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bioinformatics, microbial ecology, metagenomics, human microbiome
United States

Biography

Computer scientist, microbial ecologist.

Activities

Employment (3)

Helmholtz Institute for Functional Marine Biodiversity: Oldenburg, DE

2022-02-15 to present | Professor (Ecosystem Data Science)
Employment
Source: Self-asserted source
A. Murat Eren

The University of Chicago: Chicago, IL, US

2015-10-05 to 2022-02-14 | Assistant Professor (Department of Medicine)
Employment
Source: Self-asserted source
A. Murat Eren

Marine Biological Laboratory: Woods Hole, MA, US

2013-09-01 to 2015-10-05 | Assistant Research Scientist (The Josephine Bay Paul Center for Comparative Molecular Biology and Evolution)
Employment
Source: Self-asserted source
A. Murat Eren

Works (50 of 89)

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Page 1 of 2

Adaptive adjustment of profile HMM significance thresholds improves functional and metabolic insights into microbial genomes

2025-03-19 | Other
Contributors: Kathryn Kananen; Iva Veseli; Christian J. Quiles Pérez; Samuel Miller; A. Murat Eren; Patrick Bradley
Source: check_circle
Crossref

Ribosomal protein phylogeography offers quantitative insights into the efficacy of genome-resolved surveys of microbial communities

2025-01-15 | Preprint
Contributors: Matthew S. Schechter; Florian Trigodet; Iva A. Veseli; Samuel E. Miller; Matthew L. Klein; Metehan Sever; Loïs Maignien; Tom O. Delmont; Samuel H. Light; A. Murat Eren
Source: check_circle
Crossref

Habitat-specificity in SAR11 is associated with a handful of genes under high selection

2024-12-24 | Preprint
Contributors: Sarah J. Tucker; Kelle C. Freel; A. Murat Eren; Michael S. Rappé
Source: check_circle
Crossref

Modern microbiology: Embracing complexity through integration across scales

Cell
2024-09 | Journal article
Contributors: A. Murat Eren; Jillian F. Banfield
Source: check_circle
Crossref

Metatranscriptomic response of deep ocean microbial populations to infusions of oil and/or synthetic chemical dispersant

Applied and Environmental Microbiology
2024-08-21 | Journal article
Contributors: Tito D. Peña-Montenegro; Sara Kleindienst; Andrew E. Allen; A. Murat Eren; John P. McCrow; Jonathan Arnold; Samantha B. Joye; Jennifer F. Biddle
Source: check_circle
Crossref

Adaptive adjustment of significance thresholds produces large gains in microbial gene annotations and metabolic insights

2024-07-05 | Preprint
Contributors: Kathryn Kananen; Iva A Veseli; Christian J. Quiles Perez; Samuel E. Miller; A. Murat Eren; Patrick H Bradley
Source: check_circle
Crossref

Wolbachia populations across organs of individual Culex pipiens: highly conserved intra-individual core pangenome with inter-individual polymorphisms

2024-06-10 | Other
Contributors: Julie Reveillaud; Blandine Trouche; Hans Schrieke; Olivier Duron; A.Murat Eren
Source: check_circle
Crossref

Rich microbial and depolymerising diversity in Antarctic krill gut

Microbiology Spectrum
2024-04-02 | Journal article
Contributors: Lars Möller; Yevhen Vainshtein; Bettina Meyer; John Neidhardt; A. Murat Eren; Kai Sohn; Ralf Rabus; Konstantinos Aristomenis Kormas
Source: check_circle
Crossref

Egoviruses: distant relatives of poxviruses abundant in the gut microbiomes of humans and animals worldwide

2024-03-23 | Preprint
Contributors: Morgan Gaïa; Hans-Joachim Ruscheweyh; A. Murat Eren; Eugene V. Koonin; Shinichi Sunagawa; Mart Krupovic; Tom O. Delmont
Source: check_circle
Crossref

Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess

Nature Microbiology
2024-03-04 | Journal article
Contributors: Michael K. Yu; Emily C. Fogarty; A. Murat Eren
Source: check_circle
Crossref

Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples

Nature Methods
2023-11 | Journal article
Contributors: Natalie J. Wu-Woods; Jacob T. Barlow; Florian Trigodet; Dustin G. Shaw; Anna E. Romano; Bana Jabri; A. Murat Eren; Rustem F. Ismagilov
Source: check_circle
Crossref

Two-million-year-old microbial communities from the Kap København Formation in North Greenland

