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Normalization strategies for lipidome data in cell line panels

Journal of Chemometrics
2024-12-08 | Journal article
OTHER-ID:

5c8c31a8-7001-4e6e-a251-bc3febb08944

WOSUID:

001373963800001

Contributors: Leegwater; H.; Zhang; Z.; Zhang; X.; Hankemeier; T,; Harms; A.C.; Zweemer; A.J.M.; Le Dévédec S.E.; Kindt; A.S.D.
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Leiden University

Normalization strategies for lipidome data in cell line panels

2024-07-18 | Preprint
Contributors: Hanneke Leegwater; Zhengzheng Zhang; Xiaobing Zhang; Thomas Hankemeier; Amy C. Harms; Annelien J. M. Zweemer; Sylvia E. Le Dévédec; Alida Kindt
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Oxygen-dependent interactions between the ruthenium cage and the photoreleased inhibitor in NAMPT-targeted photoactivated chemotherapy

Journal of Medicinal Chemistry
2024-06-26 | Journal article
OTHER-ID:

bb1549a9-616e-416a-8a26-29ee8303e9a3

Contributors: Abyar; S.; Huang; L.; Husiev; Y.; Bretin; L.R.; Chau; B.; Vadde; R.; Wildeman; J.H.; Belfor; K.; Wijyay; L.S.; Noord et al.
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Leiden University

Cell viability imaging in tumor spheroids via DNA binding of a ruthenium(ii) light-switch complex

Chemical Communications
2024-06-13 | Journal article
OTHER-ID:

27b50959-c579-4278-8a17-6c52dfeffe82

Contributors: Vadde; R.; Wijaya; L.S.; Beztsinna; N.; Griend; C.J. van de; Water; B. van de; Bonnet; S.A.; Le Dévédec; S.E.
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Leiden University
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Lactate secreted by glycolytic conjunctival melanoma cells attracts and polarizes macrophages to drive angiogenesis in zebrafish xenografts

Angiogenesis
2024-06-06 | Journal article
OTHER-ID:

ddfe5418-d99b-419e-85e1-1b2ec1fd5234

Contributors: Yin; J.; Forn Cuní; G.; Surendran; A.M.; Lopes Bastos; B.M.; Pouliopoulou; N.; Jager; M.J.; Le Dévédec; S.E.; Chen; Q.; Snaar; B.E.
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Leiden University

Red‐Light Activation of a Microtubule Polymerization Inhibitor via Amide Functionalization of the Ruthenium Photocage

Angewandte Chemie
2024-01-25 | Journal article
Contributors: Ludovic Bretin; Yurii Husiev; Vadde Ramu; Liyan Zhang; Matthijs Hakkennes; Selda Abyar; Andrew C. Johns; Sylvia E. Le Dévédec; Tania Betancourt; Alexander Kornienko et al.
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Red‐Light Activation of a Microtubule Polymerization Inhibitor via Amide Functionalization of the Ruthenium Photocage

Angewandte Chemie International Edition
2024-01-25 | Journal article
Contributors: Ludovic Bretin; Yurii Husiev; Vadde Ramu; Liyan Zhang; Matthijs Hakkennes; Selda Abyar; Andrew C. Johns; Sylvia E. Le Dévédec; Tania Betancourt; Alexander Kornienko et al.
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A network-based transcriptomic landscape of HepG2 cells uncovering causal gene-cytotoxicity interactions underlying drug-induced liver injury

Toxicological Sciences
2023-11-28 | Journal article
OTHER-ID:

960c4398-f3e1-453b-8671-29945dd09497

Contributors: Wijaya; L.S.; Gabor; A.; Pot; I.E.; Have; L. van de; Saez-Rodriguez; J.; Stevens; J.L.; Le Dévédec; S.E.; Callegaro; G.; Water; B. van de
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Leiden University

Community-developed checklists for publishing images and image analyses

Nature Methods
2023-09-14 | Journal article
OTHER-ID:

ffc59247-442a-45fc-95c2-6878821f9a3c

Contributors: Schmied; C.; Nelson; M.S.; Avilov; S.; Bakker; G.J.; Bertocchi; C.; Bischof; J.; Boehm; U.; Brocher; J.; Carvalho; M.T.; Chiritescu et al.
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Leiden University

Human-induced pluripotent stem cell reporters for high-content screening of stress response activation identifying target organ-specific toxicities

Toxicology Letters
2023-09-01 | Journal article
OTHER-ID:

a4952d07-ca13-4a6a-8274-c2130b73cbc8

WOSUID:

