Personal information

No personal information available

Activities

Collapse all

Works (42)

Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts.

Nature
2023-12 | Journal article
DOI: 10.1038/s41586-023-06952-2
PMID: 38122820
PMC: PMC10830410
Contributors: Ferretti L; Wymant C; Petrie J; Tsallis D; Kendall M; Ledda A; Di Lauro F; Fowler A; Di Francia A; Panovska-Griffiths J et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Directional predictions of HIV transmission with optimised genomics in cohorts of serodiscordant couples

2023-10 | Preprint
DOI: 10.1101/2023.10.19.563197
PPR: PPR745996
Contributors: Zhao L; Hall M; Wymant C; Abeler-Dörner L; Otecko N; MacIntyre-Cockett G; Chaudron SE; Thomson L; Golubchik T; Lingappa J et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Learning patterns of HIV-1 co-resistance to broadly neutralizing antibodies with reduced subtype bias using multi-task learning

2023-09 | Preprint
DOI: 10.1101/2023.09.28.559724
PPR: PPR734381
Contributors: Igiraneza AB; Zacharopoulou P; Hinch R; Wymant C; Abeler-Dörner L; Frater J; Fraser C
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1.

The Journal of antimicrobial chemotherapy
2023-03 | Journal article
DOI: 10.1093/jac/dkac430
PMID: 36738248
Contributors: Balakrishna S; Loosli T; Zaheri M; Frischknecht P; Huber M; Kusejko K; Yerly S; Leuzinger K; Perreau M; Ramette A et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year.

Nature communications
2023-02 | Journal article
DOI: 10.1038/s41467-023-36495-z
PMID: 36813770
PMC: PMC9947127
Contributors: Kendall M; Tsallis D; Wymant C; Di Francia A; Balogun Y; Didelot X; Ferretti L; Fraser C
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models.

Philosophical transactions. Series A, Mathematical, physical, and engineering sciences
2022-08 | Journal article
DOI: 10.1098/rsta.2021.0304
PMID: 35965459
PMC: PMC9376717
Contributors: Hinch R; Panovska-Griffiths J; Probert WJM; Ferretti L; Wymant C; Di Lauro F; Baya N; Ghafari M; Abeler-Dörner L; Fraser C
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions.

Philosophical transactions. Series A, Mathematical, physical, and engineering sciences
2022-08 | Journal article
DOI: 10.1098/rsta.2021.0315
PMID: 35965458
PMC: PMC9376711
Contributors: Panovska-Griffiths J; Swallow B; Hinch R; Cohen J; Rosenfeld K; Stuart RM; Ferretti L; Di Lauro F; Wymant C; Izzo A et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

HIV-phyloTSI: Subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data

2022-05 | Preprint
DOI: 10.1101/2022.05.15.22275117
PPR: PPR495705
Contributors: Golubchik T; Abeler-Dörner L; Hall M; Wymant C; Bonsall D; Macintyre-Cockett G; Thomson L; Baeten JM; Celum CL; Galiwango RM et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load.

Virus evolution
2022-03 | Journal article
DOI: 10.1093/ve/veac022
PMID: 35402002
PMC: PMC8986633
Contributors: Zhao L; Wymant C; Blanquart F; Golubchik T; Gall A; Bakker M; Bezemer D; Hall M; Ong SH; Albert J et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

A highly virulent variant of HIV-1 circulating in the Netherlands.

Science (New York, N.Y.)
2022-02 | Journal article
DOI: 10.1126/science.abk1688
PMID: 35113714
Contributors: Wymant C; Bezemer D; Blanquart F; Ferretti L; Gall A; Hall M; Golubchik T; Bakker M; Ong SH; Zhao L et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions

2022-01 | Preprint
DOI: 10.1101/2021.12.30.21267090
PPR: PPR438259
Contributors: Panovska-Griffiths J; Swallow B; Hinch R; Cohen J; Rosenfeld K; Stuart RM; Ferretti L; Lauro FD; Wymant C; Izzo A et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Modelling the effectiveness and social costs of daily lateral flow antigen tests versus quarantine in preventing onward transmission of COVID-19 from traced contacts

2021-08 | Preprint
DOI: 10.1101/2021.08.06.21261725
PPR: PPR380185
Contributors: Ferretti L; Wymant C; Nurtay A; Zhao L; Hinch R; Bonsall D; Kendall M; Masel J; Bell J; Hopkins S et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

OpenABM-Covid19-An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing.

PLoS computational biology
2021-07 | Journal article
DOI: 10.1371/journal.pcbi.1009146
PMID: 34252083
PMC: PMC8328312
Contributors: Hinch R; Probert WJM; Nurtay A; Kendall M; Wymant C; Hall M; Lythgoe K; Bulas Cruz A; Zhao L; Stewart A et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

The epidemiological impact of the NHS COVID-19 app.