2023-06-10 | Preprint
Contributors: Antonio Fernandez-Guerra; Lars Wörmer; Guillaume Borrel; Tom O Delmont; Bo Elberling; Marcus Elvert; A. Murat Eren; Simonetta Gribaldo; Rasmus Amund Henriksen; Kai-Uwe Hinrichs et al.
Source: check_circle
Crossref

Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution

Science Advances
2023-02-24 | Journal article
Contributors: Evan Kiefl; Ozcan C. Esen; Samuel E. Miller; Kourtney L. Kroll; Amy D. Willis; Michael S. Rappé; Tao Pan; A. Murat Eren
Source: check_circle
Crossref

The Diversity and Functional Capacity of Microbes Associated with Coastal Macrophytes

mSystems
2022-10-26 | Journal article
Contributors: Khashiff Miranda; Brooke L. Weigel; Emily C. Fogarty; Iva A. Veseli; Anne E. Giblin; A. Murat Eren; Catherine A. Pfister; Christopher R. Anderton
Source: check_circle
Crossref

pWCP is a widely distributed and highly conserved Wolbachia plasmid in Culex mosquitoes worldwide

2022-09-14 | Preprint
Contributors: Amani Ghousein; Jordan Tutagata; Manuel Etienne; Victor Chaumeau; Sebastien Boyer; Nonito Pages; David Roiz; A. Murat Eren; Guillaume Cambray; Julie Reveillaud
Source: check_circle
Crossref

Guts of the Urban Ecosystem: Microbial Ecology of Sewer Infrastructure

mSystems
2022-08-30 | Journal article
Contributors: Adélaïde Roguet; Ryan J. Newton; A. Murat Eren; Sandra L. McLellan; Sarah M. Allard
Source: check_circle
Crossref

High molecular weight DNA extraction strategies for long‐read sequencing of complex metagenomes

Molecular Ecology Resources
2022-07 | Journal article
Contributors: Florian Trigodet; Karen Lolans; Emily Fogarty; Alon Shaiber; Hilary G. Morrison; Luis Barreiro; Bana Jabri; A. Murat Eren
Source: check_circle
Crossref

Microbial Diversity and Interaction Specificity in Kombucha Tea Fermentations

mSystems
2022-06-28 | Journal article
Contributors: Elizabeth A. Landis; Emily Fogarty; John C. Edwards; Otilia Popa; A. Murat Eren; Benjamin E. Wolfe; Matthew F. Traxler
Source: check_circle
Crossref

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Cell Genomics
2022-05 | Journal article
Contributors: Tom O. Delmont; Morgan Gaia; Damien D. Hinsinger; Paul Frémont; Chiara Vanni; Antonio Fernandez-Guerra; A. Murat Eren; Artem Kourlaiev; Leo d'Agata; Quentin Clayssen et al.
Source: check_circle
Crossref

tRNA modification dynamics from individual organisms to metaepitranscriptomics of microbiomes

Molecular Cell
2022-03 | Journal article
Contributors: Wen Zhang; Marcus Foo; A. Murat Eren; Tao Pan
Source: check_circle
Crossref

Unifying the known and unknown microbial coding sequence space

eLife
2022-03-31 | Journal article
Contributors: Chiara Vanni; Matthew S Schechter; Silvia G Acinas; Albert Barberán; Pier Luigi Buttigieg; Emilio O Casamayor; Tom O Delmont; Carlos M Duarte; A Murat Eren; Robert D Finn et al.
Source: check_circle
Crossref

Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution

2022-03-02 | Preprint
Contributors: Evan Kiefl; Ozcan C. Esen; Samuel E. Miller; Kourtney L. Kroll; Amy D. Willis; Michael S. Rappé; Tao Pan; A. Murat Eren
Source: check_circle
Crossref

proovframe: frameshift-correction for long-read (meta)genomics

2021-08-24 | Other
Contributors: Thomas Hackl; Florian Trigodet; A. Murat Eren; Steven J. Biller; John M. Eppley; Elaine Luo; Andrew Burger; Edward F. DeLong; Matthias G. Fischer
Source: check_circle
Crossref

AGNOSTOS-DB: a resource to unlock the uncharted regions of the coding sequence space

2021-06-07 | Other
Contributors: Chiara Vanni; Matthew S. Schechter; Tom O. Delmont; A. Murat Eren; Martin Steinegger; Frank Oliver Glöckner; Antonio Fernandez-Guerra
Source: check_circle
Crossref

