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Expanded encyclopaedias of DNA elements in the human and mouse genomes.

Nature
2020-07-29 | Journal article
DOI: 10.1038/s41586-020-2493-4
PMID: 32728249
Source: Self-asserted source
Rajinder Kaul
grade
Preferred source (of 2)‎

Global reference mapping of human transcription factor footprints.

Nature
2020-07-29 | Journal article
DOI: 10.1038/s41586-020-2528-x
PMID: 32728250
Source: Self-asserted source
Rajinder Kaul

Index and biological spectrum of human DNase I hypersensitive sites.

Nature
2020-07-29 | Journal article
DOI: 10.1038/s41586-020-2559-3
PMID: 32728217
Source: Self-asserted source
Rajinder Kaul

Perspectives on ENCODE.

Nature
2020-07-29 | Journal article
DOI: 10.1038/s41586-020-2449-8
Part of PMID: 32728248
Source: Self-asserted source
Rajinder Kaul

Integrated epigenomic profiling reveals endogenous retrovirus reactivation in renal cell carcinoma.

EBioMedicine
2019-03-01 | Journal article
DOI: 10.1016/j.ebiom.2019.01.063
PMID: 30827930
PMC: PMC6441874
Source: Self-asserted source
Rajinder Kaul

Integrated Functional Genomic Analysis Enables Annotation of Kidney Genome-Wide Association Study Loci.

Journal of the American Society of Nephrology : JASN
2019-02-13 | Journal article
DOI: 10.1681/asn.2018030309
PMID: 30760496
Source: Self-asserted source
Rajinder Kaul

Integrative detection and analysis of structural variation in cancer genomes.

Nature genetics
2018-09-10 | Journal article
DOI: 10.1038/s41588-018-0195-8
PMID: 30202056
PMC: PMC6301019
Source: Self-asserted source
Rajinder Kaul

Co-expression networks reveal the tissue-specific regulation of transcription and splicing.

Genome research
2017-10-11 | Journal article
DOI: 10.1101/gr.216721.116
PMID: 29021288
PMC: PMC5668942
Source: Self-asserted source
Rajinder Kaul

Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease.

Nature genetics
2017-10-11 | Journal article
DOI: 10.1038/ng.3969
PMID: 29019975
PMC: PMC6636856
Source: Self-asserted source
Rajinder Kaul

Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis.

Genome research
2017-10-11 | Journal article
DOI: 10.1101/gr.216754.116
PMID: 29021290
PMC: PMC5668943
Source: Self-asserted source
Rajinder Kaul

Dynamic landscape and regulation of RNA editing in mammals.

Nature
2017-10-01 | Journal article
DOI: 10.1038/nature24041
PMID: 29022589
PMC: PMC5723435
Source: Self-asserted source
Rajinder Kaul

Genetic effects on gene expression across human tissues.

Nature
2017-10-01 | Journal article
DOI: 10.1038/nature24277
PMID: 29022597
PMC: PMC5776756
Source: Self-asserted source
Rajinder Kaul

Landscape of X chromosome inactivation across human tissues.

Nature
2017-10-01 | Journal article
DOI: 10.1038/nature24265
PMID: 29022598
PMC: PMC5685192
Source: Self-asserted source
Rajinder Kaul
grade
Preferred source (of 2)‎

The impact of rare variation on gene expression across tissues.

Nature
2017-10-01 | Journal article
DOI: 10.1038/nature24267
PMID: 29022581
PMC: PMC5877409
Source: Self-asserted source
Rajinder Kaul

Erratum: Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.

Nature genetics
2016-01-01 | Journal article
DOI: 10.1038/ng0116-101c
PMID: 26711113
Source: Self-asserted source
Rajinder Kaul

Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.

Nature genetics
2015-10-26 | Journal article
DOI: 10.1038/ng.3432
PMID: 26502339
PMC: PMC4666772
Source: Self-asserted source
Rajinder Kaul

Integrative analysis of 111 reference human epigenomes.

Nature
2015-02-01 | Journal article
DOI: 10.1038/nature14248
PMID: 25693563
PMC: PMC4530010
Source: Self-asserted source
Rajinder Kaul

A comparative encyclopedia of DNA elements in the mouse genome.

