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algorithms, artificial intelligence, bibliometrics, bioinformatics, machine learning, mass spectrometry, proteomics
Netherlands, Sweden

Biography

Magnus Palmblad is Associate Professor and Head of Bioinformatics at the Center for Proteomics and Metabolomics of the Leiden University Medical Center (LUMC). He did his MSc in Molecular Biotechnology at Uppsala University with minors in mathematics and computer science from the University of Maryland, and received his PhD in Ion Physics at Uppsala University in 2002. After a 3-year postdoc at the Center for Accelerator Mass Spectrometry at Lawrence Livermore National Laboratory, he was appointed as Senior Research Fellow at the University of Reading’s BioCentre and joined the LUMC Biomolecular Mass Spectrometry Unit in 2007, where he was instrumental in evolving this to the present Center for Proteomics and Metabolomics. His main research interests are in computational proteomics, including machine leaning/AI, novel algorithms, and data analysis workflows. He has also published extensively on systematic analysis of the biomedical literature combining text mining and computational chemistry. Dr. Palmblad has served on Editorial Boards of several journals, including currently as Associate Editor of the Journal of Proteome Research.

Activities

Employment (5)

Leids Universitair Medisch Centrum: Leiden, Zuid-Holland, NL

2012 to present | Associate Professor (Center for Proteomics and Metabolomics)
Employment
Source: Self-asserted source
Magnus Palmblad

Leids Universitair Medisch Centrum: Leiden, Zuid-Holland, NL

2007 to 2012 | Assistant Professor (Department of Parasitology)
Employment
Source: Self-asserted source
Magnus Palmblad

University of Reading: Reading, Berkshire, GB

2005 to 2007 | Senior Research Fellow (The BioCentre)
Employment
Source: Self-asserted source
Magnus Palmblad

Lawrence Livermore National Laboratory: Livermore, CA, US

2002 to 2005 | Postdoctoral Research Associate (Center for Accelerator Mass Spectrometry)
Employment
Source: Self-asserted source
Magnus Palmblad

Uppsala University: Uppsala, SE

1998 to 2002
Employment
Source: Self-asserted source
Magnus Palmblad

Education and qualifications (6)

American Chemical Society: Washington D.C., DC, US

ACS Reviewer Lab Certificate of Completion (ACS Reviewer Lab)
Education
Source: check_circle
American Chemical Society Reviewers Lab

Leiden University: Leiden, NL

2017-01-12 to present | University Teaching Qualification (BKO)
Qualification
Source: Self-asserted source
Magnus Palmblad

American Chemical Society: Washington, DC, US

2021 to 2021 | ACS Leading Inclusively DEIR Course
Education
Source: Self-asserted source
Magnus Palmblad

Uppsala Universitet: Uppsala, SE

1998 to 2002 | Ph.D. (Division of Ion Physics)
Education
Source: Self-asserted source
Magnus Palmblad

Uppsala Universitet: Uppsala, SE

1992 to 1998 | M.Sc.
Education
Source: Self-asserted source
Magnus Palmblad

University of Maryland at College Park: College Park, MD, US

1995 to 1996 (Mathematics)
Education
Source: Self-asserted source
Magnus Palmblad

Professional activities (17)

American Chemical Society: Washington, DC, US

2022-10-04 to present | Premium
Membership
Source: Self-asserted source
Magnus Palmblad

American Chemical Society: Washington, DC, US

2022-07-01 to present | Associate Editor (Journal of Proteome Research)
Service
Source: Self-asserted source
Magnus Palmblad

Lorentz Center: Leiden, Zuid-Holland, NL

2021-05-01 to present | Workshop Organizer (Proteomics and Machine Learning)
Service
Source: Self-asserted source
Magnus Palmblad

Uppsala University: Uppsala, SE

2021 to present | Visiting Scholar (Analytical Chemistry)
Invited position
Source: Self-asserted source
Magnus Palmblad

Human Proteome Organisation: Houston, TX, US

2018 to present | Awards Committee, Member
Service
Source: Self-asserted source
Magnus Palmblad

Human Proteome Organisation: Houston, TX, US

2018 to present | Bioinformatics Hub, Organizer
Service
Source: Self-asserted source
Magnus Palmblad

