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Scopus Author ID: 57214874718

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Australia

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Employment (1)

Queensland University of Technology: Brisbane, QLD, AU

2023-11-06 to 2024-11-05 | Bioinformatics specialist (Centre for Microbiome Research)
Employment
Source: Self-asserted source
Yibi Chen

Education and qualifications (4)

The University of Queensland School of Chemistry and Molecular Biosciences: Brisbane, QLD, AU

2019 to 2023 | PhD student (Australian Centre for Ecogenomics)
Education
Source: Self-asserted source
Yibi Chen

University of Queensland: Brisbane, QLD, AU

2017-07-20 to 2019-07-01 | Master (SCMB)
Education
Source: Self-asserted source
Yibi Chen

Yunnan University: Kunming, Yunnan, CN

2015 to 2017 | Master (college of agriculture)
Education
Source: Self-asserted source
Yibi Chen

Nankai University: Tianjin, Tianjin, CN

2009-09-01 to 2013-06-30 | Bachelor (College of Life Science)
Education
Source: Self-asserted source
Yibi Chen

Works (18)

Whole-genome duplication in an algal symbiont bolsters coral heat tolerance

Science Advances
2024-07-19 | Journal article
DOI: 10.1126/sciadv.adn2218
Contributors: Katherine E. Dougan; Anthony J. Bellantuono; Tim Kahlke; Raffaela M. Abbriano; Yibi Chen; Sarah Shah; Camila Granados-Cifuentes; Madeleine J. H. van Oppen; Debashish Bhattacharya; David J. Suggett et al.
Source: check_circle
Crossref

Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates

2024-04-10 | Other
DOI: 10.1093/ismejo/wrae059
Contributors: Cheong Xin Chan; Sarah Shah; Katherine E. Dougan; Yibi Chen; Rosalyn Lo; Gemma Laird; Michael D. A. Fortuin; Subash Rai; Valentine Murigneux; Anthony J. Bellantuono et al.
Source: check_circle
Crossref

Assessing complex gene and genome features of dinoflagellates

2024-01-24 | Dissertation or Thesis
DOI: 10.14264/944e29c
Source: check_circle
Crossref

Genome-wide transcriptome analysis reveals the diversity and function of long non-coding RNAs in dinoflagellates

NAR Genomics and Bioinformatics
2024-01-05 | Journal article
DOI: 10.1093/nargab/lqae016
Contributors: Yibi Chen; Katherine E Dougan; Quan Nguyen; Debashish Bhattacharya; Cheong Xin Chan
Source: check_circle
Crossref
grade
Preferred source (of 4)‎

Multi-omics analysis reveals the molecular response to heat stress in a “red tide” dinoflagellate

Genome Biology
2023-11-23 | Journal article
DOI: 10.1186/s13059-023-03107-4
Contributors: Katherine E. Dougan; Zhi-Luo Deng; Lars Wöhlbrand; Carsten Reuse; Boyke Bunk; Yibi Chen; Juliane Hartlich; Karsten Hiller; Uwe John; Jana Kalvelage et al.
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Gene duplication is the primary driver of intraspecific genomic divergence in coral algal symbionts

Open Biology
2023-09 | Journal article
DOI: 10.1098/rsob.230182
Contributors: Sarah Shah; Katherine E. Dougan; Yibi Chen; Debashish Bhattacharya; Cheong Xin Chan
Source: check_circle
Crossref
grade
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Massive genome reduction occurred prior to the origin of coral algal symbionts

2023-03-25 | Preprint
DOI: 10.1101/2023.03.24.534093
Contributors: Sarah Shah; Katherine E. Dougan; Yibi Chen; Rosalyn Lo; Gemma Laird; Michael D. A. Fortuin; Subash K. Rai; Valentine Murigneux; Anthony J. Bellantuono; Mauricio Rodriguez-Lanetty et al.
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Crossref
grade
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Alignment-Free Analysis of Whole-Genome Sequences From Symbiodiniaceae Reveals Different Phylogenetic Signals in Distinct Regions

Frontiers in Plant Science
2022 | Journal article
DOI: 10.3389/fpls.2022.815714
EID:

2-s2.0-85132622357

Part of ISSN: 1664462X
Contributors: Lo, R.; Dougan, K.E.; Chen, Y.; Shah, S.; Bhattacharya, D.; Chan, C.X.
Source: Self-asserted source
Yibi Chen via Scopus - Elsevier

Genome-Guided Analysis of Seven Weed Species Reveals Conserved Sequence and Structural Features of Key Gene Targets for Herbicide Development

Frontiers in Plant Science
2022 | Journal article
DOI: 10.3389/fpls.2022.909073
EID:

2-s2.0-85134165220

Part of ISSN: 1664462X
Contributors: Shah, S.; Lonhienne, T.; Murray, C.-E.; Chen, Y.; Dougan, K.E.; Low, Y.S.; Williams, C.M.; Schenk, G.; Walter, G.H.; Guddat, L.W. et al.
Source: Self-asserted source
Yibi Chen via Scopus - Elsevier

Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts

Trends in Microbiology
2022 | Journal article
DOI: 10.1016/j.tim.2022.02.001
EID:

2-s2.0-85125329539

Part of ISSN: 18784380 0966842X
Contributors: Dougan, K.E.; González-Pech, R.A.; Stephens, T.G.; Shah, S.; Chen, Y.; Ragan, M.A.; Bhattacharya, D.; Chan, C.X.
Source: Self-asserted source
Yibi Chen via Scopus - Elsevier

Improved Cladocopium goreaui Genome Assembly Reveals Features of a Facultative Coral Symbiont and the Complex Evolutionary History of Dinoflagellate Genes

Microorganisms
2022-08-17 | Journal article
DOI: 10.3390/microorganisms10081662
Contributors: Yibi Chen; Sarah Shah; Katherine E. Dougan; Madeleine J. H. van Oppen; Debashish Bhattacharya; Cheong Xin Chan
Source: check_circle
Crossref
grade
Preferred source (of 6)‎

Whole-genome duplication in an algal symbiont bolsters coral heat tolerance

2022-04-11 | Preprint
DOI: 10.1101/2022.04.10.487810
Contributors: Katherine E. Dougan; Anthony J. Bellantuono; Tim Kahlke; Raffaela M. Abbriano; Yibi Chen; Sarah Shah; Camila Granados-Cifuentes; Madeleine J. H. van Oppen; Debashish Bhattacharya; David J. Suggett et al.
Source: check_circle
Crossref
grade
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Nuclear genome of a pedinophyte pinpoints genomic innovation and streamlining in the green algae

New Phytologist
2022-03 | Journal article
DOI: 10.1111/nph.17926
Contributors: Sonja I. Repetti; Cintia Iha; Kavitha Uthanumallian; Christopher J. Jackson; Yibi Chen; Cheong Xin Chan; Heroen Verbruggen
Source: check_circle
Crossref
grade
Preferred source (of 5)‎

Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium

BMC Biology
2021 | Journal article
DOI: 10.1186/s12915-021-00994-6
EID:

2-s2.0-85104340569

Part of ISSN: 17417007
Contributors: González-Pech, R.A.; Stephens, T.G.; Chen, Y.; Mohamed, A.R.; Cheng, Y.; Shah, S.; Dougan, K.E.; Fortuin, M.D.A.; Lagorce, R.; Burt, D.W. et al.
Source: Self-asserted source
Yibi Chen via Scopus - Elsevier
grade
Preferred source (of 6)‎

Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium

Current Biology
2021 | Journal article
DOI: 10.1016/j.cub.2021.01.018
EID:

2-s2.0-85101201235

Part of ISSN: 18790445 09609822
Contributors: Iha, C.; Dougan, K.E.; Varela, J.A.; Avila, V.; Jackson, C.J.; Bogaert, K.A.; Chen, Y.; Judd, L.M.; Wick, R.; Holt, K.E. et al.
Source: Self-asserted source
Yibi Chen via Scopus - Elsevier
grade
Preferred source (of 4)‎

Comparative Genomics Supports That Brazilian Bioethanol Saccharomyces cerevisiae Comprise a Unified Group of Domesticated Strains Related to Cachaça Spirit Yeasts

Frontiers in Microbiology
2021-04-15 | Journal article
DOI: 10.3389/fmicb.2021.644089
DOI: 10.1101/2020.12.15.422965
EID:

2-s2.0-85104969685

Part of ISSN: 1664302X
EID:

2-s2.0-85100090967

Part of ISSN: 26928205
Source: Self-asserted source
Yibi Chen
grade
Preferred source (of 3)‎

Evidence That Inconsistent Gene Prediction Can Mislead Analysis of Dinoflagellate Genomes

Journal of Phycology
2020 | Journal article
DOI: 10.1111/jpy.12947
EID:

2-s2.0-85079358178

Part of ISSN: 15298817 00223646
Contributors: Chen, Y.; González-Pech, R.A.; Stephens, T.G.; Bhattacharya, D.; Chan, C.X.
Source: Self-asserted source
Yibi Chen via Scopus - Elsevier
grade
Preferred source (of 4)‎

Sex in Symbiodiniaceae dinoflagellates: genomic evidence for independent loss of the canonical synaptonemal complex

Scientific Reports
2020-12 | Journal article
DOI: 10.1038/s41598-020-66429-4
Part of ISSN: 2045-2322
Source: Self-asserted source
Yibi Chen
grade
Preferred source (of 2)‎
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