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Employment (3)

Faculty of Biology and Medicine, Ludwig Lausanne Branch: Lausanne, Vaud, CH

2021-03-01 to present | Postdoctoral researcher (Laboratory Computational cancer biology)
Employment
Source: Self-asserted source
Aurélie Gabriel

International Agency for Research on Cancer: Lyon, Rhône-Alpes, FR

2017-10-01 to present | PhD student (Genetic Cancer Susceptibility group)
Employment
Source: Self-asserted source
Aurélie Gabriel

Fondation Synergie Lyon Cancer : Lyon, Auvergne-Rhône-Alpes, FR

2016-04 to 2016-07 | Intern (Bioinformatics platform)
Employment
Source: Self-asserted source
Aurélie Gabriel

Education and qualifications (1)

Institut National des Sciences Appliquées de Lyon: Villeurbanne, Auvergne-Rhône-Alpes, FR

2012-09 to 2017-07 | Master of Science in Bioscience (Bioinformatics and Modeling)
Education
Source: Self-asserted source
Aurélie Gabriel

Works (9)

SuperSpot: coarse graining spatial transcriptomics data into metaspots

2024-12-09 | Journal article
DOI: 10.1093/bioinformatics/btae734
Contributors: Matei Teleman; Aurélie AG Gabriel; Léonard Hérault; David Gfeller
Source: Self-asserted source
Aurélie Gabriel

Robust estimation of cancer and immune cell-type proportions from bulk tumor ATAC-Seq data

eLife
2024-10-09 | Journal article
DOI: 10.7554/eLife.94833.4
Contributors: Aurélie Anne-Gaëlle Gabriel; Julien Racle; Maryline Falquet; Camilla Jandus; David Gfeller
Source: check_circle
Crossref

Building and analyzing metacells in single-cell genomics data

Molecular Systems Biology
2024-05-29 | Journal article
DOI: 10.1038/s44320-024-00045-6
Contributors: Mariia Bilous; Léonard Hérault; Aurélie AG Gabriel; Matei Teleman; David Gfeller
Source: check_circle
Crossref

Metacells untangle large and complex single-cell transcriptome networks

BMC Bioinformatics
2022-08-13 | Journal article
DOI: 10.1186/s12859-022-04861-1
Part of ISSN: 1471-2105
Contributors: Mariia Bilous; Loc Tran; Chiara Cianciaruso; Aurélie Gabriel; Hugo Michel; Santiago J. Carmona; Mikael J. Pittet; David Gfeller
Source: Self-asserted source
Aurélie Gabriel

Genetic Analysis of Lung Cancer and the Germline Impact on Somatic Mutation Burden

JNCI: Journal of the National Cancer Institute
2022-08-08 | Journal article
DOI: 10.1093/jnci/djac087
Contributors: Aurélie A G Gabriel; Joshua R Atkins; Ricardo C C Penha; Karl Smith-Byrne; Valerie Gaborieau; Catherine Voegele; Behnoush Abedi-Ardekani; Maja Milojevic; Robert Olaso; Vincent Meyer et al.
Source: check_circle
Crossref

A molecular map of lung neuroendocrine neoplasms

GigaScience
2020-10-30 | Journal article
DOI: 10.1093/gigascience/giaa112
Contributors: Aurélie A G Gabriel; Emilie Mathian; Lise Mangiante; Catherine Voegele; Vincent Cahais; Akram Ghantous; James D McKay; Nicolas Alcala; Lynnette Fernandez-Cuesta; Matthieu Foll
Source: check_circle
Crossref

Needlestack: an ultra-sensitive variant caller for multi-sample next generation sequencing data

NAR Genomics and Bioinformatics
2020-06-01 | Journal article
DOI: 10.1093/nargab/lqaa021
Part of ISSN: 2631-9268
Source: Self-asserted source
Aurélie Gabriel

Transcriptome‐wide association study reveals candidate causal genes for lung cancer

International Journal of Cancer
2020-04 | Journal article
DOI: 10.1002/ijc.32771
Part of ISSN: 0020-7136
Part of ISSN: 1097-0215
Source: Self-asserted source
Aurélie Gabriel

Integrative and comparative genomic analyses identify clinically relevant pulmonary carcinoid groups and unveil the supra-carcinoids.

Nature communications
2019-08-20 | Journal article
DOI: 10.1038/s41467-019-11276-9
PMID: 31431620
PMC: PMC6702229
Source: Self-asserted source
Aurélie Gabriel
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