American Society for Mass Spectrometry: Santa Fe, New Mexico, US

2018 to present | Mass Spectrometry Software, Workshop Organizer
Membership
Source: Self-asserted source
Magnus Palmblad

University of Tartu: Tartu, EE

2017 to present | External Advisory Council Member (Erasmus Mundus Joint Master's Program Excellence in Analytical Chemistry (EACH))
Service
Source: Self-asserted source
Magnus Palmblad

Human Proteome Organisation: Houston, TX, US

2017 to present | Mass Spectrometry Pillar, Member
Membership
Source: Self-asserted source
Magnus Palmblad

American Society for Mass Spectrometry: Santa Fe, New Mexico, US

2017 to present | Bioinformatics Hub, Organizer
Service
Source: Self-asserted source
Magnus Palmblad

Association of Biomolecular Resource Facilities: Lexington, KY, US

2010 to present
Membership
Source: Self-asserted source
Magnus Palmblad

Human Proteome Organisation: Houston, TX, US

2008 to present
Membership
Source: Self-asserted source
Magnus Palmblad

American Society for Mass Spectrometry: Santa Fe, New Mexico, US

2000 to present
Membership
Source: Self-asserted source
Magnus Palmblad

Association of Biomolecular Resource Facilities: Lexington, KY, US

2019-03 to 2023-03 | Executive Board, Member
Service
Source: Self-asserted source
Magnus Palmblad

American Chemical Society: Washington, DC, US

2021-09-01 to 2022-06-30 | Topic Editor for Computational Proteomics (Journal of Proteome Research)
Service
Source: Self-asserted source
Magnus Palmblad

Lorentz Center: Leiden, Zuid-Holland, NL

2019-05-02 to 2020-12-31 | Workshop Organizer (Automated Workflow Composition in the Life Sciences)
Service
Source: Self-asserted source
Magnus Palmblad

Association of Biomolecular Resource Facilities: Lexington, KY, US

2013 to 2019 | iPRG (chair 2017-2019)
Service
Source: Self-asserted source
Magnus Palmblad

Funding (20)

Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) 2023 Meeting

2022-11 to 2023-11 | Grant
Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Den Haag, NL)
Source: Self-asserted source
Magnus Palmblad

LysoDriver: Driving intracellular pathogens to degradation by reinforcing lysosomal delivery

2022 to 2026 | Grant
NWO (Den Haag, NL)
Source: Self-asserted source
Magnus Palmblad

Facilitating the “Great Bake Off” of Bioinformatics Workflows

2022 to 2025 | Grant
NWO (Den Haag, Zuid-Holland, NL)
Source: Self-asserted source
Magnus Palmblad

Climate change and impact on critical contaminants and lipids in Arctic Seafood.

2021 to 2026 | Grant
Research Council of Norway (Oslo, NO)
Source: Self-asserted source
Magnus Palmblad

Increasing the translational value of public proteomics datasets: Automatic metadata-driven reanalysis in cloud infrastructures

2021 to 2023 | Grant
ELIXIR (Hinxton, Cambridgeshire, GB)
Source: Self-asserted source
Magnus Palmblad

Proteomics and Machine Learning

2021 to 2022 | Grant
Lorenz Center (Leiden, Zuid-Holland, NL)
Source: Self-asserted source
Magnus Palmblad

Comparison, Benchmarking and Dissemination of Proteomics Data Analysis Pipelines

2019-09 to 2021-11 | Grant
ELIXIR (Hinxton, Cambridgeshire, GB)
Source: Self-asserted source
Magnus Palmblad

Automated Workflow Composition in the Life Sciences

2019-05 to 2020-04 | Grant
Lorentz Center (Leiden, Zuid-Holland, NL)
Source: Self-asserted source
Magnus Palmblad

ELIXIR Implementation Study Proteomics Community

2018-06 to 2019-06 | Grant
ELIXIR (Hinxton, Cambridgeshire, GB)
Source: Self-asserted source
Magnus Palmblad

Updating and Improving the ASMS Collaborative Network Analysis

2018 to 2020 | Contract
ASMS (Santa Fe, United States, US)
Source: Self-asserted source
Magnus Palmblad

ENTOFÔR Network on Insects in the Circular Economy

2017 to 2019 | Grant
The Research Council of Norway (Oslo, Europe, NO)
Source: Self-asserted source
Magnus Palmblad

