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Scopus Author ID: 23993365900

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CSIRO: Canberra, AU

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Jana Sperschneider

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A high-resolution haplotype pangenome uncovers somatic hybridization, recombination and intercontinental migration in oat crown rust

2024-03-27 | Preprint
DOI: 10.1101/2024.03.27.583983
Contributors: Eva C. Henningsen; David Lewis; Eric Nazareno; Yung-Fen Huang; Brian J. Steffenson; Brendan Boesen; Shahryar F. Kianian; Eric Stone; Peter N. Dodds; Jana Sperschneider et al.
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Pooled effector library screening in protoplasts rapidly identifies novel Avr genes

Nature Plants
2024-02-26 | Journal article
DOI: 10.1038/s41477-024-01641-y
Contributors: Taj Arndell; Jian Chen; Jana Sperschneider; Narayana M. Upadhyaya; Cheryl Blundell; Nathalie Niesner; Megan A. Outram; Aihua Wang; Steve Swain; Ming Luo et al.
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Crossref

Author Correction: Arbuscular mycorrhizal fungi heterokaryons have two nuclear populations with distinct roles in host–plant interactions

Nature Microbiology
2023-11-21 | Journal article
DOI: 10.1038/s41564-023-01562-0
Contributors: Jana Sperschneider; Gokalp Yildirir; Yanina S. Rizzi; Mathu Malar C; Ariane Mayrand Nicol; Essam Sorwar; Matthew Villeneuve-Laroche; Eric C. H. Chen; Wataru Iwasaki; Elizabeth K. Brauer et al.
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Arbuscular mycorrhizal fungi heterokaryons have two nuclear populations with distinct roles in host–plant interactions

Nature Microbiology
2023-10-26 | Journal article
DOI: 10.1038/s41564-023-01495-8
Contributors: Jana Sperschneider; Gokalp Yildirir; Yanina S. Rizzi; Mathu Malar C; Ariane Mayrand Nicol; Essam Sorwar; Matthew Villeneuve-Laroche; Eric C. H. Chen; Wataru Iwasaki; Elizabeth K. Brauer et al.
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Nuclear exchange generates population diversity in the wheat leaf rust pathogen Puccinia triticina

Nature Microbiology
2023-10-26 | Journal article
DOI: 10.1038/s41564-023-01494-9
Contributors: Jana Sperschneider; Tim Hewitt; David C. Lewis; Sambasivam Periyannan; Andrew W. Milgate; Lee T. Hickey; Rohit Mago; Peter N. Dodds; Melania Figueroa
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Crossref

Session 1 (Part 1) - Making the most of Next Generation Scientists (a panel discussion)

2023-07-02 | Preprint
DOI: 10.52843/cassyni.8xkw2n
Contributors: Alistair Hetherington; Anne Knowlton; Carl Ng; Jana Sperschneider; Maarja Öpik; Sarah Lennon
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Crossref

Resolving the haplotypes of arbuscular mycorrhizal fungi highlights the role of two nuclear populations in host interactions

2023-01-18 | Preprint
DOI: 10.1101/2023.01.15.524138
Contributors: Jana Sperschneider; Gokalp Yildirir; Yanina Rizzi; Mathu Malar C; Essam Sorwar; Eric CH Chen; Wataru Iwasaki; Elizabeth K. Brauer; Whynn Bosnich; Caroline Gutjahr et al.
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A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungusRhizophagus irregularis

2022-10-21 | Preprint
DOI: 10.1101/2022.10.19.511543
Contributors: Bethan F. Manley; Jaruwatana S. Lotharukpong; Josué Barrera-Redondo; Gokalp Yildirir; Jana Sperschneider; Nicolas Corradi; Uta Paszkowski; Eric A. Miska; Alexandra Dallaire
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Crossref

A chromosome-level, fully phased genome assembly of the oat crown rust fungus Puccinia coronata f. sp. avenae: a resource to enable comparative genomics in the cereal rusts

G3 Genes|Genomes|Genetics
2022-07-29 | Journal article
DOI: 10.1093/g3journal/jkac149
Contributors: Eva C Henningsen; Tim Hewitt; Sheshanka Dugyala; Eric S Nazareno; Erin Gilbert; Feng Li; Shahryar F Kianian; Brian J Steffenson; Peter N Dodds; Jana Sperschneider et al.
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Crossref

EffectorP 3.0: Prediction of Apoplastic and Cytoplasmic Effectors in Fungi and Oomycetes

Molecular Plant-Microbe Interactions®
2022-02 | Journal article
DOI: 10.1094/MPMI-08-21-0201-R
Contributors: Jana Sperschneider; Peter N. Dodds
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Crossref

