Personal information

Activities

Employment (8)

Alex's Lemonade Stand Foundation for Childhood Cancer: Wynnewood, PA, US

2022-12 to present | Senior Data Scientist (Childhood Cancer Data Lab)
Employment
Source: Self-asserted source
Joshua A. Shapiro

Alex's Lemonade Stand Foundation for Childhood Cancer: Wynnewood, PA, US

2019-09 to 2022-12 | Data Scientist (Childhood Cancer Data Lab)
Employment
Source: Self-asserted source
Joshua A. Shapiro

Bryn Mawr College: Bryn Mawr, PA, US

2013-09 to 2019-08 | Assistant Professor (Biology)
Employment
Source: Self-asserted source
Joshua A. Shapiro

Princeton University: Princeton, NJ, US

2011 to 2013 | Associate Professional Specialist (Lewis-Sigler Institute for Integrative Genomics)
Employment
Source: Self-asserted source
Joshua A. Shapiro

Bryn Mawr College: Bryn Mawr, Pennsylvania, US

2011 to 2013 | Visiting Assistant Professor (Biology)
Employment
Source: Self-asserted source
Joshua A. Shapiro

Princeton University: Princeton, NJ, US

2007 to 2011 | Post-Doctoral Research Associate (Lewis Sigler Institute for Integrative Genomics)
Employment
Source: Self-asserted source
Joshua A. Shapiro

Princeton University: Princeton, NJ, US

2008 to 2009 | Lecturer (Molecular Biology)
Employment
Source: Self-asserted source
Joshua A. Shapiro

University of Virginia: Charlottesville, VA, US

2000-01 to 2000-08 | Laboratory Technician (Cell Biology)
Employment
Source: Self-asserted source
Joshua A. Shapiro

Education and qualifications (2)

University of Chicago: Chicago, IL, US

2007 | PhD (Ecology and Evolution)
Education
Source: Self-asserted source
Joshua A. Shapiro

Williams College: Williamstown, MA, US

1998 | BA (Biology)
Education
Source: Self-asserted source
Joshua A. Shapiro

Professional activities (1)

United States Bureau of Educational and Cultural Affairs Fulbright Program: Washington, DC, US

1999 | Fulbright Scholar (Centre for Research on Introduced Marine Pests, CSIRO, Australia)
Distinction
Source: Self-asserted source
Joshua A. Shapiro

Works (16)

Identifying tumor type and cell type-specific gene expression alterations in pediatric central nervous system tumors

Nature Communications
2024-04-30 | Journal article
Contributors: Min Kyung Lee; Nasim Azizgolshani; Joshua A. Shapiro; Lananh N. Nguyen; Fred W. Kolling; George J. Zanazzi; Hildreth Robert Frost; Brock C. Christensen
Source: check_circle
Crossref

The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors

2024-04-24 | Preprint
Contributors: Allegra G. Hawkins; Joshua A. Shapiro; Stephanie J. Spielman; David S. Mejia; Deepashree Venkatesh Prasad; Nozomi Ichihara; Arkadii Yakovets; Kurt G. Wheeler; Chante J. Bethell; Steven M. Foltz et al.
Source: check_circle
Crossref

OpenPBTA: The Open Pediatric Brain Tumor Atlas

Cell Genomics
2023-07 | Journal article
Part of ISSN: 2666-979X
Contributors: Joshua A. Shapiro; Krutika S. Gaonkar; Stephanie J. Spielman; Candace L. Savonen; Chante J. Bethell; Run Jin; Komal S. Rathi; Yuankun Zhu; Laura E. Egolf; Bailey K. Farrow et al.
Source: Self-asserted source
Joshua A. Shapiro

Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality

Cell Reports
2021-03 | Journal article | Author
Part of ISSN: 2211-1247
Contributors: Mai T. Dang; Michael V. Gonzalez; Krutika S. Gaonkar; Komal S. Rathi; Patricia Young; Sherjeel Arif; Li Zhai; Zahidul Alam; Samir Devalaraja; Tsun Ki Jerrick To et al.
Source: Self-asserted source
Joshua A. Shapiro

Understand the genomic diversity and evolution of fungal pathogen Candida glabrata by genome-wide analysis of genetic variations

Methods
2020-04 | Journal article
Part of ISSN: 1046-2023
Contributors: Xiaoxian Guo; Ruoyu Zhang; Yudong Li; Zhe Wang; Olena P. Ishchuk; Khadija M. Ahmad; Josephine Wee; Jure Piskur; Joshua A. Shapiro; Zhenglong Gu
Source: Self-asserted source
Joshua A. Shapiro

