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German Research Center for Artificial Intelligence: Berlin, DE

2014 to present | Senior Researcher (Speech and Language Technology)
Employment
Source: Self-asserted source
Philippe Thomas

Works (43)

Automated recognition of functional compound-protein relationships in literature

Plos one
2020 | Journal article
Source: Self-asserted source
Philippe Thomas

Findings of the wmt 2020 biomedical translation shared task: Basque, italian and russian as new additional languages

5th Conference on Machine Translation
2020 | Conference paper
Source: Self-asserted source
Philippe Thomas

Automated recognition of functional compound-protein relationships in literature

2019-07-29 | Other
DOI: 10.1101/718205
Contributors: Kersten Döring; Ammar Qaseem; Kiran K Telukunta; Michael Becer; Philippe Thomas; Stefan Günther
Source: check_circle
Crossref

A german corpus for fine-grained named entity recognition and relation extraction of traffic and industry events

Language Resources and Evaluation. International Conference on Language Resources and Evaluation (LREC-18)
2018 | Conference paper
Source: Self-asserted source
Philippe Thomas

Bootstrapping patterns for the detection of mobility related events

2018 | Journal article
Source: Self-asserted source
Philippe Thomas

Football and Beer-a Social Media Analysis on Twitter in Context of the FIFA Football World Cup 2018

arXiv preprint arXiv:1811.03809
2018 | Journal article
Source: Self-asserted source
Philippe Thomas

SIA: a scalable interoperable annotation server for biomedical named entities

Journal of cheminformatics
2018 | Journal article
Source: Self-asserted source
Philippe Thomas

Clickbait identification using neural networks

arXiv preprint arXiv:1710.08721
2017 | Journal article
Source: Self-asserted source
Philippe Thomas

Common Round: Application of Language Technologies to Large-Scale Web Debates

Proceedings of the Software Demonstrations of the 15th Conference of the European Chapter of the Association for Computational Linguistics
2017 | Conference paper
Source: Self-asserted source
Philippe Thomas

Detecting named entities and relations in German clinical reports

International Conference of the German Society for Computational Linguistics and Language Technology
2017 | Conference paper
Source: Self-asserted source
Philippe Thomas

Findings of the wmt 2017 biomedical translation shared task

Proceedings of the Second Conference on Machine Translation
2017 | Conference paper
Source: Self-asserted source
Philippe Thomas

SIA: Scalable Interoperable Annotation Server

BioCreative V.5 Challenge Evaluation Workshop.
2017 | Conference paper
Source: Self-asserted source
Philippe Thomas

Streaming Text Analytics for Real-Time Event Recognition.

RANLP
2017 | Conference paper
Source: Self-asserted source
Philippe Thomas

Twitter Geolocation Prediction Using Neural Networks

International Conference of the German Society for Computational Linguistics and Language Technology
2017 | Conference paper
Source: Self-asserted source
Philippe Thomas

Integrating 400 million variants from 80,000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts

BMC bioinformatics
2016 | Journal article
Source: Self-asserted source
Philippe Thomas

PubMedPortable: a framework for supporting the development of text mining applications

Plos one
2016 | Journal article
Source: Self-asserted source
Philippe Thomas

Real-Time Discovery and Geospatial Visualization of Mobility and Industry Events from Large-Scale, Heterogeneous Data Streams

ACL
2016 | Conference paper
Source: Self-asserted source
Philippe Thomas

SETH detects and normalizes genetic variants in text

Bioinformatics
2016 | Journal article
Source: Self-asserted source
Philippe Thomas

Assembly of a comprehensive regulatory network for the mammalian circadian clock: a bioinformatics approach

PloS one
2015 | Journal article
Source: Self-asserted source
Philippe Thomas

Computer-assisted curation of a human regulatory core network from the biological literature

Bioinformatics
2015 | Journal article
Source: Self-asserted source
Philippe Thomas

