Personal information

Activities

Employment (5)

University of Missouri Columbia: Columbia, MO, US

2017-01-20 to present | Assistant Professor (Department of Health Management and Informatics (HMI))
Employment
Source: Self-asserted source
Trupti Joshi

University of Missouri Columbia: Columbia, MO, US

2015-05-01 to present | Director of Translational Bioinformatics (School of Medicine - Office of Medical Research)
Employment
Source: Self-asserted source
Trupti Joshi

University of Missouri Columbia: Columbia, MO, US

2014-05-01 to present | Core Faculty (MU Informatics Institute (MUII))
Employment
Source: Self-asserted source
Trupti Joshi

University of Missouri Columbia: Columbia, MO, US

2015-05-01 to 2017-01-19 | Assistant Research Professor (Department of Molecular Microbiology and Immunology (MMI))
Employment
Source: Self-asserted source
Trupti Joshi

University of Missouri Columbia: Columbia, MO, US

2013-09-01 to 2015-04-30 | Assistant Research Professor (Department of Computer Science)
Employment
Source: Self-asserted source
Trupti Joshi

Education and qualifications (4)

University of Missouri Columbia: Columbia, MO, US

2013-05-15 | PhD Bioinformatics (MU Informatics Institute)
Education
Source: Self-asserted source
Trupti Joshi

University of Tennessee: Knoxville, TN, US

2001-08-01 to 2003-07-31 | MS Bioinformatics (School of Genome Science & Technology)
Education
Source: Self-asserted source
Trupti Joshi

University of Pune: Pune, Maharashtra, IN

2000-07-01 to 2001-08-01 | Advanced Diploma in Bioinformatics (Bioinformatics Center)
Education
Source: Self-asserted source
Trupti Joshi

University of Pune: Pune, Maharashtra, IN

1994-06-01 to 2000-01-15 | Bachelor of Medicine, Bachelor of Surgery (B. J. Medical College)
Education
Source: Self-asserted source
Trupti Joshi

Funding (2)

RESEARCH-PGR: Genomic and Synthetic Approaches Linking Auxin Signaling to Functional Domains in Maize

2016-09-15 to 2021-08-31 | Grant
National Science Foundation - Directorate for Biological Sciences (n/a, US)
GRANT_NUMBER: 1546873
Source: Self-asserted source
Trupti Joshi via DimensionsWizard

Physiological Genomics of Maize Nodal Root Growth under Drought

2016-03-15 to 2020-02-29 | Grant
National Science Foundation - Directorate for Biological Sciences (n/a, US)
GRANT_NUMBER: 1444448
Source: Self-asserted source
Trupti Joshi via DimensionsWizard

Works (50 of 69)

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Soybean genomics research community strategic plan: A vision for 2024–2028

The Plant Genome
2024-12 | Journal article
Contributors: Robert M. Stupar; Anna M. Locke; Doug K. Allen; Minviluz G. Stacey; Jianxin Ma; Jackie Weiss; Rex T. Nelson; Matthew E. Hudson; Trupti Joshi; Zenglu Li et al.
Source: check_circle
Crossref

Small and Long Non-Coding RNA Analysis for Human Trophoblast-Derived Extracellular Vesicles and Their Effect on the Transcriptome Profile of Human Neural Progenitor Cells

Cells
2024-11-11 | Journal article
Contributors: Jessica A. Kinkade; Pallav Singh; Mohit Verma; Teka Khan; Toshihiko Ezashi; Nathan J. Bivens; R. Michael Roberts; Trupti Joshi; Cheryl S. Rosenfeld
Source: check_circle
Crossref
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Employing Multi-Omics Analyses to Understand Changes during Kidney Development in Perinatal Interleukin-6 Animal Model

Cells
2024-10-09 | Journal article
Contributors: Ganesh Panzade; Tarak Srivastava; Daniel P. Heruth; Mohammad H. Rezaiekhaligh; Jianping Zhou; Zhen Lyu; Mukut Sharma; Trupti Joshi
Source: check_circle
Crossref
grade
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CrossMP: Enabling Cross-Modality Translation between Single-Cell RNA-Seq and Single-Cell ATAC-Seq through Web-Based Portal