001065901700445

Contributors: Danilyuk; T.Y.; Niemeijer; M.C.; Wijaya; L.S.; Snijders; K.; Berk; L. van der; Braak; S.J. ter; Callegaro; G.; Bouwman; R.J.P.; Le Dévédec S.E.; Water; B. van de
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Leiden University

Development of an Affinity-Based Probe to Profile Endogenous Human Adenosine A3 Receptor Expression

Journal of Medicinal Chemistry
2023-08-24 | Journal article
Contributors: Bert L. H. Beerkens; Inge M. Snijders; Joep Snoeck; Rongfang Liu; Anton T. J. Tool; Sylvia E. Le Dévédec; Willem Jespers; Taco W. Kuijpers; Gerard J.P. van Westen; Laura H. Heitman et al.
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FAIR High Content Screening in Bioimaging

Scientific Data
2023-07-17 | Journal article
Contributors: Rohola Hosseini; Matthijs Vlasveld; Joost Willemse; Bob van de Water; Sylvia E. Le Dévédec; Katherine J. Wolstencroft
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Cyclic Ruthenium-Peptide Conjugates as Integrin-Targeting Phototherapeutic Prodrugs for the Treatment of Brain Tumors.

Journal of the American Chemical Society
2023-06-28 | Journal article | Author
Contributors: Zhang L; Peiyuan Wang; Zhou XQ; Ludovic BRETIN; Zeng X; Yurii Husiev; Polanco EA; Zhao G; Wijaya LS; Tarita Biver et al.
Source: Self-asserted source
Sylvia Emmanuelle Le Dévédec
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Single-cell metabolomics by mass spectrometry: ready for primetime?

Current opinion in biotechnology
2023-06-23 | Journal article
Contributors: Zhang C; Le Dévédec SE; Ali A; Hankemeier T
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Sylvia Emmanuelle Le Dévédec
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Systematic screening identifies ABCG2 as critical factor underlying synergy of kinase inhibitors with transcriptional CDK inhibitors

Breast Cancer Research
2023-05-05 | Journal article
Part of ISSN: 1465-542X
Contributors: Vera E. van der Noord; Wanda van der Stel; Gijs Louwerens; Danielle Verhoeven; Hendrik J. Kuiken; Cor Lieftink; Melanie Grandits; Gerhard F. Ecker; Roderick L. Beijersbergen; Peter Bouwman et al.
Source: Self-asserted source
Sylvia Emmanuelle Le Dévédec
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Differential response of luminal and basal breast cancer cells to acute and chronic hypoxia

Breast Cancer Research and Treatment
2023-04 | Journal article
Contributors: Qiuyu Liu; Nasi Liu; Vera van der Noord; Wanda van der Stel; Bob van de Water; Erik H. J. Danen; Sylvia E. Le Dévédec
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Data from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Data from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary Figure S1 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary Figure S1 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary Figure S2 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary Figure S2 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary Figure S3 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary Figure S3 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary Figure S4 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary Figure S4 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary Figure S5 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary Figure S5 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary Figure S6 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
Source: check_circle
Crossref

Supplementary Figure S6 from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary information from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary information from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary tables from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary tables from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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Crossref

Supplementary video from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
Source: check_circle
Crossref

Supplementary video from Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis

2023-03-31 | Preprint
Contributors: Sijia Liu; Román González-Prieto; Mengdi Zhang; Paul P. Geurink; Raymond Kooij; Prasanna Vasudevan Iyengar; Maarten van Dinther; Erik Bos; Xiaobing Zhang; Sylvia E. Le Dévédec et al.
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A Network-based Transcriptomic Landscape of HepG2 cells to Uncover Causal Gene Cytotoxicity Interactions Underlying Drug-Induced Liver Injury

2023-01-18 | Preprint
Contributors: Lukas S. Wijaya; Attila Gabor; Iris E. Pot; Luca van de Have; Julio Saez-Rodriguez; James L. Stevens; Sylvia E. Le Dévédec; Giulia Callegaro; Bob van de Water
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Crossref

Acute vs. chronic vs. intermittent hypoxia in breast Cancer: a review on its application in in vitro research

Molecular Biology Reports
2022-11 | Journal article
Contributors: Qiuyu Liu; Victoria A.C. Palmgren; Erik HJ Danen; Sylvia E. Le Dévédec
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A Chemical Biological Approach to Study G Protein-Coupled Receptors: Labeling the Adenosine A1 Receptor Using an Electrophilic Covalent Probe

ACS Chemical Biology
2022-11-18 | Journal article
Contributors: Bert L. H. Beerkens; Çağla Koç; Rongfang Liu; Bogdan I. Florea; Sylvia E. Le Dévédec; Laura H. Heitman; Adriaan P. IJzerman; Daan van der Es
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User-friendly high-content imaging analysis on a single desktop: R package H5CellProfiler