High molecular weight DNA extraction strategies for long-read sequencing of complex metagenomes

2021-03-03 | Preprint
Contributors: Florian Trigodet; Karen Lolans; Emily Fogarty; Alon Shaiber; Hilary G. Morrison; Luis Barreiro; Bana Jabri; A. Murat Eren
Source: check_circle
Crossref

Community-led, integrated, reproducible multi-omics with anvi’o

Nature Microbiology
2020-12-21 | Journal article
Contributors: A. Murat Eren; Evan Kiefl; Alon Shaiber; Iva Veseli; Samuel E. Miller; Matthew S. Schechter; Isaac Fink; Jessica N. Pan; Mahmoud Yousef; Emily C. Fogarty et al.
Source: check_circle
Crossref

The genetic and ecological landscape of plasmids in the human gut

2020-11-01 | Preprint
Contributors: Michael K. Yu; Emily C. Fogarty; A. Murat Eren
Source: check_circle
Crossref

ColwelliaandMarinobactermetapangenomes reveal species-specific responses to oil and dispersant exposure in deepsea microbial communities

2020-09-28 | Preprint
Contributors: Tito David Peña-Montenegro; Sara Kleindienst; Andrew E. Allen; A. Murat Eren; John P. McCrow; Juan David Sánchez-Calderón; Jonathan Arnold; Samantha B. Joye
Source: check_circle
Crossref

Unifying the known and unknown microbial coding sequence space

2020-07-01 | Preprint
Contributors: Chiara Vanni; Matthew S. Schechter; Silvia G. Acinas; Albert Barberán; Pier Luigi Buttigieg; Emilio O. Casamayor; Tom O. Delmont; Carlos M. Duarte; A. Murat Eren; Robert D. Finn et al.
Source: check_circle
Crossref

Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes

eLife
2020-06-17 | Journal article
Contributors: William J Watterson; Melikhan Tanyeri; Andrea R Watson; Candace M Cham; Yue Shan; Eugene B Chang; A Murat Eren; Savaş Tay
Source: check_circle
Crossref

Metapangenomics of the oral microbiome provides insights into habitat adaptation and cultivar diversity

2020-05-02 | Preprint
Contributors: Daniel R. Utter; Gary G. Borisy; A. Murat Eren; Colleen M. Cavanaugh; Jessica L. Mark Welch
Source: check_circle
Crossref

FORENSIC: an Online Platform for Fecal Source Identification

mSystems
2020-04-28 | Journal article
Contributors: Adélaïde Roguet; Özcan C. Esen; A. Murat Eren; Ryan J. Newton; Sandra L. McLellan; Sarah M. Allard
Source: check_circle
Crossref

Accurate and complete genomes from metagenomes

Genome Research
2020-03-18 | Journal article
Contributors: Lin-Xing Chen; Karthik Anantharaman; Alon Shaiber; A. Murat Eren; Jillian F. Banfield
Source: check_circle
Crossref

Disinfection exhibits systematic impacts on the drinking water microbiome

2019-11-02 | Other
Contributors: Zihan Dai; Maria C. Sevillano-Rivera; Szymon T. Calus; Q. Melina Bautista-de los Santos; A. Murat Eren; Paul W.J.J. van der Wielen; Umer Z. Ijaz; Ameet J. Pinto
Source: check_circle
Crossref

Accurate and Complete Genomes from Metagenomes

2019-10-17 | Other
Contributors: Lin-Xing Chen; Karthik Anantharaman; Alon Shaiber; A. Murat Eren; Jillian F. Banfield
Source: check_circle
Crossref

Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade

eLife
2019-09-03 | Journal article
Contributors: Tom O Delmont; Evan Kiefl; Ozsel Kilinc; Ozcan C Esen; Ismail Uysal; Michael S Rappé; Steven Giovannoni; A Murat Eren
Source: check_circle
Crossref

B cell superantigens in the human intestinal microbiota

Science Translational Medicine
2019-08-28 | Journal article
Contributors: Jeffrey J. Bunker; Christoph Drees; Andrea R. Watson; Catherine H. Plunkett; Cathryn R. Nagler; Olaf Schneewind; A. Murat Eren; Albert Bendelac
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Crossref

Biochemical diversity of glycosphingolipid biosynthesis as a driver of Coccolithovirus competitive ecology