Genes
2024-07-05 | Journal article
Contributors: Zhen Lyu; Sabin Dahal; Shuai Zeng; Juexin Wang; Dong Xu; Trupti Joshi
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Anti-EGFR aptamer exhibits direct anti-cancer effects in NSCLC cells harboring EGFR L858R mutations

2024-04-02 | Preprint
Contributors: Brian J. Thomas; Sania Z. Awan; Trupti Joshi; Mark A. Daniels; David Porciani; Donald H. Burke
Source: check_circle
Crossref

The effects of multifactorial stress combination on rice and maize

Plant Physiology
2024-02-29 | Journal article
Contributors: Ranjita Sinha; María Ángeles Peláez-Vico; Benjamin Shostak; Thao Thi Nguyen; Lidia S Pascual; Andrew M Ogden; Zhen Lyu; Sara I Zandalinas; Trupti Joshi; Felix B Fritschi et al.
Source: check_circle
Crossref

A novel role of TGFBI in macrophage polarization and macrophage-induced pancreatic cancer growth and therapeutic resistance

Cancer Letters
2023-12 | Journal article
Contributors: Jing Zhou; Nan Lyu; Qiongling Wang; Ming Yang; Eric T. Kimchi; Kun Cheng; Trupti Joshi; Adama R. Tukuli; Kevin F. Staveley-O’Carroll; Guangfu Li
Source: check_circle
Crossref

Rapid systemic responses of Arabidopsis to waterlogging stress

Plant Physiology
2023-10-26 | Journal article
Contributors: María Ángeles Peláez-Vico; Adama Tukuli; Pallav Singh; David G Mendoza-Cózatl; Trupti Joshi; Ron Mittler
Source: check_circle
Crossref

Knowledge-Engineered Multi-Cloud Resource Brokering for Application Workflow Optimization

IEEE Transactions on Network and Service Management
2023-09 | Journal article
Contributors: Ashish Pandey; Prasad Calyam; Zhen Lyu; Songjie Wang; Dmitrii Chemodanov; Trupti Joshi
Source: check_circle
Crossref

Differential transpiration between pods and leaves during stress combination in soybean

Plant Physiology
2023-05-31 | Journal article
Contributors: Ranjita Sinha; Benjamin Shostak; Sai Preethi Induri; Sidharth Sen; Sara I Zandalinas; Trupti Joshi; Felix B Fritschi; Ron Mittler
Source: check_circle
Crossref

The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis

BMC Genomics
2023-03-10 | Journal article
Contributors: Yen On Chan; Nicholas Dietz; Shuai Zeng; Juexin Wang; Sherry Flint-Garcia; M. Nancy Salazar-Vidal; Mária Škrabišová; Kristin Bilyeu; Trupti Joshi
Source: check_circle
Crossref

AccuCalc: A Python Package for Accuracy Calculation in GWAS

Genes
2023-01-01 | Journal article
Contributors: Jana Biová; Nicholas Dietz; Yen On Chan; Trupti Joshi; Kristin Bilyeu; Mária Škrabišová
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Differential regulation of flower transpiration during abiotic stress in annual plants

New Phytologist
2022-07 | Journal article
Contributors: Ranjita Sinha; Sara I. Zandalinas; Yosef Fichman; Sidharth Sen; Shuai Zeng; Aurelio Gómez‐Cadenas; Trupti Joshi; Felix B. Fritschi; Ron Mittler
Source: check_circle
Crossref

Bioinformatics for plant and agricultural discoveries in the age of multiomics: A review and case study of maize nodal root growth under water deficit

Physiologia Plantarum
2022-03 | Journal article
Contributors: Juexin Wang; Sen Sidharth; Shuai Zeng; Yuexu Jiang; Yen On Chan; Zhen Lyu; Tyler McCubbin; Rachel Mertz; Robert E. Sharp; Trupti Joshi
Source: check_circle
Crossref

G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers

Nucleic Acids Research
2021-07-02 | Journal article
Contributors: Shuai Zeng; Ziting Mao; Yijie Ren; Duolin Wang; Dong Xu; Trupti Joshi
Source: check_circle
Crossref

