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Works (5)

ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction

2023-10-06 | Preprint
Contributors: José P. Faria; Filipe Liu; Janaka N. Edirisinghe; Nidhi Gupta; Samuel M.D. Seaver; Andrew P. Freiburger; Qizhi Zhang; Pamela Weisenhorn; Neal Conrad; Raphy Zarecki et al.
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Crossref

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes

Nucleic Acids Research
2021-01-08 | Journal article
Contributors: Samuel M D Seaver; Filipe Liu; Qizhi Zhang; James Jeffryes; José P Faria; Janaka N Edirisinghe; Michael Mundy; Nicholas Chia; Elad Noor; Moritz E Beber et al.
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The ModelSEED Database for the integration of metabolic annotations and the reconstruction, comparison, and analysis of metabolic models for plants, fungi, and microbes

2020-04-01 | Preprint
Contributors: Samuel M. D. Seaver; Filipe Liu; Qizhi Zhang; James Jeffryes; José P. Faria; Janaka N. Edirisinghe; Michael Mundy; Nicholas Chia; Elad Noor; Moritz E. Beber et al.
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Crossref

PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency

The Plant Journal
2018-08-09 | Journal article
Part of ISSN: 0960-7412
Contributors: Samuel M. D. Seaver; Claudia Lerma-Ortiz; Neal Conrad; Arman Mikaili; Avinash Sreedasyam; Andrew D. Hanson; Christopher S. Henry
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Sam Seaver via Crossref Metadata Search

High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource

Proceedings of the National Academy of Sciences
2014-06-09 | Journal article
Part of ISSN: 0027-8424
Contributors: Samuel M. D. Seaver; Svetlana Gerdes; Océane Frelin; Claudia Lerma-Ortiz; Louis M. T. Bradbury; Rémi Zallot; Ghulam Hasnain; Thomas D. Niehaus; Basma El Yacoubi; Shiran Pasternak et al.
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Sam Seaver via Crossref Metadata Search

Peer review (3 reviews for 3 publications/grants)

Review activity for 3 biotech. (1)
Review activity for Nature communications (1)
Review activity for PLoS computational biology. (1)