Long reads and Hi‐C sequencing illuminate the two‐compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

New Phytologist
2022-02 | Journal article
DOI: 10.1111/nph.17842
Contributors: Gökalp Yildirir; Jana Sperschneider; Mathu Malar C; Eric C. H. Chen; Wataru Iwasaki; Calvin Cornell; Nicolas Corradi
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Crossref

A chromosome-level, fully phased genome assembly of the oat crown rust fungus Puccinia coronata f. sp. avenae: a resource to enable comparative genomics in the cereal rusts

2022-01-28 | Preprint
DOI: 10.1101/2022.01.26.477636
Contributors: Eva C. Henningsen; Tim Hewitt; Sheshanka Dugyala; Eric S. Nazareno; Erin Gilbert; Feng Li; Shahryar F. Kianian; Brian J. Steffenson; Peter N. Dodds; Jana Sperschneider et al.
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Crossref

The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

BMC Biology
2021-12 | Journal article
DOI: 10.1186/s12915-021-01123-z
Contributors: Jana Sperschneider; Ashley W. Jones; Jamila Nasim; Bo Xu; Silke Jacques; Chengcheng Zhong; Narayana M. Upadhyaya; Rohit Mago; Yiheng Hu; Melania Figueroa et al.
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Crossref

The crystal structure of SnTox3 from the necrotrophic fungus Parastagonospora nodorum reveals a unique effector fold and provides insight into Snn3 recognition and pro‐domain protease processing of fungal effectors

New Phytologist
2021-09 | Journal article
DOI: 10.1111/nph.17516
Contributors: Megan A. Outram; Yi‐Chang Sung; Daniel Yu; Bayantes Dagvadorj; Sharmin A. Rima; David A. Jones; Daniel J. Ericsson; Jana Sperschneider; Peter S. Solomon; Bostjan Kobe et al.
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Crossref

Long reads and Hi-C sequencing illuminate the two compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

2021-08-12 | Other
DOI: 10.1101/2021.08.12.456011
Contributors: Gokalp Yildirir; Jana Sperschneider; Malar C Mathu; Eric CH Chen; Wataru Iwasaki; Calvin Cornell; Nicolas Corradi
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Crossref

A functional genomics approach to dissect spotted alfalfa aphid resistance in Medicago truncatula.

Scientific reports
2020-12 | Journal article
DOI: 10.1038/s41598-020-78904-z
PMID: 33335168
Contributors: Jacques S; Sperschneider J; Garg G; Thatcher LF; Gao LL; Kamphuis LG; Singh KB
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Distinct Life Histories Impact Dikaryotic Genome Evolution in the Rust Fungus Puccinia striiformis Causing Stripe Rust in Wheat.

Genome biology and evolution
2020-05 | Journal article
DOI: 10.1093/gbe/evaa071
PMID: 32271913
PMC: PMC7250506
Contributors: Schwessinger B; Chen YJ; Tien R; Vogt JK; Sperschneider J; Nagar R; McMullan M; Sicheritz-Ponten T; Sørensen CK; Hovmøller MS et al.
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

The crystal structure of SnTox3 from the necrotrophic fungus Parastagonospora nodorum reveals a unique effector fold and insights into Kex2 protease processing of fungal effectors

2020-05 | Preprint
DOI: 10.1101/2020.05.27.120113
OTHER-ID:

PPR168139
Contributors: Outram MA; Sung Y; Yu D; Dagvadorj B; Rima SA; Jones DA; Ericsson DJ; Sperschneider J; Solomon PS; Kobe B et al.
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Austropuccinia psidii, causing myrtle rust, has a gigabase-sized genome shaped by transposable elements

2020-03-20 | Other
DOI: 10.1101/2020.03.18.996108
Contributors: Peri A Tobias; Benjamin Schwessinger; Cecilia H Deng; Chen Wu; Chongmei Dong; Jana Sperschneider; Ashley Jones; Zhenyan Lou; Peng Zhang; Karanjeet Sandhu et al.
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Crossref

A functional genomics approach to dissect spotted alfalfa aphid resistance in Medicago truncatula

Scientific reports
2020-01 | Journal article
PMC: PMC7746763
Contributors: Jacques S; Sperschneider J; Garg G; Thatcher L; Gao L; Kamphuis L; Singh K
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

An RNAi supplemented diet as a reverse genetics tool to control bluegreen aphid, a major pest of legumes.

Scientific reports
2020-01 | Journal article
DOI: 10.1038/s41598-020-58442-4
PMID: 32005880
PMC: PMC6994723
Contributors: Jacques S; Reidy-Crofts J; Sperschneider J; Kamphuis LG; Gao LL; Edwards OR; Singh KB
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes.

