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Employment (2)

Sun Yat-Sen University: Guangzhou, Guangdong, CN

2015-01 to present | Professor (School of Life Sciences)
Employment
Source: Self-asserted source
Rui Zhang

Stanford University: Stanford, CA, US

2011-09 to 2015-01 | Postdoctoral Fellow (Genetics)
Employment
Source: Self-asserted source
Rui Zhang

Education and qualifications (2)

Kunming Institute of Zoology Chinese Academy of Sciences: Kunming, Yunnan, CN

2004-09-01 to 2009-06-20 | Ph.D.
Education
Source: Self-asserted source
Rui Zhang

Sichuan University: Chengdu, Sichuan, CN

1999-09-01 to 2003-06-31 | B.S. (Biology)
Education
Source: Self-asserted source
Rui Zhang

Works (37)

Epitranscriptomic subtyping, visualization, and denoising by global motif visualization

Nature Communications
2023-09-23 | Journal article
Contributors: Jianheng Liu; Tao Huang; Jing Yao; Tianxuan Zhao; Yusen Zhang; Rui Zhang
Source: check_circle
Crossref

Temporal landscape and translational regulation of A-to-I editing in mouse retina development

2023-03-08 | Preprint
Contributors: Ludong Yang; Liang Yi; Jiaqi Yang; Rui Zhang; Zhi Xie; Hongwei Wang
Source: check_circle
Crossref

Developmental mRNA m5C landscape and regulatory innovations of massive m5C modification of maternal mRNAs in animals

Nature Communications
2022-12 | Journal article
Part of ISSN: 2041-1723
Source: Self-asserted source
Rui Zhang

Virus-specific editing identification approach reveals the landscape of A-to-I editing and its impacts on SARS-CoV-2 characteristics and evolution

Nucleic Acids Research
2022-03-21 | Journal article
Contributors: Yulong Song; Xiuju He; Wenbing Yang; Yaoxing Wu; Jun Cui; Tian Tang; Rui Zhang
Source: check_circle
Crossref

Sequence- and structure-selective mRNA m5C methylation by NSUN6 in animals

National Science Review
2021-06-12 | Journal article
Contributors: Jianheng Liu; Tao Huang; Yusen Zhang; Tianxuan Zhao; Xueni Zhao; Wanying Chen; Rui Zhang
Source: check_circle
Crossref

Human A-to-I RNA editing SNP loci are enriched in GWAS signals for autoimmune diseases and under balancing selection

Genome Biology
2020-12 | Journal article
Contributors: Hui Zhang; Qiang Fu; Xinrui Shi; Ziqing Pan; Wenbing Yang; Zichao Huang; Tian Tang; Xionglei He; Rui Zhang
Source: check_circle
Crossref

Dynamic landscape and evolution of m6A methylation in human

Nucleic Acids Research
2020-06-19 | Journal article
Contributors: Hui Zhang; Xinrui Shi; Tao Huang; Xueni Zhao; Wanying Chen; Nannan Gu; Rui Zhang
Source: check_circle
Crossref

Sense–antisense miRNA pairs constitute an elaborate reciprocal regulatory circuit

Genome Research
2020-05-18 | Journal article
Contributors: Yulong Song; Lishi Li; Wenbing Yang; Qiang Fu; Wanying Chen; Zeng Fang; Wen Li; Nannan Gu; Rui Zhang
Source: check_circle
Crossref

irCLASH reveals RNA substrates recognized by human ADARs

Nature Structural & Molecular Biology
2020-04-23 | Journal article
Contributors: Yulong Song; Wenbing Yang; Qiang Fu; Liang Wu; Xueni Zhao; Yusen Zhang; Rui Zhang
Source: check_circle
Crossref

Genome-wide identification of mRNA 5-methylcytosine in mammals.

Nature structural & molecular biology
2019-05-06 | Journal article
Source: Self-asserted source
Rui Zhang
grade
Preferred source (of 2)‎

The landscape of miRNA editing in animals and its impact on miRNA biogenesis and targeting.

Genome research
2018-01 | Journal article
Contributors: Li L; Song Y; Shi X; Liu J; Xiong S; Chen W; Fu Q; Huang Z; Gu N; Zhang R
Source: Self-asserted source
Rui Zhang via Europe PubMed Central
grade
Preferred source (of 2)‎

Dynamic landscape and regulation of RNA editing in mammals.

Nature
2017-10 | Journal article
Contributors: Tan MH; Li Q; Shanmugam R; Piskol R; Kohler J; Young AN; Liu KI; Zhang R; Ramaswami G; Ariyoshi K et al.
Source: Self-asserted source
Rui Zhang via Europe PubMed Central

Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease.

Nature genetics
2017-10 | Journal article
Contributors: eGTEx Project
Source: Self-asserted source
Rui Zhang via Europe PubMed Central

Evolutionary analysis reveals regulatory and functional landscape of coding and non-coding RNA editing.

PLoS genetics
2017-02 | Journal article
Source: Self-asserted source
Rui Zhang
grade
Preferred source (of 2)‎

The Genomic Landscape and Clinical Relevance of A-to-I RNA Editing in Human Cancers.

