R.; Sabarinathan, R.; Kalaivani, M.; Sathiyamoorthy, S.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

CSSP (Consensus Secondary Structure Prediction): A web-based server for structural biologists

2009 | Journal article
DOI:

10.1107/S0021889808043847

EID:

2-s2.0-62649095782

Contributors: Gupta, A.; Deshpande, A.; Amburi, J.K.; Sabarinathan, R.; Senthilkumar, R.; Sekar, K.
Source: Self-asserted source
Radhakrishnan Sabarinathan via Scopus - Elsevier

Peer review (7 reviews for 6 publications/grants)

Review activity for Cell reports. (1)
Review activity for F1000Research. (1)
Review activity for Genome biology. (1)
Review activity for Journal of the National Cancer Center. (2)
Review activity for Nature genetics. (1)
Review activity for npj systems biology and applications. (1)