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Works (6)

Enhancing Mass spectrometry-based tumor immunopeptide identification: machine learning filter leveraging HLA binding affinity, aliphatic index and retention time deviation

Computational and Structural Biotechnology Journal
2024-12 | Journal article
DOI: 10.1016/j.csbj.2024.01.023
Contributors: Feifei Wei; Taku Kouro; Yuko Nakamura; Hiroki Ueda; Susumu Iiizumi; Kyoko Hasegawa; Yuki Asahina; Takeshi Kishida; Soichiro Morinaga; Hidetomo Himuro et al.
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m6ATM: a deep learning framework for demystifying the m6A epitranscriptome with Nanopore long-read RNA-seq data

Briefings in Bioinformatics
2024-09-23 | Journal article
DOI: 10.1093/bib/bbae529
Contributors: Boyi Yu; Genta Nagae; Yutaka Midorikawa; Kenji Tatsuno; Bhaskar Dasgupta; Hiroyuki Aburatani; Hiroki Ueda
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Base-resolution analysis of 5-hydroxymethylcytidine by selective oxidation and reverse transcription arrest

Organic & Biomolecular Chemistry
2021 | Journal article
DOI: 10.1039/D1OB00995H
Contributors: Kenta Koyama; Gosuke Hayashi; Hiroki Ueda; Satoshi Ota; Genta Nagae; Hiroyuki Aburatani; Akimitsu Okamoto
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nanoDoc: RNA modification detection using Nanopore raw reads with Deep One-Class Classification

2020-09-13 | Preprint
DOI: 10.1101/2020.09.13.295089
Contributors: Hiroki Ueda
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Publisher Correction: Base editors for simultaneous introduction of C-to-T and A-to-G mutations

Nature Biotechnology
2020-07 | Journal article
DOI: 10.1038/s41587-020-0585-1
Contributors: Rina C. Sakata; Soh Ishiguro; Hideto Mori; Mamoru Tanaka; Kenji Tatsuno; Hiroki Ueda; Shogo Yamamoto; Motoaki Seki; Nanami Masuyama; Keiji Nishida et al.
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Base editors for simultaneous introduction of C-to-T and A-to-G mutations

Nature Biotechnology
2020-07-01 | Journal article
DOI: 10.1038/s41587-020-0509-0
Contributors: Rina C. Sakata; Soh Ishiguro; Hideto Mori; Mamoru Tanaka; Kenji Tatsuno; Hiroki Ueda; Shogo Yamamoto; Motoaki Seki; Nanami Masuyama; Keiji Nishida et al.
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Peer review (1 review for 1 publication/grant)

Review activity for Communications biology. (1)
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