Cancer cell
2015-10 | Journal article
Source: Self-asserted source
Rui Zhang
grade
Preferred source (of 2)‎

Functional Conservation of Both CDS- and 3′-UTR-Located MicroRNA Binding Sites between Species

Molecular Biology and Evolution
2015-09 | Journal article
Contributors: Liu Guojing; Rui Zhang; Jin Xu; Chung-I Wu; Xuemei Lu
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

Genetic mapping uncovers cis-regulatory landscape of RNA editing

Nature Communications
2015-09 | Journal article
Contributors: Gokul Ramaswami; Patricia Deng; Rui Zhang; Mary Anna Carbone; Trudy F. C. Mackay; Jin Billy Li
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

The landscape of genomic imprinting across diverse adult human tissues.

Genome research
2015-07 | Journal article
Source: Self-asserted source
Rui Zhang
grade
Preferred source (of 2)‎

Cis Regulatory Effects on A-to-I RNA Editing in Related Drosophila Species

Cell Reports
2015-05 | Journal article
Contributors: Anne L. Sapiro; Patricia Deng; Rui Zhang; Jin Billy Li
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse.

Nature genetics
2015-05 | Journal article
Source: Self-asserted source
Rui Zhang
grade
Preferred source (of 2)‎

Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome.

Science
2015-05 | Journal article
Source: Self-asserted source
Rui Zhang
grade
Preferred source (of 2)‎

The role of Abcb5 alleles in susceptibility to haloperidol-induced toxicity in mice and humans.

PLoS medicine
2015-02 | Journal article
Source: Self-asserted source
Rui Zhang
grade
Preferred source (of 2)‎

Functional Conservation of Both CDS- and 3′-UTR-Located MicroRNA Binding Sites between Species

Molecular Biology and Evolution
2014-11 | Journal article
Contributors: Guojing Liu; Rui Zhang; Jin Xu; Chung-I Wu; Xuemei Lu
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

Allelic expression of deleterious protein-coding variants across human tissues.

PLoS genetics
2014-05 | Journal article
Source: Self-asserted source
Rui Zhang
grade
Preferred source (of 2)‎

A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes.

Genome research
2014-03 | Journal article
Source: Self-asserted source
Rui Zhang
grade
Preferred source (of 2)‎

Functional divergence of the rapidly evolving miR-513 subfamily in primates

BMC Evolutionary Biology
2013 | Journal article
Contributors: Zhenghua Sun; Yanfeng Zhang; Rui Zhang; Xuebin Qi; Bing Su
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

Quantifying RNA allelic ratios by microfluidic multiplex PCR and sequencing

Nature Methods
2013-11 | Journal article
Contributors: Rui Zhang; Xin Li; Gokul Ramaswami; Kevin S Smith; Gustavo Turecki; Stephen B Montgomery; Jin Billy Li
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

The evolution of evolvability in microRNA target sites in vertebrates.

Genome research
2013-11 | Journal article
Source: Self-asserted source
Rui Zhang
grade
Preferred source (of 2)‎

Identifying RNA editing sites using RNA sequencing data alone

Nature Methods
2013-01-06 | Journal article
Contributors: Gokul Ramaswami; Rui Zhang; Robert Piskol; Liam P Keegan; Patricia Deng; Mary A O'Connell; Jin Billy Li
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

Genome sequence and global sequence variation map with 5.5 million SNPs in Chinese rhesus macaque

Genome Biology
2011 | Journal article
Contributors: Xiaodong Fang; Yanfeng Zhang; Rui Zhang; Lixin Yang; Ming Li; Kaixiong Ye; Xiaosen Guo; Jun Wang; Bing Su
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs.

PNAS
2011-09 | Journal article
Source: Self-asserted source
Rui Zhang
grade
Preferred source (of 2)‎

Diversity and evolution of MicroRNA gene clusters

Science in China Series C: Life Sciences
2009-03 | Journal article
Contributors: YanFeng Zhang; Rui Zhang; Bing Su
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

Small but influential: the role of microRNAs on gene regulatory network and 3′UTR evolution

Journal of Genetics and Genomics
2009-01 | Journal article
Contributors: Rui Zhang; Bing Su
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

MicroRNA regulation and the variability of human cortical gene expression

Nucleic Acids Research
2008-06 | Journal article
Contributors: R. Zhang; B. Su
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

Molecular Evolution of a Primate-Specific microRNA Family

Molecular Biology and Evolution
2008-04-03 | Journal article
Contributors: R. Zhang; Y.-Q. Wang; B. Su
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

MicroRNA Evolution in the Human Genome

Encyclopedia of Life Sciences
2008-03 | Other
Contributors: Bing Su; Rui Zhang
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

Rapid evolution of an X-linked microRNA cluster in primates

Genome Research
2007-03 | Journal article
Contributors: R. Zhang; Y. Peng; W. Wang; B. Su
Source: Self-asserted source
Rui Zhang via Crossref Metadata Search

Peer review (14 reviews for 9 publications/grants)

Review activity for Communications biology. (1)
Review activity for Genome biology. (1)
Review activity for Genomics, Proteomics & Bioinformatics. (1)
Review activity for Nature biotechnology. (1)
Review activity for Nature chemical biology. (1)
Review activity for Nature communications (6)
Review activity for Nature reviews. (1)
Review activity for PLOS genetics. (1)
Review activity for Signal transduction and targeted therapy. (1)