Nature
2014-11-01 | Journal article
DOI: 10.1038/nature13992
PMID: 25409824
PMC: PMC4266106
Source: Self-asserted source
Rajinder Kaul

Conservation of trans-acting circuitry during mammalian regulatory evolution.

Nature
2014-11-01 | Journal article
DOI: 10.1038/nature13972
PMID: 25409825
PMC: PMC4405208
Source: Self-asserted source
Rajinder Kaul

Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.

Science (New York, N.Y.)
2014-11-01 | Journal article
DOI: 10.1126/science.1246426
PMID: 25411453
PMC: PMC4337786
Source: Self-asserted source
Rajinder Kaul

Principles of regulatory information conservation between mouse and human.

Nature
2014-11-01 | Journal article
DOI: 10.1038/nature13985
PMID: 25409826
PMC: PMC4343047
Source: Self-asserted source
Rajinder Kaul

Polymyxin resistance of Pseudomonas aeruginosa phoQ mutants is dependent on additional two-component regulatory systems.

Antimicrobial agents and chemotherapy
2013-03-04 | Journal article
DOI: 10.1128/AAC.02353-12
PMID: 23459479
PMC: PMC3632916
Source: Self-asserted source
Rajinder Kaul

Reconciliation of sequence data and updated annotation of the genome of Agrobacterium tumefaciens C58, and distribution of a linear chromosome in the genus Agrobacterium.

Applied and environmental microbiology
2012-12-14 | Journal article
DOI: 10.1128/AEM.03192-12
PMID: 23241979
PMC: PMC3568625
Source: Self-asserted source
Rajinder Kaul

Genome sequence of Francisella tularensis subspecies holarctica strain FSC200, isolated from a child with tularemia.

Journal of bacteriology
2012-12-01 | Journal article
DOI: 10.1128/JB.01040-12
PMID: 23209222
PMC: PMC3510583
Source: Self-asserted source
Rajinder Kaul

Systematic localization of common disease-associated variation in regulatory DNA.

Science (New York, N.Y.)
2012-09-05 | Journal article
DOI: 10.1126/science.1222794
PMID: 22955828
PMC: PMC3771521
Source: Self-asserted source
Rajinder Kaul

An expansive human regulatory lexicon encoded in transcription factor footprints.

Nature
2012-09-01 | Journal article
DOI: 10.1038/nature11212
PMID: 22955618
PMC: PMC3736582
Source: Self-asserted source
Rajinder Kaul

An integrated encyclopedia of DNA elements in the human genome.

Nature
2012-09-01 | Journal article
DOI: 10.1038/nature11247
PMID: 22955616
PMC: PMC3439153
Source: Self-asserted source
Rajinder Kaul

The accessible chromatin landscape of the human genome.

Nature
2012-09-01 | Journal article
DOI: 10.1038/nature11232
PMID: 22955617
PMC: PMC3721348
Source: Self-asserted source
Rajinder Kaul

Widespread plasticity in CTCF occupancy linked to DNA methylation.

Genome research
2012-09-01 | Journal article
DOI: 10.1101/gr.136101.111
PMID: 22955980
PMC: PMC3431485
Source: Self-asserted source
Rajinder Kaul

An encyclopedia of mouse DNA elements (Mouse ENCODE).

Genome biology
2012-08-13 | Journal article
DOI: 10.1186/gb-2012-13-8-418
PMID: 22889292
PMC: PMC3491367
Source: Self-asserted source
Rajinder Kaul

Evolution of Burkholderia pseudomallei in recurrent melioidosis.

PloS one
2012-05-15 | Journal article
DOI: 10.1371/journal.pone.0036507
PMID: 22615773
PMC: PMC3352902
Source: Self-asserted source
Rajinder Kaul

Complete genome sequence of Methanosaeta concilii, a specialist in aceticlastic methanogenesis.

Journal of Bacteriology
2011-05-13 | Journal article
DOI: 10.1128/JB.05031-11
PMID: 21571998
PMC: PMC3133334
Source: Self-asserted source
Rajinder Kaul

A user's guide to the encyclopedia of DNA elements (ENCODE).

PLoS biology
2011-04-19 | Journal article
DOI: 10.1371/journal.pbio.1001046
PMID: 21526222
PMC: PMC3079585
Source: Self-asserted source
Rajinder Kaul

Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X.

