Personal information

Verified email domains

chromatin, simulation, genome, computer science
United States, China

Activities

Employment (2)

New York University: New York, New York, US

2020-02-24 to present | Postdoctoral Associate (Department of Chemistry)
Employment
Source: Self-asserted source
Zilong Li

Louisiana Tech University: Ruston, LA, US

2016-06-01 to 2020-03-07 | Graduate Assistant (College of Engineering and Science)
Employment
Source: Self-asserted source
Zilong Li

Education and qualifications (4)

Louisiana Tech University: Ruston, LA, US

2016-06-01 to 2020-03-07 | Ph. D. degree in Computational Analysis and Modeling (College of Engineering and Science)
Education
Source: Self-asserted source
Zilong Li

Louisiana Tech University: Ruston, LA, US

2018-09-01 to 2019-05-18 | Master's degree in Mathematics (College of Engineering and Science)
Education
Source: Self-asserted source
Zilong Li

Louisiana Tech University: Ruston, LA, US

2013-12-01 to 2015-11-21 | Master's degree in Computer Science (College of Engineering and Science)
Education
Source: Self-asserted source
Zilong Li

Shanghai Jiao Tong University: Shanghai, CN

2008-09-01 to 2012-08-01 | Bachelor degree in Electrical and Computer Engineering (Engineering)
Education
Source: Self-asserted source
Zilong Li

Professional activities (2)

Faculty Opinions: London, GB

2023-01-04 to present | Associate Faculty Member
Invited position
Source: check_circle
Faculty Opinions

Biophysical Society: Rockville, Maryland, US

2016-10-03 to 2020-12-31 | Student Member
Membership
Source: Self-asserted source
Zilong Li

Works (16)

Hi-BDiSCO: folding 3D mesoscale genome structures from Hi-C data using brownian dynamics

Nucleic Acids Research
2024-01-25 | Journal article
Contributors: Zilong Li; Tamar Schlick
Source: check_circle
Crossref

Techniques for and challenges in reconstructing 3D genome structures from 2D chromosome conformation capture data

Current Opinion in Cell Biology
2023-08 | Journal article
Part of ISSN: 0955-0674
Contributors: Zilong Li; Stephanie Portillo-Ledesma; Tamar Schlick
Source: Self-asserted source
Zilong Li

Genome modeling: From chromatin fibers to genes

Current Opinion in Structural Biology
2023-02 | Journal article
Part of ISSN: 0959-440X
Contributors: Stephanie Portillo-Ledesma; Zilong Li; Tamar Schlick
Source: Self-asserted source
Zilong Li

Brownian Dynamics Simulations of Mesoscale Chromatin Fibers

Biophysical Journal
2022-09 | Journal article | Software, Writing - original draft, Formal analysis, Methodology, Validation
Part of ISSN: 0006-3495
Contributors: Zilong Li
Source: Self-asserted source
Zilong Li

Some Mathematical Problems Related to the Rubik’s Snake

Journal of Mechanisms and Robotics
2021-02-01 | Journal article
Part of ISSN: 1942-4302
Part of ISSN: 1942-4310
Source: Self-asserted source
Zilong Li

ANERGY TO SYNERGY-THE ENERGY FUELING THE RXCOVEA FRAMEWORK

International Journal for Multiscale Computational Engineering
2020 | Journal article
Part of ISSN: 1543-1649
Contributors: Zilong Li
Source: Self-asserted source
Zilong Li

Genome Dashboards: A Framework for Unifying Informatics and Structure

Biophysical Journal
2020-02 | Journal article
Part of ISSN: 0006-3495
Source: Self-asserted source
Zilong Li

Computational Design and Analysis of a Magic Snake

Journal of Mechanisms and Robotics
2020-02-14 | Journal article
Part of ISSN: 1942-4302
Part of ISSN: 1942-4310
Source: Self-asserted source
Zilong Li

Genome dashboards: Framework and Examples

Source: Self-asserted source
Zilong Li
grade
Preferred source (of 3)‎

TMB Library of Nucleosome Simulations.

Journal of chemical information and modeling
2019-09-24 | Journal article
Source: Self-asserted source
Zilong Li

TMB-iBIOMES: An iBIOMES-Lite Database of Nucleosome Trajectories and Meta-Analysis

[]
2019-03-04 | Preprint
Source: Self-asserted source
Zilong Li

GDash: A Genomics Dashboard Integrating Modeling and Informatics

Biophysical Journal
2019-02 | Journal article
Part of ISSN: 0006-3495
Source: Self-asserted source
Zilong Li

TMB-iBIOMES: A Database of All Atom Simulation and Analysis for Nucleosomes

Biophysical Journal
2019-02 | Journal article
Part of ISSN: 0006-3495
Source: Self-asserted source
Zilong Li

G-Dash: A Genome Dashboard Integrating Modeling and Informatics

[]
2018-12-19 | Preprint
Source: Self-asserted source
Zilong Li

Interactive Chromatin Modeling with Genome Browser

Biophysical Journal
2017-02 | Journal article
Part of ISSN: 0006-3495
Source: Self-asserted source
Zilong Li

Molecular Dynamics Simulation Workflow for Nucleosome Studies

Biophysical Journal
2017-02 | Journal article
Part of ISSN: 0006-3495
Source: Self-asserted source
Zilong Li

Peer review (3 reviews for 3 publications/grants)

Review activity for Biophysical journal. (1)
Review activity for Faculty Opinions (1)
Review activity for PLoS computational biology. (1)