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Employment (3)

University Medical Center Freiburg: Freiburg, DE

2019-04-01 to present (Institute for Infection Prevention and Control)
Employment
Source: Self-asserted source
Tjibbe Donker

University of Oxford: Oxford, GB

2015-02-01 to 2019-03-01 | Post-Doc researcher (Modernising Medical Microbiology, Nuffield Department of Medicine)
Employment
Source: Self-asserted source
Tjibbe Donker

University Medical Center Groningen: Groningen, Groningen, NL

2012-04-01 to 2015-01-01 | Post-Doc researcher (Medical Microbiology)
Employment
Source: Self-asserted source
Tjibbe Donker

Works (43)

Changes in isolation guidelines for CPE patients results in only a mild reduction in required hospital beds

2024-07-05 | Preprint
Contributors: Michael J Lydeamore; David Wu; Tjibbe Donker; Claire Gorrie; Charlie K Higgs; Marion Easton; Daneeta Hennessy; Nicholas Geard; Benjamin P Howden; Ben S Cooper et al.
Source: check_circle
Crossref

Estimation of SARS-CoV-2 fitness gains from genomic surveillance data without prior lineage classification

Proceedings of the National Academy of Sciences
2024-06-18 | Journal article
Contributors: Tjibbe Donker; Alexis Papathanassopoulos; Hiren Ghosh; Raisa Kociurzynski; Marius Felder; Hajo Grundmann; Sandra Reuter
Source: check_circle
Crossref

Carbapenemase-producing Enterobacterales colonisation status does not lead to more frequent admissions: a linked patient study

2024-01 | Preprint
Contributors: Lydeamore MJ; Donker T; Wu D; Gorrie C; Turner A; Easton M; Hennessey D; Geard N; Howden BP; Cooper BS et al.
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central
grade
Preferred source (of 2)‎

Estimation of SARS-CoV-2 fitness gains from genomic surveillance data without prior lineage classification

2024-01 | Preprint
Contributors: Donker T; Papathanassopoulos A; Ghosh H; Kociurzynski R; Felder M; Grundmann H; Reuter S
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central
grade
Preferred source (of 2)‎

Forecasting local hospital bed demand for COVID-19 using on-request simulations.

Scientific reports
2023-12 | Journal article
Contributors: Kociurzynski R; D'Ambrosio A; Papathanassopoulos A; Bürkin F; Hertweck S; Eichel VM; Heininger A; Liese J; Mutters NT; Peter S et al.
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central
grade
Preferred source (of 3)‎

Model-based evaluation of admission screening strategies for the detection and control of carbapenemase-producing Enterobacterales in the English hospital setting.

BMC medicine
2023-12 | Journal article
Contributors: Pople D; Kypraios T; Donker T; Stoesser N; Seale AC; George R; Dodgson A; Freeman R; Hope R; Walker AS et al.
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central

A coupled experimental and statistical approach for an assessment of SARS-CoV-2 infection risk at indoor event locations.

BMC public health
2023-07 | Journal article
Contributors: Siebler L; Rathje T; Calandri M; Stergiaropoulos K; Donker T; Richter B; Spahn C; Nusseck M
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central
grade
Preferred source (of 2)‎

An appeal for strengthening genomic pathogen surveillance to improve pandemic preparedness and infection prevention: the German perspective.

Infection
2023-05 | Journal article
Contributors: Salzberger B; Mellmann A; Bludau A; Ciesek S; Corman V; Dilthey A; Donker T; Eckmanns T; Egelkamp R; Gatermann SG et al.
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central

The dangers of using large language models for peer review.

The Lancet. Infectious diseases
2023-05 | Journal article
Contributors: Donker T
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central

[Establishment of genomic pathogen surveillance to strengthen pandemic preparedness and infection prevention in Germany].

Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz
2023-04 | Journal article
Contributors: Scheithauer S; Dilthey A; Bludau A; Ciesek S; Corman V; Donker T; Eckmanns T; Egelkamp R; Grundmann H; Häcker G et al.
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central

Impact of antibiotic use on patient-level risk of death in 36 million hospital admissions in England.

