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Activities

Employment (1)

Massachusetts Institute of Technology: Cambridge, MA, US

2016-07-01 to present | Assistant Professor (Chemistry)
Employment
Source: Self-asserted source
Bin Zhang

Education and qualifications (3)

Rice University: Houston, TX, US

2013-05-01 to 2016 | Postdoctoral Fellow (Chemistry)
Education
Source: Self-asserted source
Bin Zhang

California Institute of Technology: Pasadena, CA, US

2007-09-01 to 2013 | PhD (Chemistry)
Education
Source: Self-asserted source
Bin Zhang

University of Science and Technology of China: Hefei, Anhui, CN

2003-09-01 to 2007 (Chemical Physics)
Education
Source: Self-asserted source
Bin Zhang

Research resources (2)

Near-atomistic modeling of chromatin organization in vivo

Scaling Graph Neural Networks to Large Proteins

Works (50 of 81)

Items per page:
Page 1 of 2

Scaling Graph Neural Networks to Large Proteins

Journal of Chemical Theory and Computation
2025-02-06 | Journal article
Contributors: Justin Airas; Bin Zhang
Source: check_circle
Crossref

ChromoGen: Diffusion model predicts single-cell chromatin conformations

Science Advances
2025-01-31 | Journal article | Author
Contributors: Bin Zhang; Greg Schuette; Zhuohan Lao
Source: check_circle
AAAS - Science
grade
Preferred source (of 2)‎

Protein Language Model Identifies Disordered, Conserved Motifs Driving Phase Separation

2024-12-13 | Preprint
Contributors: Yumeng Zhang; Jared Zheng; Bin Zhang
Source: check_circle
Crossref

Nonspecific Yet Selective Interactions Contribute to Small Molecule Condensate Binding

Journal of Chemical Theory and Computation
2024-11-26 | Journal article
Contributors: Cong Wang; Henry R. Kilgore; Andrew P. Latham; Bin Zhang
Source: check_circle
Crossref

Nucleosome condensate and linker DNA alter chromatin folding pathways and rates

2024-11-16 | Preprint
Contributors: Yunrui Qiu; Shuming Liu; Xingcheng Lin; Ilona Christy Unarta; Xuhui Huang; Bin Zhang
Source: check_circle
Crossref

OpenNucleome for high-resolution nuclear structural and dynamical modeling

eLife
2024-08-15 | Journal article
Contributors: Zhuohan Lao; Kartik D Kamat; Zhongling Jiang; Bin Zhang
Source: check_circle
Crossref

OpenNucleome for high-resolution nuclear structural and dynamical modeling

eLife
2024-08-15 | Journal article
Contributors: Zhuohan Lao; Kartik D Kamat; Zhongling Jiang; Bin Zhang
Source: check_circle
Crossref

Non-specific yet selective interactions contribute to small molecule condensate partitioning behavior

2024-08-13 | Preprint
Contributors: Bin Zhang; Cong Wang; Henry Kilgore; Andrew Latham
Source: check_circle
Crossref

Preserving condensate structure and composition by lowering sequence complexity

Biophysical Journal
2024-07 | Journal article
Contributors: Amogh Sood; Bin Zhang
Source: check_circle
Crossref

ChromoGen: Diffusion model predicts single-cell chromatin conformations

2024-07-16 | Preprint
Contributors: Bin Zhang; Greg Schuette; Zhuohan Lao
Source: check_circle
Crossref

Synchronous assembly of peptide anisosome

2024-07-10 | Preprint
Contributors: Laicheng Zhou; Longcheng Zhu; Cong Wang; Tengyan Xu; Jing Wang; Bin Zhang; Xin Zhang; Huaimin Wang
Source: check_circle
Crossref

OpenNucleome for high resolution nuclear structural and dynamical modeling

2024-07-01 | Preprint
Contributors: Zhuohan Lao; Kartik Kamat; Zhongling Jiang; Bin Zhang
Source: check_circle
Crossref

Dynamical phase transition in models that couple chromatin folding with histone modifications

Physical Review E
2024-05-24 | Journal article
Contributors: Amogh Sood; Greg Schuette; Bin Zhang
Source: check_circle
Crossref

Microphase Separation Produces Interfacial Environment within Diblock Biomolecular Condensates

2024-05-07 | Preprint
Contributors: Andrew P. Latham; Longchen Zhu; Dina A. Sharon; Songtao Ye; Adam P. Willard; Xin Zhang; Bin Zhang
Source: check_circle
Crossref

Microphase Separation Produces Interfacial Environment within Diblock Biomolecular Condensates

2024-05-07 | Preprint
Contributors: Andrew P. Latham; Longchen Zhu; Dina A. Sharon; Songtao Ye; Adam P. Willard; Xin Zhang; Bin Zhang
Source: check_circle
Crossref

