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Education and qualifications (3)

University of California: Berkeley, CA, US

1990 to 1996 | Ph.D. (Molecular and Cell Biology)
Education
Source: Self-asserted source
Ann Loraine

University of Texas: Austin, TX, US

1984 to 1989 | BS (Zoology)
Education
Source: Self-asserted source
Ann Loraine

University of Texas: Austin, TX, US

1984 to 1989 | BA (Plan II Honors Liberal Arts)
Education
Source: Self-asserted source
Ann Loraine

Professional activities (1)

BDMA Study Section: Bethesda, MD, US

2016 to 2021 | Chartered Member
Service
Source: Self-asserted source
Ann Loraine

Works (26)

Genomic targets of HOP2 are enriched for features found at recombination hotspots

2023-01-25 | Preprint
DOI: 10.1101/2023.01.25.525520
Contributors: Jenya Daradur; Mohamad Kesserwan; Nowlan H. Freese; Ann E. Loraine; C. Daniel Riggs
Source: check_circle
Crossref

AINTEGUMENTA and AINTEGUMENTA-LIKE6 directly regulate floral homeotic, growth, and vascular development genes in young Arabidopsis flowers

Journal of Experimental Botany
2021-07-28 | Journal article
DOI: 10.1093/jxb/erab223
Contributors: Beth A Krizek; Alexis T Bantle; Jorman M Heflin; Han Han; Nowlan H Freese; Ann E Loraine; Rainer Melzer
Source: check_circle
Crossref

AINTEGUMENTA and AINTEGUMENTA-LIKE6 directly regulate floral homeotic and growth genes in young flowers

2020-12-22 | Preprint
DOI: 10.1101/2020.12.22.424043
Contributors: Beth A. Krizek; Alexis T. Bantle; Jorman M. Heflin; Han Han; Nowlan H. Freese; Ann E. Loraine
Source: check_circle
Crossref

BioViz Connect: Web application linking CyVerse cloud resources to genomic visualization in the Integrated Genome Browser

BioRxiv
2020-05-16 | Preprint
DOI: 10.1101/2020.05.15.098533
Source: Self-asserted source
Ann Loraine

An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data.

The Plant journal : for cell and molecular biology
2019-08-23 | Journal article
DOI: 10.1111/tpj.14468
PMID: 31350781
PMC: PMC6899666
Source: Self-asserted source
Ann Loraine

Many rice genes are differentially spliced between roots and shoots but cytokinin has minimal effect on splicing

Plant Direct
2019-05 | Journal article
DOI: 10.1002/pld3.136
Contributors: Nowlan H. Freese; April R. Estrada; Ivory C. Blakley; Jinjie Duan; Ann E. Loraine
Source: check_circle
Crossref

Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future.

Plant direct
2019-01-04 | Journal article
DOI: 10.1002/pld3.109
PMID: 31245752
PMC: PMC6508773
Source: Self-asserted source
Ann Loraine

Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families

Plant Physiology
2018-09 | Journal article
DOI: 10.1104/pp.18.00414
Contributors: Yan O. Zubo; Ivory Clabaugh Blakley; José M. Franco-Zorrilla; Maria V. Yamburenko; Roberto Solano; Joseph J. Kieber; Ann E. Loraine; G. Eric Schaller
Source: check_circle
Crossref

Salt tolerance response revealed by RNA-Seq in a diploid halophytic wild relative of sweet potato.

Scientific reports
2017-08-29 | Journal article
DOI: 10.1038/s41598-017-09241-x
PMID: 28852001
PMC: PMC5575116
Source: Self-asserted source
Ann Loraine

Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis.

Proceedings of the National Academy of Sciences of the United States of America
2017-07-03 | Journal article
DOI: 10.1073/pnas.1620749114
PMID: 28673986
PMC: PMC5530654
Source: Self-asserted source
Ann Loraine

Genome-wide characterization of differential transcript usage inArabidopsis thaliana

2017-05-11 | Preprint
DOI: 10.1101/136770
Contributors: Dries Vaneechoutte; April R. Estrada; Ying-Chen Lin; Ann E. Loraine; Klaas Vandepoele
Source: check_circle
Crossref

Characterization of the cytokinin-responsive transcriptome in rice.