The Journal of infection
2021-12 | Journal article
Contributors: Budgell EP; Davies TJ; Donker T; Hopkins S; Wyllie DH; Peto TEA; Gill MJ; Llewelyn MJ; Walker AS
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central

Modelling how antimicrobial resistance spreads between wards.

eLife
2020-11 | Journal article
Contributors: Donker T
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central
grade
Preferred source (of 2)‎

An ecological comparison of hospital-level antibiotic use and mortality in 36,124,372 acute/general medicine inpatients in England

2020-09 | Preprint
Contributors: Budgell EP; Davies TJ; Donker T; Hopkins S; Wyllie D; Peto TEA; Gill M; Llewelyn MJ; Walker AS
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central
grade
Preferred source (of 2)‎

Navigating hospitals safely through the COVID-19 epidemic tide: Predicting case load for adjusting bed capacity.

Infection control and hospital epidemiology
2020-09 | Journal article
Contributors: Donker T; Bürkin FM; Wolkewitz M; Haverkamp C; Christoffel D; Kappert O; Hammer T; Busch HJ; Biever P; Kalbhenn J et al.
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central
grade
Preferred source (of 5)‎

Switching from algorithm-based to universal admission screening for COVID-19 in hospital settings

2020-08 | Preprint
Contributors: Donker T; Grundmann H; Bürkin F; Hengel H; Bürkle H; Hammer T; Wenz F; Kern W
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central
grade
Preferred source (of 2)‎

Mathematical modelling for antibiotic resistance control policy: do we know enough?

BMC infectious diseases
2019-11 | Journal article
Contributors: Knight GM; Davies NG; Colijn C; Coll F; Donker T; Gifford DR; Glover RE; Jit M; Klemm E; Lehtinen S et al.
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central

Using hospital network-based surveillance for antimicrobial resistance as a more robust alternative to self-reporting.

PloS one
2019-07 | Journal article
Contributors: Donker T; Smieszek T; Henderson KL; Walker TM; Hope R; Johnson AP; Woodford N; Crook DW; Peto TEA; Walker AS et al.
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central
grade
Preferred source (of 4)‎

When do big problems far away become smaller than the problems closer to home

2019-02 | Preprint
Contributors: Donker T; Hopkins KL; Hopkins S; Muller-Pebody B; Peto TE; Johnson AP; Woodford N; Crook DW; Walker AS; Robotham JV
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central

Rapid statistical methods for inferring intra- and inter-hospital transmission of nosocomial pathogens from whole genome sequence data

2018-10 | Preprint
Contributors: Aspbury M; Sciberras J; Corander J; Bayliss SC; Donker T; Feil EJ; James R
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central

Measuring distance through dense weighted networks: The case of hospital-associated pathogens.

PLoS computational biology
2017-08 | Journal article
Contributors: Donker T; Smieszek T; Henderson KL; Johnson AP; Walker AS; Robotham JV
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central
grade
Preferred source (of 2)‎

Population genetic structuring of methicillin-resistant <i>Staphylococcus aureus</i> clone EMRSA-15 within UK reflects patient referral patterns.

Microbial genomics
2017-07 | Journal article
Contributors: Donker T; Reuter S; Scriberras J; Reynolds R; Brown NM; Török ME; James R; Network EOEMR; Aanensen DM; Bentley SD et al.
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central

The relative importance of large problems far away versus small problems closer to home: insights into limiting the spread of antimicrobial resistance in England.