Micropolarity governs the structural organization of biomolecular condensates

Nature Chemical Biology
2024-04 | Journal article
Contributors: Songtao Ye; Andrew P. Latham; Yuqi Tang; Chia-Heng Hsiung; Junlin Chen; Feng Luo; Yu Liu; Bin Zhang; Xin Zhang
Source: check_circle
Crossref

Microphase Separation Produces Interfacial Environment within Diblock Biomolecular Condensates

2024-04-10 | Preprint
Contributors: Andrew P. Latham; Longchen Zhu; Dina A. Sharon; Songtao Ye; Adam P. Willard; Xin Zhang; Bin Zhang
Source: check_circle
Crossref

Assessing the impact of Brd2 depletion on chromatin compartmentalization

2024-03-06 | Preprint
Contributors: Advait Athreya; Liangqi Xie; Robert Tjian; Bin Zhang; Zhe J. Liu
Source: check_circle
Crossref

OpenNucleome for high resolution nuclear structural and dynamical modeling

2024-02-08 | Preprint
Contributors: Zhuohan Lao; Kartik Kamat; Zhongling Jiang; Bin Zhang
Source: check_circle
Crossref

Explicit ion modeling predicts physicochemical interactions for chromatin organization

eLife
2024-01-30 | Journal article
Contributors: Xingcheng Lin; Bin Zhang
Source: check_circle
Crossref

Explicit ion modeling predicts physicochemical interactions for chromatin organization

eLife
2024-01-30 | Journal article
Contributors: Xingcheng Lin; Bin Zhang
Source: check_circle
Crossref

Explicit Ion Modeling Predicts Physicochemical Interactions for Chromatin Organization

2024-01-10 | Preprint
Contributors: Xingcheng Lin; Bin Zhang
Source: check_circle
Crossref

Transferable Implicit Solvation via Contrastive Learning of Graph Neural Networks

ACS Central Science
2023-12-27 | Journal article
Contributors: Justin Airas; Xinqiang Ding; Bin Zhang
Source: check_circle
Crossref

Electrostatic encoding of genome organization principles within single native nucleosomes

2023-12-09 | Preprint
Contributors: Sangwoo Park; Advait Athreya; Gustavo Ezequiel Carrizo; Nils A. Benning; Michelle M. Mitchener; Natarajan V. Bhanu; Benjamin A. Garcia; Bin Zhang; Tom W. Muir; Erika L. Pearce et al.
Source: check_circle
Crossref

Preserving condensate structure and composition by lowering sequence complexity

2023-11-29 | Preprint
Contributors: Amogh Sood; Bin Zhang
Source: check_circle
Crossref

Frustrated Microphase Separation Produces Interfacial Environment within Biological Condensates

2023-11-21 | Preprint
Contributors: Andrew P. Latham; Longchen Zhu; Dina A. Sharon; Songtao Ye; Adam P. Willard; Xin Zhang; Bin Zhang
Source: check_circle
Crossref

OpenNucleome for high resolution nuclear structural and dynamical modeling

2023-10-18 | Preprint
Contributors: Zhuohan Lao; Kartik Kamat; Zhongling Jiang; Bin Zhang
Source: check_circle
Crossref

Efficient Hi-C inversion facilitates chromatin folding mechanism discovery and structure prediction

Biophysical Journal
2023-09 | Journal article
Contributors: Greg Schuette; Xinqiang Ding; Bin Zhang
Source: check_circle
Crossref

Transferable Coarse Graining via Contrastive Learning of Graph Neural Networks

2023-09-12 | Preprint
Contributors: Justin Airas; Xinqiang Ding; Bin Zhang
Source: check_circle
Crossref

OpenABC enables flexible, simplified, and efficient GPU accelerated simulations of biomolecular condensates

PLOS Computational Biology
2023-09-11 | Journal article
Contributors: Shuming Liu; Guanghong Wei; Cong Wang; Andrew P. Latham; Xinqiang Ding; Bin Zhang
Source: check_circle
Crossref

Explicit Ion Modeling Predicts Physicochemical Interactions for Chromatin Organization

2023-08-21 | Preprint
Contributors: Xingcheng Lin; Bin Zhang
Source: check_circle
Crossref

Explicit Ion Modeling Predicts Physicochemical Interactions for Chromatin Organization

2023-05-18 | Preprint
Contributors: Xingcheng Lin; Bin Zhang
Source: check_circle
Crossref

Compartmentalization with nuclear landmarks yields random, yet precise, genome organization

Biophysical Journal
2023-04 | Journal article
Contributors: Kartik Kamat; Zhuohan Lao; Yifeng Qi; Yuchuan Wang; Jian Ma; Bin Zhang
Source: check_circle
Crossref

