Personal information

ontologies, semantic web, ontology repository, semantic annotation, knowledge graphs
France

Biography

Dr. Clement Jonquet, PhD in Informatics, is senior researcher at INRAE in the MISTEA research unit and associate researcher at University of Montpellier in the LIRMM laboratory. He is a former postdoc (3 years) & visiting scholar (3 years) from Stanford BMIR. He has 16 years of experience in ontologies and semantic Web research applied to biomedicine and agronomy. He works on the design and development of ontology repositories, ontology-based services and FAIR semantic artefacts as the PI or Co-PI of several past or ongoing projects such as ANR D2KAB (www.d2kab.org) or HEU FAIR-IMPACT (www.fair-impact.eu) or the OntoPortal Alliance (https://ontoportal.org). Since 2015, he leads the AgroPortal initiative to build a reference vocabulary and ontology repository for agronomy, food and plant sciences. Dr. Jonquet is the (co)author of 130 publications or communications cumulating more than 3890 citations, including 28 international journals in multiple domains.

Activities

Employment (9)

University of Montpellier: Montpellier, FR

2022-01-01 to present | Associate Researcher (LIRMM)
Employment
Source: Self-asserted source
Clement Jonquet

National Research Institute for Agriculture, Food and Environment: Montpellier, FR

2022-01-01 to present | Senior Researcher (MISTEA)
Employment
Source: Self-asserted source
Clement Jonquet

National Research Institute for Agriculture, Food and Environment: Montpellier, FR

2020-09-01 to 2021-12-31 | Associate Research Scientist (MISTEA)
Employment
Source: Self-asserted source
Clement Jonquet

University of Montpellier: Montpellier, FR

2019-05-28 to 2021-12-31 | Associate Professor (LIRMM)
Employment
Source: Self-asserted source
Clement Jonquet

Inria Centre de Recherche Sophia Antipolis Méditerranée: Sophia Antipolis, FR

2018-09-01 to 2019-08-31 | Visiting Scholar (Wimmics)
Employment
Source: Self-asserted source
Clement Jonquet

Université de Montpellier: Montpellier, FR

2010-09-01 to 2019-05-28 | Assistant Professor (LIRMM)
Employment
Source: Self-asserted source
Clement Jonquet

Stanford University: Stanford, CA, US

2015-09-01 to 2018-08-31 | Visiting Scholar (BMIR)
Employment
Source: Self-asserted source
Clement Jonquet

Stanford University: Stanford, CA, US

2007-01-09 to 2010-08-31 | Postdoctoral scholar (BMIR)
Employment
Source: Self-asserted source
Clement Jonquet

Université Paul-Valéry Montpellier: Montpellier, Languedoc-Roussillon, FR

2006-09-01 to 2007-08-31 | Lecturer (MIAP)
Employment
Source: Self-asserted source
Clement Jonquet

Education and qualifications (2)

University of Montpellier: Montpellier, Languedoc-Roussillon, FR

2019-05-20 to 2019-05-20 | Habilitation to conduct research (HDR) (Computer Science)
Qualification
Source: Self-asserted source
Clement Jonquet

Université Montpellier 2: Montpellier, FR

2003-09-01 to 2006-11-16 | PhD (Computer Science)
Education
Source: Self-asserted source
Clement Jonquet

Funding (5)

Data to Knowledge in Agriculture and Biodiversity – D2KAB

2019-05-28 to 2023-05-27 | Grant
National Agency for Research (Paris, FR)
GRANT_NUMBER: ANR-18-CE23-0017
Source: Self-asserted source
Clement Jonquet via DimensionsWizard

Semantic Indexing of French Biomedical Data Resources - mobility

2016-09 to 2019-08 | Grant
H2020 Marie Skłodowska-Curie Actions (Brussels, BE)
GRANT_NUMBER: 701771
Source: Self-asserted source
Clement Jonquet
grade
Preferred source (of 2)‎

Practice-based evidences for actioning Knowledge in Pharmacogenomics – PractiKPharma

2015-09-28 to 2019-03-27 | Grant
National Agency for Research (Paris, FR)
GRANT_NUMBER: ANR-15-CE23-0028
Source: Self-asserted source
Clement Jonquet via DimensionsWizard

SIFR

2012-03 to 2017-02 | Grant
Agence Nationale de la Recherche (Paris, FR)
GRANT_NUMBER: ANR-12-JS02-0010
Source: Self-asserted source
Clement Jonquet