[]
2022-10-08 | Preprint | Author
Contributors: Steven Wink; Gerhard Burger; Sylvia Emmanuelle Le Dévédec; Joost Beltman; Bob van de Water
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Sylvia Emmanuelle Le Dévédec
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Targeting the Heterogeneous Genomic Landscape in Triple-Negative Breast Cancer through Inhibitors of the Transcriptional Machinery

Cancers
2022-09-07 | Journal article
Contributors: Vera E. van der Noord; Bob van de Water; Sylvia E. Le Dévédec
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Hypoxia Triggers TAZ Phosphorylation in Basal A Triple Negative Breast Cancer Cells

International Journal of Molecular Sciences
2022-09-04 | Journal article
Contributors: Qiuyu Liu; Wanda van der Stel; Vera E. van der Noord; Hanneke Leegwater; Bircan Coban; Kim Elbertse; Joannes T. M. Pruijs; Olivier J. M. Béquignon; Gerard van Westen; Sylvia E. Le Dévédec et al.
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Crosstalk between Hypoxia and Extracellular Matrix in the Tumor Microenvironment in Breast Cancer

Genes
2022-09-03 | Journal article
Contributors: Yasmin Dekker; Sylvia E. Le Dévédec; Erik H. J. Danen; Qiuyu Liu
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Model-based translation of DNA damage signaling dynamics across cell types

PLOS Computational Biology
2022-07-08 | Journal article
Contributors: Muriel M. Heldring; Pedro Mendes; Lukas S. Wijaya; Marije Niemeijer; Huan Yang; Talel Lakhal; Sylvia E. Le Dévédec; Bob van de Water; Joost B. Beltman
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Impedance-based phenotypic readout of transporter function

Frontiers in Pharmacology
2022-05-23 | Journal article
OTHER-ID:

8b7e497a-8164-41e0-a8f8-ae96884a2610

Contributors: Sijben; H.J.; Dall’ Acqua; L.; Liu; R.; Jarret; A.; Christodoulaki; E.; Onstein; S.; Wolf; G.; Verburgt; S.J.; Le Dévédec; S.E.; Wiedmer et al.
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Leiden University

High-content high-throughput imaging reveals distinct connections between mitochondrial morphology and functionality for oxphos complex I, III, and V inhibitors

Cell Biology and Toxicology
2022-05-04 | Journal article
OTHER-ID:

9575194e-17d4-418f-807e-ec59a93fce08

Contributors: Stel; W. van der; Yang; H.; Le Dévédec; S.E.; Water; B. van de; Beltman; J.B.; Danen; E.H.J.
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Leiden University

Density-dependent migration characteristics of cancer cells driven by pseudopod interaction

Frontiers in Cell and Developmental Biology
2022-04-25 | Journal article
OTHER-ID:

c351a729-9b01-40d6-9e70-a3ecd41a1aa4

Contributors: Burger; G.A.; Water; B. van de; Le Dévédec; S.E.; Beltman; J.B.
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Leiden University

Spatial and Temporal Modulation of Cell Instructive Cues in a Filamentous Supramolecular Biomaterial

ACS Applied Materials & Interfaces
2022-04-20 | Journal article
Contributors: Ciqing Tong; Joeri A. J. Wondergem; Marijn van den Brink; Markus C. Kwakernaak; Ying Chen; Marco M. R. M. Hendrix; Ilja K. Voets; Erik H. J. Danen; Sylvia Le Dévédec; Doris Heinrich et al.
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Hypocholesterolemic phospholipid transfer protein knockout mice exhibit a normal glucocorticoid response to food deprivation

American Journal of Translational Research
2022-01-01 | Journal article
OTHER-ID:

f052f1ef-045e-4fe2-8759-06acd06b732e

WOSUID:

000779770200006

Contributors: Hoekstra; M.; Liu; Q.; Zhang; Y.H.; Wel; E.J. van der; Le Devedec; S.E.; Eck; M. van
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Leiden University

Density-dependent migration characteristics of cancer cells driven by pseudopod coordination

2021-11-04 | Other
Contributors: Gerhard A. Burger; Bob van de Water; Sylvia E. Le Dévédec; Joost B. Beltman
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Crossref
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Peer review (9 reviews for 8 publications/grants)

Review activity for Biochimica et biophysica acta CR. (1)
Review activity for Biomedicine & pharmacotherapy. (1)
Review activity for Cellular and molecular life sciences (2)
Review activity for Cellular and molecular life sciences (1)
Review activity for Oncogene. (1)
Review activity for PloS one. (1)
Review activity for Scientific data. (1)
Review activity for World journal of surgical oncology (1)