OpenABC Enables Flexible, Simplified, and Efficient GPU Accelerated Simulations of Biomolecular Condensates

2023-04-21 | Preprint
Contributors: Shuming Liu; Cong Wang; Andrew Latham; Xinqiang Ding; Bin Zhang
Source: check_circle
Crossref

Microphase Separation Produces Interfacial Environment within Diblock Biomolecular Condensates

2023-04-02 | Preprint
Contributors: Andrew P. Latham; Longchen Zhu; Dina A. Sharon; Songtao Ye; Adam P. Willard; Xin Zhang; Bin Zhang
Source: check_circle
Crossref

Micropolarity governs the structural organization of biomolecular condensates

2023-03-30 | Preprint
Contributors: Songtao Ye; Andrew P. Latham; Yuqi Tang; Chia-Heng Hsiung; Junlin Chen; Feng Luo; Yu Liu; Bin Zhang; Xin Zhang
Source: check_circle
Crossref

Efficient Hi-C inversion facilitates chromatin folding mechanism discovery and structure prediction

2023-03-21 | Preprint
Contributors: Greg Schuette; Xinqiang Ding; Bin Zhang
Source: check_circle
Crossref

Single-molecule acceptor rise time (smART) FRET for nanoscale distance sensitivity

2023-03-16 | Preprint
Contributors: Jiajia Guo; Xuyan Chen; Premashis Manna; Xingcheng Lin; Madelyn N. Scott; Wei Jia Chen; Mikaila Hoffman; Bin Zhang; Gabriela S. Schlau-Cohen
Source: check_circle
Crossref

Molecular determinants for the layering and coarsening of biological condensates

Aggregate
2022-12 | Journal article
Contributors: Andrew P. Latham; Bin Zhang
Source: check_circle
Crossref

Coupling chromatin folding with histone modifications reveals dynamical asymmetry in the epigenetic landscape

2022-11-02 | Preprint
Contributors: Amogh Sood; Greg Schuette; Bin Zhang
Source: check_circle
Crossref

Contrastive Learning of Coarse-Grained Force Fields

Journal of Chemical Theory and Computation
2022-10-11 | Journal article
Contributors: Xinqiang Ding; Bin Zhang
Source: check_circle
Crossref

Chromatin fiber breaks into clutches under tension and crowding

Nucleic Acids Research
2022-09-23 | Journal article
Contributors: Shuming Liu; Xingcheng Lin; Bin Zhang
Source: check_circle
Crossref

Phase Separation and Correlated Motions in Motorized Genome

The Journal of Physical Chemistry B
2022-08-04 | Journal article
Contributors: Zhongling Jiang; Yifeng Qi; Kartik Kamat; Bin Zhang
Source: check_circle
Crossref

Ligand-induced transmembrane conformational coupling in monomeric EGFR

Nature Communications
2022-07-06 | Journal article
Contributors: Shwetha Srinivasan; Raju Regmi; Xingcheng Lin; Courtney A. Dreyer; Xuyan Chen; Steven D. Quinn; Wei He; Matthew A. Coleman; Kermit L. Carraway, III; Bin Zhang et al.
Source: check_circle
Crossref

On the stability and layered organization of protein-DNA condensates

Biophysical Journal
2022-05 | Journal article
Contributors: Andrew P. Latham; Bin Zhang
Source: check_circle
Crossref

Phase Separation and Correlated Motions in Motorized Genome

2022-05-10 | Preprint
Contributors: Zhongling Jiang; Yifeng Qi; Kartik Kamat; Bin Zhang
Source: check_circle
Crossref

Unifying coarse-grained force fields for folded and disordered proteins

Current Opinion in Structural Biology
2022-02 | Journal article
Contributors: Andrew P. Latham; Bin Zhang
Source: check_circle
Crossref

Chromatin network retards nucleoli coalescence

Nature Communications
2021-11-24 | Journal article
Contributors: Yifeng Qi; Bin Zhang
Source: check_circle
Crossref

Chromatin fiber breaks into clutches under tension and crowding

2021-11-18 | Other
Contributors: Shuming Liu; Xingcheng Lin; Bin Zhang
Source: check_circle
Crossref

Genome Compartmentalization with Nuclear Landmarks: Random yet Precise

2021-11-13 | Other
Contributors: Kartik Kamat; Yifeng Qi; Yuchuan Wang; Jian Ma; Bin Zhang
Source: check_circle
Crossref
Items per page:
Page 1 of 2

Peer review (16 reviews for 6 publications/grants)

Review activity for Biochemistry. (1)
Review activity for Chemical reviews. (1)
Review activity for Genome biology. (1)
Review activity for Journal of chemical theory and computation : (3)
Review activity for Macromolecules. (2)
Review activity for The journal of physical chemistry. (8)