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Works (10)

Bayesian model discovery for reverse-engineering biochemical networks from data

2023-09-17 | Preprint
Contributors: Andreas Christ Sølvsten Jørgensen; Marc Sturrock; Atiyo Ghosh; Vahid Shahrezaei
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Data-driven spatio-temporal modelling of glioblastoma

Royal Society Open Science
2023-03 | Journal article
Contributors: Andreas Christ Sølvsten Jørgensen; Ciaran Scott Hill; Marc Sturrock; Wenhao Tang; Saketh R. Karamched; Dunja Gorup; Mark F. Lythgoe; Simona Parrinello; Samuel Marguerat; Vahid Shahrezaei
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Systematic comparison of modeling fidelity levels and parameter inference settings applied to negative feedback gene regulation

PLOS Computational Biology
2022-12-15 | Journal article
Contributors: Adrien Coulier; Pedro Mendes; Prashant Singh; Marc Sturrock; Andreas Hellander
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Efficient Bayesian inference for stochastic agent-based models

PLOS Computational Biology
2022-10-05 | Journal article
Contributors: Andreas Christ Sølvsten Jørgensen; Mark Alber; Atiyo Ghosh; Marc Sturrock; Vahid Shahrezaei
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Emergent expression of fitness-conferring genes by phenotypic selection

PNAS Nexus
2022-07-15 | Journal article
Contributors: Marta Ciechonska; Marc Sturrock; Alice Grob; Gerald Larrouy-Maumus; Vahid Shahrezaei; Mark Isalan; Karen E Nelson
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Benchmarking imputation methods for network inference using a novel method of synthetic scRNA-seq data generation

2021-10-14 | Preprint
Contributors: Ayoub Lasri; Vahid Shahrezaei; Marc Sturrock
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Efficient inference for agent-based models of real-world phenomena

2021-10-05 | Preprint
Contributors: Andreas Christ Sølvsten Jørgensen; Atiyo Ghosh; Marc Sturrock; Vahid Shahrezaei
Source: check_circle
Crossref

A pipeline for systematic comparison of model levels and parameter inference settings applied to negative feedback gene regulation

2021-05-17 | Preprint
Contributors: Adrien Coulier; Prashant Singh; Marc Sturrock; Andreas Hellander
Source: check_circle
Crossref

A push-pull system of repressors matches levels of glucose transporters to extracellular glucose in budding yeast

2021-04-21 | Preprint
Contributors: Luis Fernando Montaño-Gutierrez; Marc Sturrock; Iseabail Farquhar; Kevin Correia; Vahid Shahrezaei; Peter S. Swain
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Ohm’s Law for increasing fitness gene expression with selection pressure

2019-07-05 | Preprint
Contributors: Marta Ciechonska; Marc Sturrock; Alice Grob; Gerald Larrouy-Maumus; Vahid Shahrezaei; Mark Isalan
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Peer review (3 reviews for 3 publications/grants)

Review activity for Computers in biology and medicine. (1)
Review activity for Nature biotechnology. (1)
Review activity for Nature cell biology (1)