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Transposable elements, Polyploidy, Brassicaceae, Plant evolution

Activities

Employment (4)

University of Fribourg: Fribourg, CH

2023 to present | Senior researcher (Department of Biology)
Employment
Source: Self-asserted source
Rimjhim Roy Choudhury

École Polytechnique Fédérale de Lausanne: Lausanne, CH

2022 to 2022 | Scientist (Life Sciences)
Employment
Source: Self-asserted source
Rimjhim Roy Choudhury

University of Zurich: Zurich, CH

2020 to 2021 | PostDoc (Institute for Systematic and Evolutionary Botany)
Employment
Source: Self-asserted source
Rimjhim Roy Choudhury

Universität Bern: Bern, BE, CH

2018 to 2020 | Postdoctoral Researcher
Employment
Source: Self-asserted source
Rimjhim Roy Choudhury

Education and qualifications (1)

Universität Bern: Bern, BE, CH

Ph.D.
Education
Source: Self-asserted source
Rimjhim Roy Choudhury

Funding (2)

Evolutionary significance of transposable elements in providing a source of phenotypic novelties and diversification of biological lineages

2014-09 to 2017-09 | Salary award
Swiss Confederation (Bern, CH)
GRANT_NUMBER:

2014.0821

Source: Self-asserted source
Rimjhim Roy Choudhury

Structural genomic variation mediating adaptative evolution of wild outcrossing Arabidopsis species

Grant
Swiss National Science Foundation (Bern, CH)
GRANT_NUMBER:

P2BEP3_195345

Source: Self-asserted source
Rimjhim Roy Choudhury

Works (14)

Locally Specific Genome‐Wide Signatures of Adaptation to Environmental Variation at High Resolution in an Alpine Plant

Molecular Ecology
2025-02 | Journal article
Contributors: Aude Rogivue; Kevin Leempoel; Annie S. Guillaume; Rimjhim Roy Choudhury; François Felber; Michel Kasser; Stéphane Joost; Christian Parisod; Felix Gugerli
Source: check_circle
Crossref

Biased Retention of Environment-Responsive Genes Following Genome Fractionation.

Molecular biology and evolution
2024-08 | Journal article
Contributors: Beringer M; Choudhury RR; Mandáková T; Grünig S; Poretti M; Leitch IJ; Lysak MA; Parisod C
Source: Self-asserted source
Rimjhim Roy Choudhury via Europe PubMed Central
grade
Preferred source (of 2)‎

The genomes of Darwin's primroses reveal chromosome‐scale adaptive introgression and differential permeability of species boundaries

New Phytologist
2024-01 | Journal article
Contributors: Rebecca L. Stubbs; Spyros Theodoridis; Emiliano Mora‐Carrera; Barbara Keller; Giacomo Potente; Narjes Yousefi; Paul Jay; Étienne Léveillé‐Bourret; Rimjhim Roy Choudhury; Ferhat Celep et al.
Source: check_circle
Crossref

Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles.

Nature communications
2021-08 | Journal article
Contributors: Konečná V; Bray S; Vlček J; Bohutínská M; Požárová D; Choudhury RR; Bollmann-Giolai A; Flis P; Salt DE; Parisod C et al.
Source: Self-asserted source
Rimjhim Roy Choudhury via Europe PubMed Central

Transcriptional activity of transposable elements along an elevational gradient in Arabidopsis arenosa.

Mobile DNA
2021-02 | Journal article
Contributors: Wos G; Choudhury RR; Kolář F; Parisod C
Source: Self-asserted source
Rimjhim Roy Choudhury via Europe PubMed Central

The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic

Molecular Ecology Resources
2020-10-15 | Journal article
Part of ISSN: 1755-098X
Part of ISSN: 1755-0998
Source: Self-asserted source
Rimjhim Roy Choudhury
grade
Preferred source (of 2)‎

Genome‐wide variation in nucleotides and retrotransposons in alpine populations of Arabis alpina (Brassicaceae)

Molecular Ecology Resources
2019-05 | Journal article
Contributors: Aude Rogivue; Rimjhim R. Choudhury; Stefan Zoller; Stéphane Joost; François Felber; Michel Kasser; Christian Parisod; Felix Gugerli
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Impact of polymorphic transposable elements on linkage disequilibrium along chromosomes

Molecular Ecology
2019-03 | Journal article
Contributors: Rimjhim Roy Choudhury; Aude Rogivue; Felix Gugerli; Christian Parisod
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Lateral transfers of large DNA fragments spread functional genes among grasses

Proceedings of the National Academy of Sciences
2019-03-05 | Journal article
Contributors: Luke T. Dunning; Jill K. Olofsson; Christian Parisod; Rimjhim Roy Choudhury; Jose J. Moreno-Villena; Yang Yang; Jacqueline Dionora; W. Paul Quick; Minkyu Park; Jeffrey L. Bennetzen et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Jumping genes: Genomic ballast or powerhouse of biological diversification.

Molecular ecology
2017-09 | Journal article
Contributors: Choudhury RR; Parisod C
Source: Self-asserted source
Rimjhim Roy Choudhury via Europe PubMed Central

Resolving fine-grained dynamics of retrotransposons: comparative analysis of inferential methods and genomic resources.

The Plant journal : for cell and molecular biology
2017-04 | Journal article
Contributors: Choudhury RR; Neuhaus JM; Parisod C
Source: Self-asserted source
Rimjhim Roy Choudhury via Europe PubMed Central

Changes in the Chlorophyll Content and Cytokinin Levels in the Top Three Leaves of New Plant Type Rice During Grain Filling

Journal of Plant Growth Regulation
2014-03 | Journal article
Part of ISSN: 0721-7595
Part of ISSN: 1435-8107
Source: Self-asserted source
Rimjhim Roy Choudhury

Development of flow cytometric protocol for nuclear DNA content estimation and determination of chromosome number in Pongamia pinnata L., a valuable biodiesel plant.

Applied biochemistry and biotechnology
2013-10 | Journal article
Contributors: Ramesh AM; Basak S; Choudhury RR; Rangan L
Source: Self-asserted source
Rimjhim Roy Choudhury via Europe PubMed Central

Nuclear DNA content of Pongamia pinnata L. and genome size stability of in vitro-regenerated plantlets.

Protoplasma
2013-08 | Journal article
Contributors: Choudhury RR; Basak S; Ramesh AM; Rangan L
Source: Self-asserted source
Rimjhim Roy Choudhury via Europe PubMed Central

Peer review (9 reviews for 7 publications/grants)

Review activity for Communications biology. (1)
Review activity for Journal of Advanced Research. (1)
Review activity for Molecular genetics and genomics. (2)
Review activity for Nature communications (1)
Review activity for Plant science. (1)
Review activity for PloS one. (2)
Review activity for Scientific data. (1)