Personal information

Bioinformatics, Genomics, Exome sequencing, Proteomics
India, United Kingdom

Activities

Employment (3)

University of Glasgow: Glasgow, GB

2023-10-29 to present | Bioinformatician (Infectious Disease Ecology)
Employment
Source: Self-asserted source
Sandeep Kasaragod

St George's University of London: London, London, GB

2021-03-08 to 2023-03-31 | Bioinformatician (Institute for Infection and Immunity)
Employment
Source: Self-asserted source
Sandeep Kasaragod

Yenepoya (Deemed to be University): Mangalore, Karnataka, IN

2018-05-02 to 2021-02-28 | Senior Research Fellow (Yenepoya Research Centre)
Employment
Source: Self-asserted source
Sandeep Kasaragod

Education and qualifications (2)

Yenepoya (Deemed to be University): Mangalore, Karnataka, IN

2017-04-01 to 2024-04-20 | PhD (Center for Systems Biology and Molecular Medicine)
Education
Source: Self-asserted source
Sandeep Kasaragod

Mangalore University: Mangalagangotri, Karnataka, IN

2011-10-01 to 2014-07-10 | Master of Computer Application (Computer Science)
Education
Source: Self-asserted source
Sandeep Kasaragod

Works (13)

Understanding the Transfer and Persistence of Antimicrobial Resistance in Aquaculture Using a Model Teleost Gut System

2024-07-30 | Preprint
Contributors: Alexandru Stefan Barcan; Joseph Humble; Sandeep Kasaragod; Mohammad Saiful Islam Sajib; Rares Andrei Barcan; Philip McGinnity; Timothy J. Welch; Brendan Robertson; Emanuel Vamanu; Antonella Bacigalupo et al.
Source: check_circle
Crossref

Mapping the phylogeny and lineage history of geographically distinct BCG vaccine strains

Microbial Genomics
2023-08-01 | Journal article
Contributors: Linzy Elton; Sandeep Kasaragod; Helen Donoghue; Hussain A. Safar; Priscilla Amankwah; Alimuddin Zumla; Adam A. Witney; Timothy D. McHugh
Source: check_circle
Crossref

Development of a Spectral Library for the Discovery of Altered Genomic Events in Mycobacterium avium Associated With Virulence Using Mass Spectrometry–Based Proteogenomic Analysis

Molecular & Cellular Proteomics
2023-05 | Journal article
Contributors: Chinmaya Narayana Kotimoole; Neelam Antil; Sandeep Kasaragod; Santosh Kumar Behera; Anjana Aravind; Norbert Reiling; Trude Helen Flo; Thottethodi Subrahmanya Keshava Prasad
Source: check_circle
Crossref

A computational workflow for predicting cancer neo-antigens.

Bioinformation
2022-03-31 | Journal article
Contributors: Kasaragod S; Kotimoole CN; Gurtoo S; Keshava Prasad TS; Gowda H; Prashant Kumar Modi
Source: Self-asserted source
Sandeep Kasaragod

Towards Phytopathogen Diagnostics? Coconut Bud Rot Pathogen <i>Phytophthora palmivora</i> Mycelial Proteome Analysis Informs Genome Annotation.

Omics : a journal of integrative biology
2022-03-29 | Journal article
Contributors: Nekrakalaya B; Mohammad Arefian; Kotimoole CN; Krishna RM; Palliyath GK; Najar MA; Behera SK; Kasaragod S; Santhappan P; Hegde V et al.
Source: Self-asserted source
Sandeep Kasaragod

Dissecting <i>Plasmodium yoelii</i> Pathobiology: Proteomic Approaches for Decoding Novel Translational and Post-Translational Modifications.

ACS omega
2022-03-02 | Journal article
Contributors: Rex D. A. B; Arun Patil; Prashant Kumar Modi; Kandiyil MK; Kasaragod S; Sneha Pinto; Tanneru N; Sijwali PS; Prasad, T. S. K.
Source: Self-asserted source
Sandeep Kasaragod

MS2Compound: A User-Friendly Compound Identification Tool for LC-MS/MS-Based Metabolomics Data

OMICS: A Journal of Integrative Biology
2021-06-01 | Journal article
Contributors: Santosh Kumar Behera; Sandeep Kasaragod; Gayathree Karthikkeyan; Chinmaya Narayana Kotimoole; Rajesh Raju; Thottethodi Subrahmanya Keshava Prasad; Yashwanth Subbannayya
Source: check_circle
Crossref

CusVarDB: A tool for building customized sample-specific variant protein database from next-generation sequencing datasets [version 2; peer review: 2 approved, 1 not approved]

2020-11-16 | Journal article
Part of ISSN: 2046-1402
Contributors: Sandeep Kasaragod; Varshasnata Mohanty; Ankur Tyagi; Santosh Kumar Behera; Arun H. Patil; Sneha M. Pinto; T. S. Keshava Prasad; Prashant Kumar Modi; Harsha Gowda
Source: check_circle
F1000
grade
Preferred source (of 2)‎

Assembly and Annotation of the Nuclear and Organellar Genomes of a Dwarf Coconut (Chowghat Green Dwarf) Possessing Enhanced Disease Resistance.

Omics : a journal of integrative biology
2020-11-10 | Journal article
Contributors: Muliyar RK; Chowdappa P; Behera SK; Kasaragod S; Gangaraj KP; Kotimoole CN; Nekrakalaya B; Varshasnata Mohanty; Sampgod RB; Banerjee G et al.
Source: Self-asserted source
Sandeep Kasaragod

CusVarDB: A tool for building customized sample-specific variant protein database from next-generation sequencing datasets

F1000Research
2020-05-11 | Journal article
Contributors: Sandeep Kasaragod; Varshasnata Mohanty; Ankur Tyagi; Santosh Kumar Behera; Arun H. Patil; Sneha M. Pinto; T. S. Keshava Prasad; Prashant Kumar Modi; Harsha Gowda
Source: check_circle
Crossref

The whole-genome sequence analysis of Enterobacter cloacae strain Ghats1: insights into endophytic lifestyle-associated genomic adaptations.

Archives of microbiology
2020-03-12 | Journal article
Contributors: Shastry RP; Welch M; Rai VR; Ghate SD; Sandeep K; PD Rekha
Source: Self-asserted source
Sandeep Kasaragod

Proteomics and Visual Health Research: Proteome of the Human Sclera Using High-Resolution Mass Spectrometry.

Omics : a journal of integrative biology
2019-02-01 | Journal article
Contributors: Varshasnata Mohanty; Yashwanth Subbannayya; Najar MA; Sneha Pinto; Kasaragod S; Karuppiah H; S Bhuvaragavan; Singh KK; Dalal S; Manikkoth S et al.
Source: Self-asserted source
Sandeep Kasaragod

Dissecting Candida Pathobiology: Post-Translational Modifications on the Candida tropicalis Proteome.

Omics : a journal of integrative biology
2018-08-01 | Journal article
Contributors: Patil AH; Datta KK; Behera SK; Kasaragod S; Sneha Pinto; Koyangana SG; Premendu Mathur; Gowda H; Akhilesh Pandey; Prasad, T. S. K.
Source: Self-asserted source
Sandeep Kasaragod

Peer review (6 reviews for 2 publications/grants)

Review activity for Computers in biology and medicine. (3)
Review activity for Gene reports. (3)