BMC plant biology
2016-12-08 | Journal article
DOI: 10.1186/s12870-016-0932-z
PMID: 27931185
PMC: PMC5146874
Source: Self-asserted source
Ann Loraine

RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.

Plant physiology
2016-05-20 | Journal article
DOI: 10.1104/pp.15.01625
PMID: 27208279
Source: Self-asserted source
Ann Loraine

ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins.

Bioinformatics (Oxford, England)
2016-04-07 | Journal article
DOI: 10.1093/bioinformatics/btw068
PMID: 27153567
PMC: PMC4978921
Source: Self-asserted source
Ann Loraine

Integrated genome browser: visual analytics platform for genomics.

Bioinformatics (Oxford, England)
2016-03-16 | Journal article
DOI: 10.1093/bioinformatics/btw069
PMID: 27153568
PMC: PMC4937187
Source: Self-asserted source
Ann Loraine

A Comparison of transgenic and wild type soybean seeds: analysis of transcriptome profiles using RNA-Seq.

BMC biotechnology
2015-10-01 | Journal article
DOI: 10.1186/s12896-015-0207-z
PMID: 26427366
PMC: PMC4591623
Source: Self-asserted source
Ann Loraine

Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR.

PeerJ
2015-04-28 | Journal article
DOI: 10.7717/peerj.919
PMID: 25945312
PMC: PMC4419537
Source: Self-asserted source
Ann Loraine
grade
Preferred source (of 2)‎

COBRA-LIKE2, a member of the glycosylphosphatidylinositol-anchored COBRA-LIKE family, plays a role in cellulose deposition in arabidopsis seed coat mucilage secretory cells.

Plant physiology
2015-01-12 | Journal article
DOI: 10.1104/pp.114.240671
PMID: 25583925
Source: Self-asserted source
Ann Loraine

Analysis and visualization of RNA-Seq expression data using RStudio, Bioconductor, and Integrated Genome Browser.

Methods in molecular biology (Clifton, N.J.)
2015-01-01 | Journal article
DOI: 10.1007/978-1-4939-2444-8_24
PMID: 25757788
PMC: PMC4387895
Source: Self-asserted source
Ann Loraine

Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems.

BMC bioinformatics
2014-12-16 | Journal article
DOI: 10.1186/s12859-014-0364-4
PMID: 25511303
PMC: PMC4271460
Source: Self-asserted source
Ann Loraine

A protocol for visual analysis of alternative splicing in RNA-Seq data using integrated genome browser.

Methods in molecular biology (Clifton, N.J.)
2014-01-01 | Journal article
DOI: 10.1007/978-1-4939-0700-7_8
PMID: 24792048
PMC: PMC4070736
Source: Self-asserted source
Ann Loraine

Efficient quantification of the health-relevant anthocyanin and phenolic acid profiles in commercial cultivars and breeding selections of blueberries ( Vaccinium spp.).

Journal of agricultural and food chemistry
2013-05-13 | Journal article
DOI: 10.1021/jf400823s
PMID: 23635035
Source: Self-asserted source
Ann Loraine

RNA-seq of Arabidopsis pollen uncovers novel transcription and alternative splicing.

Plant physiology
2013-04-16 | Journal article
DOI: 10.1104/pp.112.211441
PMID: 23590974
Source: Self-asserted source
Ann Loraine

Identification of cytokinin-responsive genes using microarray meta-analysis and RNA-Seq in Arabidopsis.

Plant physiology
2013-03-22 | Journal article
DOI: 10.1104/pp.113.217026
PMID: 23524861
Source: Self-asserted source
Ann Loraine

Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a.

American journal of botany
2012-01-30 | Journal article
DOI: 10.3732/ajb.1100355
PMID: 22291167
Source: Self-asserted source
Ann Loraine

Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm.

Plant physiology
2009-11-04 | Journal article
DOI: 10.1104/pp.109.145318
PMID: 19889879
Source: Self-asserted source
Ann Loraine
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