Robust relationship extraction in the biomedical domain

2015 | Journal article
Source: Self-asserted source
Philippe Thomas

Ras-mediated deregulation of the circadian clock in cancer

PLoS genetics
2014 | Journal article
Source: Self-asserted source
Philippe Thomas

SETH: SNP extraction tool for human variations

2014 | Other
Source: Self-asserted source
Philippe Thomas

A detailed error analysis of 13 kernel methods for protein-protein interaction extraction

BMC bioinformatics
2013 | Journal article
Source: Self-asserted source
Philippe Thomas

Comprehensive benchmark of gene ontology concept recognition tools

Proceedings of BioLINK Special Interest Group. Berlin, Germany: Proceedings of BioLINK SIG
2013 | Journal article
Source: Self-asserted source
Philippe Thomas

Experiences from Developing the Domain-Specific Entity Search Engine GeneView

Datenbanksysteme für Business, Technologie und Web (BTW) 2013
2013 | Conference paper
Source: Self-asserted source
Philippe Thomas

Extended feature set for chemical named entity recognition and indexing

BioCreative Challenge Evaluation Workshop
2013 | Conference paper
Source: Self-asserted source
Philippe Thomas

HistoNer: Histone modification extraction from text

BioLINK SIG: Linking Literature, Information and Knowledge for Biology
2013 | Conference paper
Source: Self-asserted source
Philippe Thomas

WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting

SemEval
2013 | Conference paper
Source: Self-asserted source
Philippe Thomas

Comparing semantically enriched experimental protein networks in colorectal cancer

Humboldt Universität zu Berlin
2012 | Journal article
Source: Self-asserted source
Philippe Thomas

GeneView: a comprehensive semantic search engine for PubMed

Nucleic acids research
2012 | Journal article
Source: Self-asserted source
Philippe Thomas

Improving Distantly Supervised Extraction of Drug-Drug and Protein-Protein Interactions

ROBUS-UNSUP 2012: Joint Workshop on Unsupervised and Semi-Supervised Learning in NLP 2012
2012 | Conference paper
Source: Self-asserted source
Philippe Thomas

Weakly Labeled Corpora as Silver Standard for Drug-Drug and Protein-Protein Interaction

Third Workshop on Building and Evaluating Resources for Biomedical Text Mining Workshop Programme
2012 | Conference paper
Source: Self-asserted source
Philippe Thomas

BioCreative III interactive task: an overview

BMC Bioinformatics
2011 | Journal article
Source: Self-asserted source
Philippe Thomas

Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers

BMC Bioinformatics
2011 | Journal article
Source: Self-asserted source
Philippe Thomas

Classical Hodgkin lymphoma shows epigenetic features of an abortive plasma cellular differentiation

Haematologica
2011 | Journal article
Source: Self-asserted source
Philippe Thomas

Learning to Extract Protein--Protein Interactions using Distant Supervision

RANLP 2011
2011 | Conference paper
Source: Self-asserted source
Philippe Thomas

Not all links are equal: exploiting dependency types for the extraction of protein-protein interactions from text

BioNLP 2011 Workshop, 2011
2011 | Conference paper
Source: Self-asserted source
Philippe Thomas

Relation Extraction for Drug-Drug Interactions using Ensemble Learning

DDIExtraction2011: First Challenge Task: Drug-Drug Interaction Extraction at SEPLN 2011
2011 | Conference paper
Source: Self-asserted source
Philippe Thomas

A comprehensive benchmark of kernel methods to extract protein--protein interactions from literature

PLoS computational biology
2010 | Journal article
Source: Self-asserted source
Philippe Thomas

Gene mention normalization in full texts using GNAT and LINNAEUS

BioCreative III Workshop
2010 | Conference paper
Source: Self-asserted source
Philippe Thomas

GeneView--Gene-Centric Ranking of Biomedical Text

BioCreative III
2010 | Conference paper
Source: Self-asserted source
Philippe Thomas

The role of epigenetic modifications in the extinction of the B-cell gene expression program in classical Hodgkin lymphoma: V446

Onkologie
2010 | Journal article
Source: Self-asserted source
Philippe Thomas
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