Personal information

Computational biology, Multimodal data integration, Single-cell biology
United States

Activities

Employment (4)

Regeneron Pharmaceuticals: NY, NY, US

2023-06-26 to present | Sr. Scientist (Molecular Profiling & Data Science)
Employment
Source: Self-asserted source
Cody Heiser

Asuragen: Austin, TX, US

2018-05-01 to 2018-07-27 | Scientist I (Diagnostics Development)
Employment
Source: Self-asserted source
Cody Heiser

Asuragen: Austin, TX, US

2017-06-01 to 2018-05-01 | Senior Assistant Scientist (Diagnostics Development)
Employment
Source: Self-asserted source
Cody Heiser

Asuragen: Austin, TX, US

2016-09-01 to 2017-06-01 | Assistant Scientist II (Diagnostics Development)
Employment
Source: Self-asserted source
Cody Heiser

Education and qualifications (2)

Vanderbilt University: Nashville, TN, US

2018-08-14 to 2023-03-10 | Ph.D. (Chemical & Physical Biology)
Education
Source: Self-asserted source
Cody Heiser

University of Texas at Austin: Austin, TX, US

2012-08-24 to 2016-05-14 | B.S. (Biomedical Engineering)
Education
Source: Self-asserted source
Cody Heiser

Works (16)

Consensus tissue domain detection in spatial omics data using multiplex image labeling with regional morphology (MILWRM)

Communications Biology
2024-10-30 | Journal article
Contributors: Harsimran Kaur; Cody N. Heiser; Eliot T. McKinley; Lissa Ventura-Antunes; Coleman R. Harris; Joseph T. Roland; Melissa A. Farrow; Hilary J. Selden; Ellie L. Pingry; John F. Moore et al.
Source: check_circle
Crossref

Single-cell transcriptomics reveals heterogenous thymic dendritic cell subsets with distinct functions and requirements for thymocyte-regulated crosstalk

2023-12-19 | Preprint
Contributors: Jayashree Srinivasan; Bryan R. Helm; Yilin Yang; Colin Moore; John F. Moore; Aparna Calindi; Hilary J Selden; Cody N. Heiser; Qi Liu; Ken S. Lau et al.
Source: check_circle
Crossref

GammaGateR: semi-automated marker gating for single-cell multiplexed imaging

2023-09-23 | Preprint
Contributors: Jiangmei Xiong; Harsimran Kaur; Cody N Heiser; Eliot T McKinley; Joseph T Roland; Robert J Coffey; Martha J Shrubsole; Julia Wrobel; Siyuan Ma; Ken S Lau et al.
Source: check_circle
Crossref

Molecular cartography uncovers evolutionary and microenvironmental dynamics in sporadic colorectal tumors

2023-03-12 | Preprint
Contributors: Cody N. Heiser; Alan J. Simmons; Frank Revetta; Eliot T. McKinley; Marisol A. Ramirez-Solano; Jiawei Wang; Justin Shao; Gregory D. Ayers; Yu Wang; Sarah E. Glass et al.
Source: check_circle
Crossref

Consensus tissue domain detection in spatial multi-omics data using MILWRM

2023-02-03 | Preprint
Contributors: Harsimran Kaur; Cody N. Heiser; Eliot T. McKinley; Lissa Ventura-Antunes; Coleman R. Harris; Joseph T. Roland; Martha J. Shrubsole; Robert J. Coffey; Ken S. Lau; Simon Vandekar
Source: check_circle
Crossref

Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer

Cell
2023-01 | Journal article
Contributors: Jia-Ren Lin; Shu Wang; Shannon Coy; Yu-An Chen; Clarence Yapp; Madison Tyler; Maulik K. Nariya; Cody N. Heiser; Ken S. Lau; Sandro Santagata et al.
Source: check_circle
Crossref

A contamination focused approach for optimizing the single-cell RNA-seq experiment

2022-10-27 | Preprint
Contributors: Deronisha Arceneaux; Zhengyi Chen; Alan J. Simmons; Cody N. Heiser; Austin N. Southard-Smith; Michael J. Brenan; Yilin Yang; Bob Chen; Yanwen Xu; Eunyoung Choi et al.
Source: check_circle
Crossref

Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps

Cell
2021-12 | Journal article
Contributors: Bob Chen; Cherie’ R. Scurrah; Eliot T. McKinley; Alan J. Simmons; Marisol A. Ramirez-Solano; Xiangzhu Zhu; Nicholas O. Markham; Cody N. Heiser; Paige N. Vega; Andrea Rolong et al.
Source: check_circle
Crossref

Automated quality control and cell identification of droplet-based single-cell data using dropkick

Genome Research
2021-10-09 | Journal article
Contributors: Cody N. Heiser; Victoria M. Wang; Bob Chen; Jacob J. Hughey; Ken S. Lau
Source: check_circle
Crossref

Processing single-cell RNA-seq data for dimension reduction-based analyses using open-source tools

STAR Protocols
2021-06 | Journal article
Contributors: Bob Chen; Marisol A. Ramirez-Solano; Cody N. Heiser; Qi Liu; Ken S. Lau
Source: check_circle
Crossref

Multiplexed 3D atlas of state transitions and immune interactions in colorectal cancer

2021-04-02 | Preprint
Contributors: Jia-Ren Lin; Shu Wang; Shannon Coy; Yu-An Chen; Clarence Yapp; Madison Tyler; Maulik K. Nariya; Cody N. Heiser; Ken S. Lau; Sandro Santagata et al.
Source: check_circle
Crossref

A Quantitative Framework for Evaluating Single-Cell Data Structure Preservation by Dimensionality Reduction Techniques

Cell Reports
2020 | Journal article
EID:

2-s2.0-85084111162

Part of ISSN: 22111247
Contributors: Heiser, C.N.; Lau, K.S.
Source: Self-asserted source
Cody Heiser via Scopus - Elsevier

Coregulator sin3a promotes postnatal murine b-cell fitness by regulating genes in ca<sup>21</sup> homeostasis, cell survival, vesicle biosynthesis, glucose metabolism, and stress response

Diabetes
2020 | Journal article
EID:

2-s2.0-85084962555

Part of ISSN: 1939327X 00121797
Contributors: Yang, X.; Graff, S.M.; Heiser, C.N.; Ho, K.-H.; Chen, B.; Simmons, A.J.; Southard-Smith, A.N.; David, G.; Jacobson, D.A.; Kaverina, I. et al.
Source: Self-asserted source
Cody Heiser via Scopus - Elsevier

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell
2020 | Journal article
EID:

2-s2.0-85083116634

Part of ISSN: 10974172 00928674
Contributors: Rozenblatt-Rosen, O.; Regev, A.; Oberdoerffer, P.; Nawy, T.; Hupalowska, A.; Rood, J.E.; Ashenberg, O.; Cerami, E.; Coffey, R.J.; Demir, E. et al.
Source: Self-asserted source
Cody Heiser via Scopus - Elsevier

Automated quality control and cell identification of droplet-based single-cell data using dropkick

2020-10-09 | Preprint
Contributors: Cody N. Heiser; Victoria M. Wang; Bob Chen; Jacob J. Hughey; Ken S. Lau
Source: check_circle
Crossref

A quantitative framework for evaluating single-cell data structure preservation by dimensionality reduction techniques

2019-06-27 | Other
Contributors: Cody N. Heiser; Ken S. Lau
Source: check_circle
Crossref