Draft Genome Sequence of Exiguobacterium sp. Strain BMC-KP, an Environmental Isolate from Bryn Mawr, Pennsylvania

Genome Announc.
2015-10-08 | Journal article
Contributors: Peter Hyson; Joshua A. Shapiro; Michelle W. Wien
Source: Self-asserted source
Joshua A. Shapiro via Crossref Metadata Search
grade
Preferred source (of 2)‎

RNA-seq analysis reveals a six-gene SoxR regulon in Streptomyces coelicolor

PLoS ONE
2014 | Journal article
EID:

2-s2.0-84939784999

Contributors: Naseer, N.; Shapiro, J.A.; Chander, M.
Source: Self-asserted source
Joshua A. Shapiro via Scopus - Elsevier
grade
Preferred source (of 2)‎

Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity

Nature Genetics
2012 | Journal article
EID:

2-s2.0-84857551173

Contributors: Andersen, E.C.; Gerke, J.P.; Shapiro, J.A.; Crissman, J.R.; Ghosh, R.; Bloom, J.S.; Félix, M.-A.; Kruglyak, L.
Source: Self-asserted source
Joshua A. Shapiro via Scopus - Elsevier
grade
Preferred source (of 3)‎

Natural variation in a chloride channel subunit confers avermectin resistance in C. elegans

Science
2012 | Journal article
EID:

2-s2.0-84856649148

Contributors: Ghosh, R.; Andersen, E.C.; Shapiro, J.A.; Gerke, J.P.; Kruglyak, L.
Source: Self-asserted source
Joshua A. Shapiro via Scopus - Elsevier
grade
Preferred source (of 3)‎

Dissection of genetically complex traits with extremely large pools of yeast segregants

Nature
2010 | Journal article
EID:

2-s2.0-77951143253

Contributors: Ehrenreich, I.M.; Torabi, N.; Jia, Y.; Kent, J.; Martis, S.; Shapiro, J.A.; Gresham, D.; Caudy, A.A.; Kruglyak, L.
Source: Self-asserted source
Joshua A. Shapiro via Scopus - Elsevier
grade
Preferred source (of 2)‎

Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility

Genome Research
2010 | Journal article
EID:

2-s2.0-77955134372

Contributors: Lu, X.; Shapiro, J.A.; Ting, C.-T.; Li, Y.; Li, C.; Xu, J.; Huang, H.; Cheng, Y.-J.; Greenberg, A.J.; Li, S.-H. et al.
Source: Self-asserted source
Joshua A. Shapiro via Scopus - Elsevier

Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae

Nature
2009 | Journal article
EID:

2-s2.0-62649126517

Contributors: Schacherer, J.; Shapiro, J.A.; Ruderfer, D.M.; Kruglyak, L.
Source: Self-asserted source
Joshua A. Shapiro via Scopus - Elsevier
grade
Preferred source (of 2)‎

Decoupled differentiation of gene expression and coding sequence among Drosophila populations

Genes and Genetic Systems
2008 | Journal article
EID:

2-s2.0-48949083869

Contributors: Kohn, M.H.; Shapiro, J.; Wu, C.-I.
Source: Self-asserted source
Joshua A. Shapiro via Scopus - Elsevier
grade
Preferred source (of 2)‎

Adaptive genic evolution in the Drosophila genomes

Proceedings of the National Academy of Sciences of the United States of America
2007 | Journal article
EID:

2-s2.0-33847781444

Contributors: Shapiro, J.A.; Huang, W.; Zhang, C.; Hubisz, M.J.; Lu, J.; Turissini, D.A.; Fang, S.; Wang, H.-Y.; Hudson, R.R.; Nielsen, R. et al.
Source: Self-asserted source
Joshua A. Shapiro via Scopus - Elsevier

Detecting novel low-abundant transcripts in Drosophila

RNA
2005 | Journal article
EID:

2-s2.0-21844454212

Contributors: Lee, S.; Bao, J.; Zhou, G.; Shapiro, J.; Xu, J.; Run, Z.S.; Lu, X.; Clark, T.; Johnson, D.; Kim, Y.C. et al.
Source: Self-asserted source
Joshua A. Shapiro via Scopus - Elsevier

Spermatid-specific promoter of the SP-10 gene functions as an insulator in somatic cells

Developmental Biology
2003 | Journal article
EID:

2-s2.0-0141682276

Contributors: Reddi, P.P.; Shore, A.N.; Shapiro, J.A.; Anderson, A.; Stoler, M.H.; Acharya, K.K.
Source: Self-asserted source
Joshua A. Shapiro via Scopus - Elsevier
grade
Preferred source (of 2)‎