Genome research
2011-01-31 | Journal article
DOI: 10.1101/gr.108563.110
PMID: 21282478
PMC: PMC3044854
Source: Self-asserted source
Rajinder Kaul

A human genome structural variation sequencing resource reveals insights into mutational mechanisms.

Cell
2010-11-01 | Journal article
DOI: 10.1016/j.cell.2010.10.027
PMID: 21111241
PMC: PMC3026629
Source: Self-asserted source
Rajinder Kaul

Phenotypic diversity of Escherichia coli O157:H7 strains associated with the plasmid O157.

Journal of microbiology (Seoul, Korea)
2010-06-23 | Journal article
DOI: 10.1007/s12275-010-9228-4
PMID: 20571953
PMC: PMC2951829
Source: Self-asserted source
Rajinder Kaul

Characterization of missing human genome sequences and copy-number polymorphic insertions.

Nature methods
2010-05-01 | Journal article
DOI: 10.1038/nmeth.1451
PMID: 20440878
PMC: PMC2875995
Source: Self-asserted source
Rajinder Kaul

Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer.

BMC biology
2009-11-18 | Journal article
DOI: 10.1186/1741-7007-7-78
PMID: 19922616
PMC: PMC2784454
Source: Self-asserted source
Rajinder Kaul

Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence.

Infection and immunity
2009-06-29 | Journal article
DOI: 10.1128/IAI.00198-09
PMID: 19564389
PMC: PMC2738036
Source: Self-asserted source
Rajinder Kaul

Genetics terminology for respiratory physicians.

Paediatric respiratory reviews
2009-06-02 | Journal article
DOI: 10.1016/j.prrv.2009.04.003
PMID: 19651383
Source: Self-asserted source
Rajinder Kaul
grade
Preferred source (of 3)‎

Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.

PloS one
2009-05-18 | Journal article
DOI: 10.1371/journal.pone.0005584
PMID: 19440302
PMC: PMC2680597
Source: Self-asserted source
Rajinder Kaul

Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental Arthrobacter ancestor.

Journal of bacteriology
2008-08-22 | Journal article
DOI: 10.1128/JB.00721-08
PMID: 18723615
PMC: PMC2580684
Source: Self-asserted source
Rajinder Kaul

Finishing the finished human chromosome 22 sequence.

Genome biology
2008-05-13 | Journal article
DOI: 10.1186/gb-2008-9-5-r78
PMID: 18477386
PMC: PMC2441464
Source: Self-asserted source
Rajinder Kaul

Cone visual pigments of monotremes: filling the phylogenetic gap.

Visual neuroscience
2008-05-01 | Journal article
DOI: 10.1017/s0952523808080255
PMID: 18598396
Source: Self-asserted source
Rajinder Kaul

Mapping and sequencing of structural variation from eight human genomes.

Nature
2008-05-01 | Journal article
DOI: 10.1038/nature06862
PMID: 18451855
PMC: PMC2424287
Source: Self-asserted source
Rajinder Kaul

Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients.

Genomics
2008-04-29 | Journal article
DOI: 10.1016/j.ygeno.2008.02.005
PMID: 18445516
PMC: PMC2587363
Source: Self-asserted source
Rajinder Kaul

Closing gaps in the human genome with fosmid resources generated from multiple individuals.

Nature genetics
2007-12-23 | Journal article
DOI: 10.1038/ng.2007.34
PMID: 18157130
Source: Self-asserted source
Rajinder Kaul

Multiarm high-throughput integration site detection: limitations of LAM-PCR technology and optimization for clonal analysis.

Stem cells and development
2007-06-01 | Journal article
DOI: 10.1089/scd.2007.0015
PMID: 17610368
Source: Self-asserted source
Rajinder Kaul

Unique integration profiles in a canine model of long-term repopulating cells transduced with gammaretrovirus, lentivirus, or foamy virus.

Human gene therapy
2007-05-01 | Journal article
DOI: 10.1089/hum.2007.011
PMID: 17518616
Source: Self-asserted source
Rajinder Kaul

Comparison of HIV-derived lentiviral and MLV-based gammaretroviral vector integration sites in primate repopulating cells.

Molecular therapy : the journal of the American Society of Gene Therapy
2007-04-17 | Journal article
DOI: 10.1038/sj.mt.6300159
PMID: 17440443
Source: Self-asserted source
Rajinder Kaul
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