PloS one
2019-12 | Journal article
DOI: 10.1371/journal.pone.0226106
PMID: 31830116
PMC: PMC6907798
Contributors: Wu W; Nemri A; Blackman LM; Catanzariti AM; Sperschneider J; Lawrence GJ; Dodds PN; Jones DA; Hardham AR
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Distinct life histories impact dikaryotic genome evolution in the rust fungus Puccinia striiformis causing stripe rust in wheat

2019-11 | Preprint
DOI: 10.1101/859728
OTHER-ID:

PPR104111
Contributors: Schwessinger B; Chen Y; Tien R; Vogt JK; Sperschneider J; Nagar R; McMullan M; Sicheritz-Ponten T; Sørensen CK; Hovmøller MS et al.
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation.

Nature communications
2019-11 | Journal article
DOI: 10.1038/s41467-019-12927-7
PMID: 31699975
PMC: PMC6838127
Contributors: Li F; Upadhyaya NM; Sperschneider J; Matny O; Nguyen-Phuc H; Mago R; Raley C; Miller ME; Silverstein KAT; Henningsen E et al.
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation

2019-07 | Preprint
DOI: 10.1101/692640
OTHER-ID:

PPR84573
Contributors: Li F; Upadhyaya NM; Sperschneider J; Matny O; Nguyen-Phuc H; Mago R; Raley C; Miller ME; Silverstein KA; Henningsen E et al.
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Machine learning in plant-pathogen interactions: empowering biological predictions from field-scale to genome-scale.

The New phytologist
2019-03 | Journal article
DOI: 10.1111/nph.15771
PMID: 30834534
Contributors: Sperschneider J
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central
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Identification and profiling of narrow-leafed lupin (Lupinus angustifolius) microRNAs during seed development.

BMC genomics
2019-02 | Journal article
DOI: 10.1186/s12864-019-5521-8
PMID: 30764773
PMC: PMC6376761
Contributors: DeBoer K; Melser S; Sperschneider J; Kamphuis LG; Garg G; Gao LL; Frick K; Singh KB
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

The stem rust fungus Puccinia graminis f. sp. tritici induces waves of small RNAs with opposing profiles during wheat infection

2018-11 | Other
DOI: 10.1101/469338
OTHER-ID:

PPR61929
Contributors: Sperschneider J; Jacques S; Xu B; Upadhyaya N; Mago R; Singh K; Stone E; Wang M; Dodds P; Taylor J
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

Molecular Plant Pathology
2018-09 | Journal article
DOI: 10.1111/mpp.12682
Contributors: Jana Sperschneider; Peter N. Dodds; Donald M. Gardiner; Karam B. Singh; Jennifer M. Taylor
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Crossref

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity.

mBio
2018-02 | Journal article
DOI: 10.1128/mBio.02275-17
PMID: 29463659
PMC: PMC5821087
Contributors: Schwessinger B; Sperschneider J; Cuddy WS; Garnica DP; Miller ME; Taylor JM; Dodds PN; Figueroa M; Park RF; Rathjen JP
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust.

mBio
2018-02 | Journal article
DOI: 10.1128/mBio.01650-17
PMID: 29463655
PMC: PMC5821079
Contributors: Miller ME; Zhang Y; Omidvar V; Sperschneider J; Schwessinger B; Raley C; Palmer JM; Garnica D; Upadhyaya N; Rathjen J et al.
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

2018-01 | Preprint
DOI: 10.1101/250464
OTHER-ID:

PPR15407
Contributors: Sperschneider J; Dodds PN; Gardiner DM; Singh KB; Taylor JM
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Computational Methods for Predicting Effectors in Rust Pathogens.

Methods in molecular biology (Clifton, N.J.)
2017 | Journal article
DOI: 10.1007/978-1-4939-7249-4_7
PMID: 28856642
Contributors: Sperschneider J; Dodds PN; Taylor JM; Duplessis S
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning.

The New phytologist
2017-12 | Journal article
DOI: 10.1111/nph.14946
PMID: 29243824
Contributors: Sperschneider J; Dodds PN; Singh KB; Taylor JM
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat.

Science (New York, N.Y.)
2017-12 | Journal article
DOI: 10.1126/science.aao4810
PMID: 29269475
Contributors: Chen J; Upadhyaya NM; Ortiz D; Sperschneider J; Li F; Bouton C; Breen S; Dong C; Xu B; Zhang X et al.
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central
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Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors.

