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Works (18)

Deep‐GB: A novel deep learning model for globular protein prediction using CNN‐BiLSTM architecture and enhanced PSSM with trisection strategy

IET Systems Biology
2024-12 | Journal article
Contributors: Sonia Zouari; Farman Ali; Atef Masmoudi; Sarah Abu Ghazalah; Wajdi Alghamdi; Faris A. Kateb; Nouf Ibrahim
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An ensemble computational model for prediction of clathrin protein by coupling machine learning with discrete cosine transform

Journal of Biomolecular Structure and Dynamics
2024-03-18 | Journal article
Contributors: Majdi Khalid; Farman Ali; Wajdi Alghamdi; Abdulrahman Alzahrani; Raed Alsini; Ahmed Alzahrani
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Identifying Neuropeptides via Evolutionary and Sequential Based Multi-Perspective Descriptors by Incorporation With Ensemble Classification Strategy

IEEE Access
2023 | Journal article
Contributors: Shahid Akbar; Heba G. Mohamed; Hashim Ali; Aamir Saeed; Aftab Ahmed Khan; Sarah Gul; Ashfaq Ahmad; Farman Ali; Yazeed Yasin Ghadi; Muhammad Assam
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Recent Advances in Machine Learning-Based Models for Prediction of Antiviral Peptides

Archives of Computational Methods in Engineering
2023-09 | Journal article
Contributors: Farman Ali; Harish Kumar; Wajdi Alghamdi; Faris A. Kateb; Fawaz Khaled Alarfaj
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AFP-SPTS: An Accurate Prediction of Antifreeze Proteins Using Sequential and Pseudo-Tri-Slicing Evolutionary Features with an Extremely Randomized Tree

Journal of Chemical Information and Modeling
2023-02-13 | Journal article
Contributors: Adnan Khan; Jamal Uddin; Farman Ali; Harish Kumar; Wajdi Alghamdi; Aftab Ahmad
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Comparative analysis of the existing methods for prediction of antifreeze proteins

Chemometrics and Intelligent Laboratory Systems
2023-01 | Journal article
Contributors: Adnan Khan; Jamal Uddin; Farman Ali; Ameen Banjar; Ali Daud
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iDBP-PBMD: A machine learning model for detection of DNA-binding proteins by extending compression techniques into evolutionary profile

Chemometrics and Intelligent Laboratory Systems
2022-12 | Journal article
Contributors: Ameen Banjar; Farman Ali; Omar Alghushairy; Ali Daud
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DBP-DeepCNN: Prediction of DNA-binding proteins using wavelet-based denoising and deep learning

Chemometrics and Intelligent Laboratory Systems
2022-10 | Journal article
Contributors: Farman Ali; Harish Kumar; Shruti Patil; Aftab Ahmed; Ameen Banjar; Ali Daud
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DBP-iDWT: Improving DNA-Binding Proteins Prediction Using Multi-Perspective Evolutionary Profile and Discrete Wavelet Transform

Computational Intelligence and Neuroscience
2022-09-28 | Journal article
Contributors: Farman Ali; Omar Barukab; Ajay B Gadicha; Shruti Patil; Omar Alghushairy; Akram Y. Sarhan; Xiaolong Zhou
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ACP-2DCNN: Deep learning-based model for improving prediction of anticancer peptides using two-dimensional convolutional neural network

Chemometrics and Intelligent Laboratory Systems
2022-07 | Journal article
Contributors: Ali Ghulam; Farman Ali; Rahu Sikander; Ashfaq Ahmad; Aftab Ahmed; Shruti Patil
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Target-DBPPred: An intelligent model for prediction of DNA-binding proteins using discrete wavelet transform based compression and light eXtreme gradient boosting

Computers in Biology and Medicine
2022-06 | Journal article
Contributors: Farman Ali; Harish Kumar; Shruti Patil; Ketan Kotecha; Ameen Banjar; Ali Daud
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Deep-PCL: A deep learning model for prediction of cancerlectins and non cancerlectins using optimized integrated features

Chemometrics and Intelligent Laboratory Systems
2022-02 | Journal article
Contributors: Adnan; Farman Ali; Ali Ghulam; Zulfikar Ahmed Maher; Muhammad Asif Khan; Sher Afzal Khan; Wang Hongya
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AFP-CMBPred: Computational identification of antifreeze proteins by extending consensus sequences into multi-blocks evolutionary information

Computers in Biology and Medicine
2021-12 | Journal article
Contributors: Farman Ali; Shahid Akbar; Ali Ghulam; Zulfikar Ahmed Maher; Ahsanullah Unar; Dhani Bux Talpur
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DBP-GAPred: An intelligent method for prediction of DNA-binding proteins types by enhanced evolutionary profile features with ensemble learning

Journal of Bioinformatics and Computational Biology
2021-08-21 | Journal article
Contributors: Omar Barukab; Farman Ali; Sher Afzal Khan
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Brain tumor classification for MR images using transfer learning and fine-tuning

Computerized Medical Imaging and Graphics
2019-07 | Journal article
Contributors: Zar Nawab Khan Swati; Qinghua Zhao; Muhammad Kabir; Farman Ali; Zakir Ali; Saeed Ahmed; Jianfeng Lu
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DP-BINDER: machine learning model for prediction of DNA-binding proteins by fusing evolutionary and physicochemical information

Journal of Computer-Aided Molecular Design
2019-07-23 | Journal article
Contributors: Farman Ali; Saeed Ahmed; Zar Nawab Khan Swati; Shahid Akbar
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iRSpot-SPI: Deep learning-based recombination spots prediction by incorporating secondary sequence information coupled with physio-chemical properties via Chou's 5-step rule and pseudo components

Chemometrics and Intelligent Laboratory Systems
2019-06 | Journal article
Contributors: Zaheer Ullah Khan; Farman Ali; Izhar Ahmed Khan; Yasir Hussain; Dechang Pi
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Prediction of membrane protein types by exploring local discriminative information from evolutionary profiles

Analytical Biochemistry
2019-01 | Journal article
Contributors: Muhammad Kabir; Muhammad Arif; Farman Ali; Saeed Ahmad; Zar Nawab Khan Swati; Dong-Jun Yu
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Peer review (6 reviews for 5 publications/grants)

Review activity for Computers in biology and medicine. (2)
Review activity for Gene. (1)
Review activity for iScience. (1)
Review activity for Journal of chemical information and modeling. (1)
Review activity for Medical & biological engineering & computing. (1)