BMC medicine
2017-04 | Journal article
Contributors: Donker T; Henderson KL; Hopkins KL; Dodgson AR; Thomas S; Crook DW; Peto TEA; Johnson AP; Woodford N; Walker AS et al.
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central
grade
Preferred source (of 2)‎

Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Genome Research
2016 | Journal article
EID:

2-s2.0-84956885526

Contributors: Reuter, S.; Estee Torok, M.; Holden, M.T.G.; Reynolds, R.; Raven, K.E.; Blane, B.; Donker, T.; Bentley, S.D.; Aanensen, D.M.; Grundmann, H. et al.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus

Genome Medicine
2016 | Journal article
EID:

2-s2.0-84957633782

Contributors: Chang, H.-H.; Dordel, J.; Donker, T.; Worby, C.J.; Feil, E.J.; Hanage, W.P.; Bentley, S.D.; Huang, S.S.; Lipsitch, M.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Monitoring the spread of meticillin-resistant Staphylococcus aureus in The Netherlands from a reference laboratory perspective

Journal of Hospital Infection
2016 | Journal article
EID:

2-s2.0-84963877530

Contributors: Donker, T.; Bosch, T.; Ypma, R.J.F.; Haenen, A.P.J.; van Ballegooijen, W.M.; Heck, M.E.O.C.; Schouls, L.M.; Wallinga, J.; Grundmann, H.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

The population structure of Staphylococcus aureus in China and Europe assessed by multiple-locus variable number tandem repeat analysis; clues to geographical origins of emergence and dissemination

Clinical Microbiology and Infection
2016 | Journal article
EID:

2-s2.0-84959266810

Contributors: Yan, X.; Schouls, L.M.; Pluister, G.N.; Tao, X.; Yu, X.; Yin, J.; Song, Y.; Hu, S.; Luo, F.; Hu, W. et al.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Analysis of patient flows: basis for regional control of antibiotic resistance | Analyse van patiëntstromen. De basis voor regionale bestrijding van gevaarlijke infecties

Nederlands tijdschrift voor geneeskunde
2015 | Journal article
EID:

2-s2.0-84964989178

Contributors: Donker, T.; Ciccolini, M.; Wallinga, J.; Kluytmans, J.A.; Grundmann, H.; Friedrich, A.W.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

[Analysis of patient flows: basis for regional control of antibiotic resistance].

Nederlands tijdschrift voor geneeskunde
2015-01 | Journal article
Contributors: Donker T; Ciccolini M; Wallinga J; Kluytmans JA; Grundmann H; Friedrich AW
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central

Dispersal of antibiotic-resistant high-risk clones by hospital networks: Changing the patient direction can make all the difference

Journal of Hospital Infection
2014 | Journal article
EID:

2-s2.0-84890567157

Contributors: Donker, T.; Wallinga, J.; Grundmann, H.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Efficient surveillance for healthcare-associated infections spreading between hospitals

Proceedings of the National Academy of Sciences of the United States of America
2014 | Journal article
EID:

2-s2.0-84893836589

Contributors: Ciccolini, M.; Donker, T.; Grundmann, H.; Bonten, M.J.M.; Woolhouse, M.E.J.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier
grade
Preferred source (of 3)‎

Carbapenemase-producing Enterobacteriaceae in Europe: A survey among national experts from 39 countries, February 2013

Eurosurveillance
2013 | Journal article
EID:

2-s2.0-84888378485

Contributors: Glasner, C.; Albiger, B.; Buist, G.; Tambić Andrašević, A.; Canton, R.; Carmeli, Y.; Friedrich, A.W.; Giske, C.G.; Glupczynski, Y.; Gniadkowski, M. et al.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier
grade
Preferred source (of 3)‎

Estimating the generation interval of influenza a (H1N1) in a range of social settings

Epidemiology
2013 | Journal article
EID:

2-s2.0-84873409677

Contributors: Te Beest, D.E.; Wallinga, J.; Donker, T.; Van Boven, M.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Finding Evidence for Local Transmission of Contagious Disease in Molecular Epidemiological Datasets

PLoS ONE
2013 | Journal article
EID:

2-s2.0-84880768320

Contributors: Ypma, R.J.F.; Donker, T.; van Ballegooijen, W.M.; Wallinga, J.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Infection prevention in a connected world: The case for a regional approach

International Journal of Medical Microbiology
2013 | Journal article
EID:

2-s2.0-84880735474

Contributors: Ciccolini, M.; Donker, T.; Köck, R.; Mielke, M.; Hendrix, R.; Jurke, A.; Rahamat-Langendoen, J.; Becker, K.; Niesters, H.G.M.; Grundmann, H. et al.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Hospital networks and the dispersal of hospital-acquired pathogens by patient transfer.

