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Works (7)

Maternal group B Streptococcus decreases infant length and alters the early-life microbiome: a prospective cohort study

Annals of Medicine
2025-12-31 | Journal article
DOI: 10.1080/07853890.2024.2442070
Contributors: Shanshan Li; Qijun Liang; Wei Qing; Zhencheng Fang; Chunlei Yuan; Shilei Pan; Hairui Xie; Xiaocong Li; Muxuan Chen; Yan He et al.
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metaProbiotics: a tool for mining probiotic from metagenomic binning data based on a language model

Briefings in Bioinformatics
2024-01-22 | Journal article
DOI: 10.1093/bib/bbae085
Contributors: Shufang Wu; Tao Feng; Waijiao Tang; Cancan Qi; Jie Gao; Xiaolong He; Jiaxuan Wang; Hongwei Zhou; Zhencheng Fang
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MOBFinder: a tool for mobilization typing of plasmid metagenomic fragments based on a language model

GigaScience
2024-01-02 | Journal article
DOI: 10.1093/gigascience/giae047
Contributors: Tao Feng; Shufang Wu; Hongwei Zhou; Zhencheng Fang
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DeePVP: Identification and classification of phage virion proteins using deep learning

GigaScience
2022-08-11 | Journal article
DOI: 10.1093/gigascience/giac076
Contributors: Zhencheng Fang; Tao Feng; Hongwei Zhou; Muxuan Chen
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Identification of the conjugative and mobilizable plasmid fragments in the plasmidome using sequence signatures

Microbial Genomics
2020-11-01 | Journal article
DOI: 10.1099/mgen.0.000459
Contributors: Zhencheng Fang; Hongwei Zhou
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PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning

Bioinformatics
2020-05-01 | Journal article
DOI: 10.1093/bioinformatics/btaa103
Contributors: Zhencheng Fang; Jie Tan; Shufang Wu; Mo Li; Chunhui Wang; Yongchu Liu; Huaiqiu Zhu; Inanc Birol
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PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning

GigaScience
2019-06-01 | Journal article
DOI: 10.1093/gigascience/giz066
Contributors: Zhencheng Fang; Jie Tan; Shufang Wu; Mo Li; Congmin Xu; Zhongjie Xie; Huaiqiu Zhu
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Peer review (1 review for 1 publication/grant)

Review activity for GigaScience. (1)
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