Exploring Collaborative Networks and Building Interactive Bibliometric Maps for ASMS Members

2015 to 2017 | Contract
ASMS (Santa Fe, United States, US)
Source: Self-asserted source
Magnus Palmblad

Analysis of omega 3- and 6 fatty acid metabolism in cigarette smoke-induced lung inflammation

2015 to 2016 | Grant
Nederlandse Organisatie voor Wetenschappelijk Onderzoek (The Hague, NL)
Source: Self-asserted source
Magnus Palmblad

Proteomics Analysis of Pregnancy

2014 to 2016 | Grant
Innovation Budget Amphia Hospital (Breda, Europe, NL)
Source: Self-asserted source
Magnus Palmblad

An Integrated Approach to Molecular Characterization of Zebrafish as a Biomedical Model

2011-01 to 2017-12 | Grant
Nederlandse Organisatie voor Wetenschappelijk Onderzoek (The Hague, NL)
GRANT_NUMBER:

917.11.398

Source: Self-asserted source
Magnus Palmblad

Parallelization of processing modules for analysis of liquid chromatography - mass spectrometry data

2011-01 to 2012-01 | Grant
Nederlandse Organisatie voor Wetenschappelijk Onderzoek (The Hague, NL)
GRANT_NUMBER:

NRG-2010.06

Source: Self-asserted source
Magnus Palmblad

Towards Treatments For Premature Ageing Diseases

2008-01 to 2011-01 | Grant
EUREKA (Brussels, Europe, BE)
GRANT_NUMBER: 4185
Source: Self-asserted source
Magnus Palmblad

Taeniasis and cysticercosis research in Ecuador, a molecular approach

2008 to 2010 | Grant
Dr. P.C. Flu Foundation (Leiden, the Netherlands, NL)
Source: Self-asserted source
Magnus Palmblad

A Label-free Proteomic Approach to Study Heat Shock Response in Yeast

2007 to 2007 | Grant
Nuffield Foundation (London, GB)
Source: Self-asserted source
Magnus Palmblad

Biomedical Accelerator Mass Spectrometry

2005 to 2009 | Grant
National Institutes of Health (Md., Md., US)
GRANT_NUMBER:

P41 RR013461

Source: Self-asserted source
Magnus Palmblad

Peer review (224 reviews for 39 publications/grants)

Review activity for Acta tropica. (1)
Review activity for Analytical chemistry. (37)
Review activity for Bioinformatics (13)
Review activity for BMC bioinformatics (1)
Review activity for Briefings in bioinformatics. (3)
Review activity for Communications biology. (6)
Review activity for Database. (1)
Review activity for F1000Research. (2)
Review activity for Food chemistry. (1)
Review activity for Food chemistry. (1)
Review activity for Food control. (3)
Review activity for International journal of cardiology. (1)
Review activity for International journal of cardiology. (1)
Review activity for International journal of molecular sciences. (1)
Review activity for Journal of agricultural and food chemistry. (3)
Review activity for Journal of chromatography A. (1)
Review activity for Journal of mass spectrometry and advances in the clinical lab. (3)
Review activity for Journal of mass spectrometry. (3)
Review activity for Journal of molecular and cellular cardiology. (2)
Review activity for Journal of molecular biology. (1)
Review activity for Journal of pharmaceutical and biomedical analysis. (1)
Review activity for Journal of proteome research. (51)
Review activity for Journal of proteome research. (39)
Review activity for Journal of proteomics. (2)
Review activity for Journal of the American Society for Mass Spectrometry. (8)
Review activity for Journal of the Association for Information Science and Technology. (2)
Review activity for Molecular & cellular proteomics. (3)
Review activity for MSystems. (1)
Review activity for Natural computing. (1)
Review activity for Nature biotechnology. (2)
Review activity for Nature methods. (2)
Review activity for Nucleic acids research. (7)
Review activity for PLoS computational biology. (3)
Review activity for PloS one. (2)
Review activity for Proteomics. (1)
Review activity for Quantitative science studies. (3)
Review activity for Rapid communications in mass spectrometry : (8)
Review activity for RSC advances (2)
Review activity for Scientific reports. (1)