Personal information

France

Activities

Employment (2)

CNRS Délégation Ile-de-France Ouest et Nord: Lille, Nord, FR

2018-10-01 to present | Chargé de recherche (Bonsai)
Employment
Source: Self-asserted source
antoine limasset

Université Libre de Bruxelles: Bruxelles, BE

2017-09-01 to 2018-09-01 | postdoc (EBE)
Employment
Source: Self-asserted source
antoine limasset

Education and qualifications (1)

Université de Rennes 1: Rennes, Bretagne, FR

2014-09-01 to 2017-07-12 | PhD (IRISA)
Education
Source: Self-asserted source
antoine limasset

Works (22)

Brisk: Exact resource-efficient dictionary fork-mers

2024-11-28 | Preprint
Contributors: Caleb Smith; Igor Martayan; Antoine Limasset; Yoann Dufresne
Source: check_circle
Crossref

Hyper-k-mers: efficient streamingk-mers representation

2024-11-07 | Preprint
Contributors: Igor Martayan; Lucas Robidou; Yoshihiro Shibuya; Antoine Limasset
Source: check_circle
Crossref

Conway–Bromage–Lyndon (CBL): an exact, dynamic representation of k-mer sets

Bioinformatics
2024-06-28 | Journal article
Contributors: Igor Martayan; Bastien Cazaux; Antoine Limasset; Camille Marchet
Source: check_circle
Crossref

K2R: Tinted de Bruijn Graphs implementation for efficient read extraction from sequencing datasets

2024-02-18 | Preprint
Contributors: Léa Vandamme; Bastien Cazaux; Antoine Limasset
Source: check_circle
Crossref

Automated evaluation of multiple sequence alignment methods to handle third generation sequencing errors

2023-10-05 | Preprint
Contributors: Coralie Rohmer; Hélène Touzet; Antoine Limasset
Source: check_circle
Crossref

Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching

2023-06-24 | Preprint
Contributors: Timothé Rouzé; Igor Martayan; Camille Marchet; Antoine Limasset
Source: check_circle
Crossref

Scalable sequence database search using Partitioned Aggregated Bloom Comb-Trees

2022-02-14 | Preprint
Contributors: Camille Marchet; Antoine Limasset
Source: check_circle
Crossref

Toward optimal fingerprint indexing for large scale genomics

2021-11-05 | Preprint
Contributors: Clément Agret; Bastien Cazaux; Antoine Limasset
Source: check_circle
Crossref

BLight: efficient exact associative structure for k-mers

Bioinformatics
2021-04-03 | Journal article
Contributors: Camille Marchet; Mael Kerbiriou; Antoine Limasset; Alfonso Valencia
Source: check_circle
Crossref

Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs

Bioinformatics
2020-03-01 | Journal article
Contributors: Antoine Limasset; Jean-François Flot; Pierre Peterlongo; Alfonso Valencia
Source: check_circle
Crossref

Read correction for non-uniform coverages

2019-06-25 | Other
Contributors: Camille Marchet; Yoann Dufresne; Antoine Limasset
Source: check_circle
Crossref

Toward perfect reads: short reads correction via mapping on compacted de Bruijn graphs

2019-02-28 | Other
Contributors: Antoine Limasset; Jean-François Flot; Pierre Peterlongo
Source: check_circle
Crossref

Efficient exact associative structure for sequencing data

2019-02-11 | Other
Contributors: Camille Marchet; Mael Kerbiriou; Antoine Limasset
Source: check_circle
Crossref

ELECTOR: Evaluator for long reads correction methods

2019-01-07 | Other
Contributors: Camille Marchet; Pierre Morisse; Lolita Lecompte; Arnaud Lefebvre; Thierry Lecroq; Pierre Peterlongo; Antoine Limasset
Source: check_circle
Crossref

A resource-frugal probabilistic dictionary and applications in bioinformatics

arXiv preprint arXiv:1703.00667
2017 | Journal article
Source: Self-asserted source
antoine limasset

Fast and scalable minimal perfect hashing for massive key sets

arXiv preprint arXiv:1702.03154
2017 | Journal article
Source: Self-asserted source
antoine limasset

Novel approaches for the exploitation of high throughput sequencing data

2017 | Dissertation or Thesis
Source: Self-asserted source
antoine limasset

Toward perfect reads

arXiv preprint arXiv:1711.03336
2017 | Journal article
Source: Self-asserted source
antoine limasset

A resource-frugal probabilistic dictionary and applications in (meta) genomics

arXiv preprint arXiv:1605.08319
2016 | Journal article
Source: Self-asserted source
antoine limasset

Compacting de Bruijn graphs from sequencing data quickly and in low memory

Bioinformatics
2016 | Journal article
Source: Self-asserted source
antoine limasset

Read mapping on de Bruijn graphs

BMC bioinformatics
2016 | Journal article
Source: Self-asserted source
antoine limasset

On the representation of de Bruijn graphs

International conference on Research in computational molecular biology
2014 | Conference paper
Source: Self-asserted source
antoine limasset

Peer review (11 reviews for 7 publications/grants)

Review activity for Algorithms for molecular biology (1)
Review activity for Computational and Structural Biotechnology Journal (1)
Review activity for GigaScience. (2)
Review activity for International journal of biological macromolecules. (1)
Review activity for Journal of Molecular Biology. (1)
Review activity for Nature communications (2)
Review activity for Nature methods. (3)