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University of Chicago

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Works (10)

Functional innovation through new genes as a general evolutionary process

Nature Genetics
2025-02 | Journal article
DOI: 10.1038/s41588-024-02059-0
Contributors: Shengqian Xia; Jianhai Chen; Deanna Arsala; J. J. Emerson; Manyuan Long
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Publisher Correction: Functional innovation through new genes as a general evolutionary process

Nature Genetics
2025-02-07 | Journal article
DOI: 10.1038/s41588-025-02116-2
Contributors: Shengqian Xia; Jianhai Chen; Deanna Arsala; J. J. Emerson; Manyuan Long
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Subcellular Enrichment Patterns of New Genes in Drosophila Evolution

Molecular Biology and Evolution
2025-02-03 | Journal article
DOI: 10.1093/molbev/msaf038
Contributors: Chuan Dong; Shengqian Xia; Li Zhang; Deanna Arsala; Chengchi Fang; Shengjun Tan; Andrew G Clark; Manyuan Long; Katja Nowick
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The Rapid Evolution of De Novo Proteins in Structure and Complex

Genome Biology and Evolution
2024-06-04 | Journal article
DOI: 10.1093/gbe/evae107
Contributors: Jianhai Chen; Qingrong Li; Shengqian Xia; Deanna Arsala; Dylan Sosa; Dong Wang; Manyuan Long
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High-Quality Genome Assemblies Reveal Evolutionary Dynamics of Repetitive DNA and Structural Rearrangements in the Drosophila virilis Subgroup

Genome Biology and Evolution
2024-01-05 | Journal article
DOI: 10.1093/gbe/evad238
Contributors: Jullien M Flynn; Yasir H Ahmed-Braimah; Manyuan Long; Rod A Wing; Andrew G Clark; Andrea Betancourt
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High quality genome assemblies reveal evolutionary dynamics of repetitive DNA and structural rearrangements in theDrosophila virilissub-group

2023-08-14 | Preprint
DOI: 10.1101/2023.08.13.553086
Contributors: Jullien M. Flynn; Yasir H. Ahmed-Braimah; Manyuan Long; Rod A. Wing; Andrew G. Clark
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Human Gene Age Dating Reveals an Early and Rapid Evolutionary Construction of the Adaptive Immune System

Genome Biology and Evolution
2023-05-05 | Journal article
DOI: 10.1093/gbe/evad081
Contributors: Li Zhang; Jonathan J Park; Matthew B Dong; Deanna Arsala; Shengqian Xia; Jianhai Chen; Dylan Sosa; Jared E Atlas; Manyuan Long; Sidi Chen et al.
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Species-specific partial gene duplication in Arabidopsis thaliana evolved novel phenotypic effects on morphological traits under strong positive selection

The Plant Cell
2022-02-03 | Journal article
DOI: 10.1093/plcell/koab291
Contributors: Yuan Huang; Jiahui Chen; Chuan Dong; Dylan Sosa; Shengqian Xia; Yidan Ouyang; Chuanzhu Fan; Dezhu Li; Emily Mortola; Manyuan Long et al.
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Evolutionary Dynamics of Abundant 7-bp Satellites in the Genome of Drosophila virilis

Molecular Biology and Evolution
2020-05-01 | Journal article
DOI: 10.1093/molbev/msaa010
Contributors: Jullien M Flynn; Manyuan Long; Rod A Wing; Andrew G Clark; Irina Arkhipova
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Gene duplicates resolving sexual conflict rapidly evolved essential gametogenesis functions

Nature Ecology & Evolution
2018-02-19 | Journal article
DOI: 10.1038/s41559-018-0471-0
Contributors: Nicholas W. VanKuren; Manyuan Long
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