Scientific reports
2017-09 | Journal article
DOI: 10.1038/s41598-017-10405-y
PMID: 28874693
PMC: PMC5585356
Contributors: Anderson JP; Sperschneider J; Win J; Kidd B; Yoshida K; Hane J; Saunders DGO; Singh KB
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungusPuccinia striiformisf. sp.triticireveals high inter-haplotype diversity

2017-09-22 | Preprint
DOI: 10.1101/192435
Contributors: Benjamin Schwessinger; Jana Sperschneider; William S. Cuddy; Diana P. Garnica; Marisa E. Miller; Jennifer M. Taylor; Peter N. Dodds; Melania Figueroa; Park F. Robert; John Rathjen
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Crossref

ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning

2017-08 | Preprint
DOI: 10.1101/182428
OTHER-ID:

PPR20561
Contributors: Sperschneider J; Dodds PN; Singh KB; Taylor JM
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

De novo assembly and phasing of dikaryotic genomes from two isolates of Puccinia coronata f. sp. avenae, the causal agent of oat crown rust

2017-08 | Preprint
DOI: 10.1101/179226
OTHER-ID:

PPR15881
Contributors: Miller ME; Zhang Y; Omidvar V; Sperschneider J; Schwessinger B; Raley C; Palmer JM; Garnica D; Upadhyaya N; Rathjen J et al.
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell.

Scientific reports
2017-03 | Journal article
DOI: 10.1038/srep44598
PMID: 28300209
PMC: PMC5353544
Contributors: Sperschneider J; Catanzariti AM; DeBoer K; Petre B; Gardiner DM; Singh KB; Dodds PN; Taylor JM
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Changing the Game: Using Integrative Genomics to Probe Virulence Mechanisms of the Stem Rust Pathogen Puccinia graminis f. sp. tritici.

2016 | Journal article
DOI: 10.3389/fpls.2016.00205
PMID: 26941766
PMC: PMC4764693
Contributors: Figueroa M; Upadhyaya NM; Sperschneider J; Park RF; Szabo LJ; Steffenson B; Ellis JG; Dodds PN
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors.

2016 | Journal article
DOI: 10.1186/s12864-016-2486-8
PMID: 26945779
PMC: PMC4779268
Contributors: Williams AH; Sharma M; Thatcher LF; Azam S; Hane JK; Sperschneider J; Kidd BN; Anderson JP; Ghosh R; Garg G et al.
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

EffectorP: predicting fungal effector proteins from secretomes using machine learning.

2016-04 | Journal article
DOI: 10.1111/nph.13794
PMID: 26680733
Contributors: Sperschneider J; Gardiner DM; Dodds PN; Tini F; Covarelli L; Singh KB; Manners JM; Taylor JM
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.

2015 | Journal article
DOI: 10.3389/fpls.2015.01168
PMID: 26779196
PMC: PMC4688413
Contributors: Sperschneider J; Williams AH; Hane JK; Singh KB; Taylor JM
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity.

2015-06 | Journal article
DOI: 10.1093/gbe/evv092
PMID: 25994930
PMC: PMC4494044
Contributors: Sperschneider J; Gardiner DM; Thatcher LF; Lyons R; Singh KB; Manners JM; Taylor JM
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Advances and challenges in computational prediction of effectors from plant pathogenic fungi.

2015-05 | Journal article
DOI: 10.1371/journal.ppat.1004806
PMID: 26020524
PMC: PMC4447458
Contributors: Sperschneider J; Dodds PN; Gardiner DM; Manners JM; Singh KB; Taylor JM
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes.

2014 | Journal article
DOI: 10.3389/fpls.2014.00759
PMID: 25620970
PMC: PMC4288056
Contributors: Upadhyaya NM; Garnica DP; Karaoglu H; Sperschneider J; Nemri A; Xu B; Mago R; Cuomo CA; Rathjen JP; Park RF et al.
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors.

2014 | Journal article
DOI: 10.3389/fpls.2014.00372
PMID: 25225496
PMC: PMC4150398
Contributors: Sperschneider J; Ying H; Dodds PN; Gardiner DM; Upadhyaya NM; Singh KB; Manners JM; Taylor JM
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8.

2014-05 | Journal article
DOI: 10.1371/journal.pgen.1004281
PMID: 24810276
PMC: PMC4014442
Contributors: Hane JK; Anderson JP; Williams AH; Sperschneider J; Singh KB
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi.

2013 | Journal article
DOI: 10.1186/1471-2164-14-807
PMID: 24252298
PMC: PMC3914424
Contributors: Sperschneider J; Gardiner DM; Taylor JM; Hane JK; Singh KB; Manners JM
Source: Self-asserted source
Jana Sperschneider via Europe PubMed Central
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