National Center for Biomedical Ontology

2005-09-23 to 2017-07-31 | Grant
National Human Genome Research Institute (Bethesda, US)
GRANT_NUMBER: U54HG004028
Source: Self-asserted source
Clement Jonquet via DimensionsWizard

Works (12)

Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology

2023 | Book chapter
Contributors: Clement Jonquet; John Graybeal; Syphax Bouazzouni; Michael Dorf; Nicola Fiore; Xeni Kechagioglou; Timothy Redmond; Ilaria Rosati; Alex Skrenchuk; Jennifer L. Vendetti et al.
Source: check_circle
Crossref

Classification of Linking Problem Types for Linking Semantic Data

2023-09-11 | Book chapter
Contributors: Raphaël Conde Salazar; Clément Jonquet; Danai Symeonidou
Source: check_circle
Crossref

Correction: 39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition

Data Science Journal
2023-02-14 | Journal article
Contributors: Caterina Caracciolo; Sophie Aubin; Clement Jonquet; Emna Amdouni; Romain David; Leyla Garcia; Brandon Whitehead; Catherine Roussey; Armando Stellato; Ferdinando Villa
Source: check_circle
Crossref

FAIR or FAIRer? An Integrated Quantitative FAIRness Assessment Grid for Semantic Resources and Ontologies

2022 | Book chapter
Contributors: Emna Amdouni; Clement Jonquet
Source: check_circle
Crossref

O’FAIRe: Ontology FAIRness Evaluator in the AgroPortal Semantic Resource Repository

2022 | Book chapter
Contributors: Emna Amdouni; Syphax Bouazzouni; Clement Jonquet
Source: check_circle
Crossref

Semantic Description of Plant Phenological Development Stages, Starting with Grapevine

2021 | Book chapter
Contributors: Catherine Roussey; Xavier Delpuech; Florence Amardeilh; Stephan Bernard; Clement Jonquet
Source: check_circle
Crossref

Analysis of Term Reuse, Term Overlap and Extracted Mappings Across AgroPortal Semantic Resources

2020 | Book chapter
Contributors: Amir Laadhar; Elcio Abrahão; Clement Jonquet
Source: check_circle
Crossref

FAIRness Literacy: The Achilles’ Heel of Applying FAIR Principles

Data Science Journal
2020-08-11 | Journal article
Contributors: Romain David; Laurence Mabile; Alison Specht; Sarah Stryeck; Mogens Thomsen; Mohamed Yahia; Clement Jonquet; Laurent Dollé; Daniel Jacob; Daniele Bailo et al.
Source: check_circle
Crossref

Harnessing the Power of Unified Metadata in an Ontology Repository: The Case of AgroPortal

Journal on Data Semantics
2018-12-29 | Journal article
Contributors: Clement Jonquet; Anne Toulet; Biswanath Dutta; Vincent Emonet
Source: check_circle
Crossref

AgroPortal: A vocabulary and ontology repository for agronomy

Computers and Electronics in Agriculture
2018-01 | Journal article
Contributors: Clément Jonquet; Anne Toulet; Elizabeth Arnaud; Sophie Aubin; Esther Dzalé Yeumo; Vincent Emonet; John Graybeal; Marie-Angélique Laporte; Mark A. Musen; Valeria Pesce et al.
Source: check_circle
Crossref

Developing data interoperability using standards: A wheat community use case [version 2; referees: 2 approved]

2017-12-06 | Journal article
Part of ISSN: 2046-1402
Contributors: Esther Dzale Yeumo; Michael Alaux; Elizabeth Arnaud; Sophie Aubin; Ute Baumann; Patrice Buche; Laurel Cooper; Hanna Ćwiek-Kupczyńska; Robert P. Davey; Richard Allan Fulss et al.
Source: check_circle
F1000

Developing data interoperability using standards: A wheat community use case [version 1; referees: awaiting peer review]

2017-10-16 | Journal article
Part of ISSN: 2046-1402
Contributors: Esther Dzale Yeumo; Michael Alaux; Elizabeth Arnaud; Sophie Aubin; Ute Baumann; Patrice Buche; Laurel Cooper; Hanna Ćwiek-Kupczyńska; Robert P. Davey; Richard Allan Fulss et al.
Source: check_circle
F1000
grade
Preferred source (of 2)‎