Environmental Microbiology
2019-06 | Journal article
Contributors: Jozef I. Nissimov; David Talmy; Liti Haramaty; Helen F. Fredricks; Ehud Zelzion; Ben Knowles; A. Murat Eren; Rebecca Vandzura; Christien P. Laber; Brittany M. Schieler et al.
Source: check_circle
Crossref

Composite Metagenome-Assembled Genomes Reduce the Quality of Public Genome Repositories

mBio
2019-06-25 | Journal article
Contributors: Alon Shaiber; A. Murat Eren; David A. Relman
Source: check_circle
Crossref

Disinfectant residuals in drinking water systems select for mycobacterial populations with intrinsic antimicrobial resistance

2019-06-20 | Other
Contributors: Maria Sevillano; Zihan Dai; Szymon Calus; Quyen M Bautista-de los Santos; A. Murat Eren; Paul W.J.J. van der Wielen; Umer Z. Ijaz; Ameet J. Pinto
Source: check_circle
Crossref

Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota

Nature Microbiology
2019-03-04 | Journal article
Contributors: Luke J. McKay; Mensur Dlakić; Matthew W. Fields; Tom O. Delmont; A. Murat Eren; Zackary J. Jay; Korinne B. Klingelsmith; Douglas B. Rusch; William P. Inskeep
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Crossref

Transcriptome-wide reprogramming of N6-methyladenosine modification by the mouse microbiome

Cell Research
2019-02-17 | Journal article
Contributors: Xiaoyun Wang; Yan Li; Wenjun Chen; Hailing Shi; A. Murat Eren; Aleksey Morozov; Chuan He; Guan-Zheng Luo; Tao Pan
Source: check_circle
Crossref

Minimizing confounders and increasing data quality in murine models for studies of the gut microbiome.

PeerJ
2018-07 | Journal article
Contributors: Miyoshi J; Leone V; Nobutani K; Musch MW; Martinez-Guryn K; Wang Y; Miyoshi S; Bobe AM; Eren AM; Chang EB
Source: Self-asserted source
A. Murat Eren via Europe PubMed Central

New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes.

Frontiers in Microbiology
2018-07 | Journal article
Contributors: Kroeger ME; Delmont TO; Eren AM; Meyer KM; Guo J; Khan K; Rodrigues JLM; Bohannan BJM; Tringe SG; Borges CD et al.
Source: Self-asserted source
A. Murat Eren via Europe PubMed Central

Author Correction: Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes

Nature Microbiology
2018-07-24 | Journal article
Contributors: Tom O. Delmont; Christopher Quince; Alon Shaiber; Özcan C. Esen; Sonny TM Lee; Michael S. Rappé; Sandra L. McLellan; Sebastian Lücker; A. Murat Eren
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Crossref

Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes.

Nature microbiology
2018-06 | Journal article
Contributors: Delmont TO; Quince C; Shaiber A; Esen ÖC; Lee ST; Rappé MS; McLellan SL; Lücker S; Eren AM
Source: Self-asserted source
A. Murat Eren via Europe PubMed Central
grade
Preferred source (of 2)‎

Gut microbes contribute to variation in solid organ transplant outcomes in mice.

Microbiome
2018-05 | Journal article
Contributors: McIntosh CM; Chen L; Shaiber A; Eren AM; Alegre ML
Source: Self-asserted source
A. Murat Eren via Europe PubMed Central

Microbial signals drive pre-leukaemic myeloproliferation in a Tet2-deficient host.

Nature
2018-05 | Journal article
Contributors: Meisel M; Hinterleitner R; Pacis A; Chen L; Earley ZM; Mayassi T; Pierre JF; Pierre JF; Ernest JD; Galipeau HJ et al.
Source: Self-asserted source
A. Murat Eren via Europe PubMed Central

Vaginal microbiome in early pregnancy and subsequent risk of spontaneous preterm birth: a case-control study.

BJOG : an international journal of obstetrics and gynaecology
2018-05 | Journal article
Contributors: Tabatabaei N; Eren AM; Barreiro LB; Yotova V; Dumaine A; Allard C; Fraser WD
Source: Self-asserted source
A. Murat Eren via Europe PubMed Central

Linking pangenomes and metagenomes: the Prochlorococcus metapangenome.

PeerJ
2018-01 | Journal article
Contributors: Delmont TO; Eren AM
Source: Self-asserted source
A. Murat Eren via Europe PubMed Central
Items per page:
Page 1 of 2

Peer review (2 reviews for 2 publications/grants)

Review activity for Cell. (1)
Review activity for F1000Research. (1)