Correction: Stuckel, et al.; Enhanced CXCR4 Expression Associates with Increased Gene Body 5-Hydroxymethylcytosine Modification but Not Decreased Promoter Methylation in Colorectal Cancer. Cancers 2020, 12, 539

Cancers
2020-10-23 | Journal article
Contributors: Alexei J. Stuckel; Wei Zhang; Xu Zhang; Shuai Zeng; Urszula Dougherty; Reba Mustafi; Qiong Zhang; Elsa Perreand; Tripti Khare; Trupti Joshi et al.
Source: check_circle
Crossref

The NS1 protein of the parvovirus MVM Aids in the localization of the viral genome to cellular sites of DNA damage

PLOS Pathogens
2020-10-16 | Journal article
Contributors: Kinjal Majumder; Patrick Hearing; Maria Boftsi; Fawn B. Whittle; Juexin Wang; Matthew S. Fuller; Trupti Joshi; David J. Pintel
Source: check_circle
Crossref

The Evolution of Soybean Knowledge Base (SoyKB).

Methods in molecular biology (Clifton, N.J.)
2017 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Plant-derived phosphocholine facilitates cellular uptake of anti-pulmonary fibrotic HJT-sRNA-m7.

Science China. Life sciences
2017-03 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions.

BMC genomics
2016 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles.

Frontiers in plant science
2016 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

PGen: large-scale genomic variations analysis workflow and browser in SoyKB.

BMC bioinformatics
2016-10 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Landscape of genomic diversity and trait discovery in soybean.

Scientific Reports
2016-03 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing.

BMC genomics
2016-02 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection.

Plant biotechnology journal
2016-01 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean.

BMC genomics
2015 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Identification of quantitative trait loci underlying resistance to southern root-knot and reniform nematodes in soybean accession PI 567516C.

Molecular breeding : new strategies in plant improvement
2015 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis.

BMC genomics
2015 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.

BMC genomics
2015 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

System approaches to study root hairs as a single cell plant model: current status and future perspectives.

Frontiers in plant science
2015 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Whole-genome gene expression profiling revealed genes and pathways potentially involved in regulating interactions of soybean with cyst nematode (Heterodera glycines Ichinohe).

BMC genomics
2015 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Core clock, SUB1, and ABAR genes mediate flooding and drought responses via alternative splicing in soybean.

Journal of experimental botany
2015-12 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies.

BMC genomics
2015-11 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Comparative analysis of the drought-responsive transcriptome in soybean lines contrasting for canopy wilting.

Plant science : an international journal of experimental plant biology
2015-11 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Effect of lipo-chitooligosaccharide on early growth of C4 grass seedlings.

Journal of experimental botany
2015-09 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response.

Molecular genetics and genomics : MGG
2015-06 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

An association analysis between psychophysical characteristics and genome-wide gene expression changes in human adaptation to the extreme climate at the Antarctic Dome Argus.

Molecular psychiatry
2015-04 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Identification and evaluation of quantitative trait loci underlying resistance to multiple HG types of soybean cyst nematode in soybean PI 437655.

TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik
2015-01 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Major soybean maturity gene haplotypes revealed by SNPViz analysis of 72 sequenced soybean genomes.

PloS one
2014 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores.

Frontiers in plant science
2014 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding.

Nucleic acids research
2014-01 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Genomic differences between cultivated soybean, G. max and its wild relative G. soja.

BMC genomics
2013 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.

Genome research
2013-10 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Elongation factor 1 alpha1 and genes associated with Usher syndromes are downstream targets of GBX2.

PloS one
2012 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics.

BMC genomics
2012 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells.

BMC genomics
2012-08 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Prediction of drought-resistant genes in Arabidopsis thaliana using SVM-RFE.

PloS one
2011 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing.

Nucleic acids research
2011-10 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

Prediction of novel miRNAs and associated target genes in Glycine max.

BMC bioinformatics
2010 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central

SNP discovery by high-throughput sequencing in soybean.

BMC genomics
2010 | Journal article
Source: Self-asserted source
Trupti Joshi via Europe PubMed Central
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