PloS one
2012 | Journal article
EID:

2-s2.0-84865835090

Contributors: Donker, T.; Wallinga, J.; Slack, R.; Grundmann, H.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier
grade
Preferred source (of 3)‎

Mumps outbreak among vaccinated university students associated with a large party, the Netherlands, 2010

Vaccine
2012 | Journal article
EID:

2-s2.0-84861971870

Contributors: Greenland, K.; Whelan, J.; Fanoy, E.; Borgert, M.; Hulshof, K.; Yap, K.-B.; Swaan, C.; Donker, T.; van Binnendijk, R.; de Melker, H. et al.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Course of pandemic influenza A(H1N1) 2009 virus infection in Dutch patients.

Influenza and other respiratory viruses
2012-02 | Journal article
Contributors: Friesema IH; Meijer A; van Gageldonk-Lafeber AB; van der Lubben M; van Beek J; Donker GA; Prins JM; de Jong MD; Boskamp S; Isken LD et al.
Source: Self-asserted source
Tjibbe Donker via Europe PubMed Central

Nowcasting pandemic influenza A/H1N1 2009 hospitalizations in the Netherlands

European Journal of Epidemiology
2011 | Journal article
EID:

2-s2.0-79955614522

Contributors: Donker, T.; Van Boven, M.; Van Ballegooijen, W.M.; Van'T Klooster, T.M.; Wielders, C.C.; Wallinga, J.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Geographic distribution of Staphylococcus aureus causing invasive infections in Europe: A molecular-epidemiological analysis

PLoS Medicine
2010 | Journal article
EID:

2-s2.0-75749133613

Contributors: Grundmann, H.; Aanensen, D.M.; Van Den Wijngaard, C.C.; Spratt, B.G.; Harmsen, D.; Friedrich, A.W.; Sabat, A.J.; Muilwijk, J.; Monen, J.; Tami, A. et al.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Patient referral patterns and the spread of hospital-acquired infections through national health care networks

PLoS Computational Biology
2010 | Journal article
EID:

2-s2.0-77950837349

Contributors: Donker, T.; Wallinga, J.; Grundmann, H.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Surveillance of hospitalisations for 2009 pandemic influenza A(H1N1) in the Netherlands, 5 June - 31 December 2009.

Euro surveillance : bulletin européen sur les maladies transmissibles = European communicable disease bulletin
2010 | Journal article
EID:

2-s2.0-77950512019

Contributors: van 't Klooster, T.M.; Wielders, C.C.; Donker, T.; Isken, L.; Meijer, A.; van den Wijngaard, C.C.; van der Sande, M.A.; van der Hoek, W.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier
grade
Preferred source (of 4)‎

Transmission of novel influenza A(H1N1) in households with post-exposure antiviral prophylaxis

PLoS ONE
2010 | Journal article
EID:

2-s2.0-77955400985

Contributors: van Boven, M.; Donker, T.; van der Lubben, M.; van gageldonk-Lafeber, R.B.; Te Beest, D.E.; Koopmans, M.; Meijer, A.; Timen, A.; Swaan, C.; Dalhuijsen, A. et al.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier

Epidemiology and control of influenza A(H1N1)v in the Netherlands: the first 115 cases.

Euro surveillance : bulletin européen sur les maladies transmissibles = European communicable disease bulletin
2009 | Journal article
EID:

2-s2.0-70249099921

Contributors: Hahné, S.; Donker, T.; Meijer, A.; Timen, A.; van Steenbergen, J.; Osterhaus, A.; van der Sande, M.; Koopmans, M.; Wallinga, J.; Coutinho, R.
Source: Self-asserted source
Tjibbe Donker via Scopus - Elsevier
grade
Preferred source (of 3)‎

Peer review (7 reviews for 5 publications/grants)

Review activity for BMJ open. (2)
Review activity for Microbial genomics. (1)
Review activity for PLoS computational biology. (2)
Review activity for PloS one. (1)
Review activity for Scientific data. (1)