Nature
2021-05 | Journal article
DOI: 10.1038/s41586-021-03606-z
PMID: 33979832
Contributors: Wymant C; Ferretti L; Tsallis D; Charalambides M; Abeler-Dörner L; Bonsall D; Hinch R; Kendall M; Milsom L; Ayres M et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Time to evaluate COVID-19 contact-tracing apps.

Nature medicine
2021-03 | Journal article
DOI: 10.1038/s41591-021-01236-6
PMID: 33589822
Contributors: Colizza V; Grill E; Mikolajczyk R; Cattuto C; Kucharski A; Riley S; Kendall M; Lythgoe K; Bonsall D; Wymant C et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Epidemiological and public health requirements for COVID-19 contact tracing apps and their evaluation

2021-02 | Preprint
PPR: PPR310767
Contributors: Colizza V; Grill E; Mikolajczyk R; Cattuto C; Kucharski A; Riley S; Kendall M; Lythgoe K; Abeler-Dörner L; Wymant C et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Evaluation of Phylogenetic Methods for Inferring the Direction of Human Immunodeficiency Virus (HIV) Transmission: HIV Prevention Trials Network (HPTN) 052.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
2021-01 | Journal article
DOI: 10.1093/cid/ciz1247
PMID: 31922537
PMC: PMC7823077
Contributors: Zhang Y; Wymant C; Laeyendecker O; Grabowski MK; Hall M; Hudelson S; Piwowar-Manning E; McCauley M; Gamble T; Hosseinipour MC et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Epidemiological changes on the Isle of Wight after the launch of the NHS Test and Trace programme: a preliminary analysis.

The Lancet. Digital health
2020-10 | Journal article
DOI: 10.1016/s2589-7500(20)30241-7
PMID: 33078140
PMC: PMC7556784
Contributors: Kendall M; Milsom L; Abeler-Dörner L; Wymant C; Ferretti L; Briers M; Holmes C; Bonsall D; Abeler J; Fraser C
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

The Timing of COVID-19 Transmission

2020-10 | Preprint
DOI: 10.2139/ssrn.3716879
PPR: PPR240419
Contributors: Ferretti L; Ledda A; Wymant C; Zhao L; Ledda V; Dörner LA; Kendall M; Nurtay A; Cheng H; Ng T et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

A Comprehensive Genomics Solution for HIV Surveillance and Clinical Monitoring in Low-Income Settings.

Journal of clinical microbiology
2020-09 | Journal article
DOI: 10.1128/jcm.00382-20
PMID: 32669382
PMC: PMC7512176
Contributors: Bonsall D; Golubchik T; de Cesare M; Limbada M; Kosloff B; MacIntyre-Cockett G; Hall M; Wymant C; Ansari MA; Abeler-Dörner L et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

OpenABM-Covid19 - an agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing

2020-09 | Preprint
DOI: 10.1101/2020.09.16.20195925
PPR: PPR217147
Contributors: Hinch R; Probert WJM; Nurtay A; Kendall M; Wymant C; Hall M; Lythgoe K; Cruz AB; Zhao L; Stewart A et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

The timing of COVID-19 transmission

2020-09 | Preprint
DOI: 10.1101/2020.09.04.20188516
PPR: PPR210873
Contributors: Ferretti L; Ledda A; Wymant C; Zhao L; Ledda V; Abeler-Dörner L; Kendall M; Nurtay A; Cheng H; Ng T et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

COVID-19 incidence and R decreased on the Isle of Wight after the launch of the Test, Trace, Isolate programme

2020-07 | Preprint
DOI: 10.1101/2020.07.12.20151753
PPR: PPR186997
Contributors: Kendall M; Milsom L; Abeler-Dörner L; Wymant C; Ferretti L; Briers M; Holmes C; Bonsall D; Abeler J; Fraser C
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing

2020-03 | Preprint
DOI: 10.1101/2020.03.08.20032946
PPR: PPR117007
Contributors: Ferretti L; Wymant C; Kendall M; Zhao L; Nurtay A; Abeler-Dörner L; Parker M; Bonsall D; Fraser C
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing.

Science (New York, N.Y.)
2020-03 | Journal article
DOI: 10.1126/science.abb6936
PMID: 32234805
PMC: PMC7164555
Contributors: Ferretti L; Wymant C; Kendall M; Zhao L; Nurtay A; Abeler-Dörner L; Parker M; Bonsall D; Fraser C
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda.

The lancet. HIV
2020-01 | Journal article
DOI: 10.1016/s2352-3018(19)30378-9
PMID: 31953184
PMC: PMC7167508
Contributors: Ratmann O; Kagaayi J; Hall M; Golubchick T; Kigozi G; Xi X; Wymant C; Nakigozi G; Abeler-Dörner L; Bonsall D et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis.

Nature communications
2019-03 | Journal article
DOI: 10.1038/s41467-019-09139-4
PMID: 30926780
PMC: PMC6441045
Contributors: Ratmann O; Grabowski MK; Hall M; Golubchik T; Wymant C; Abeler-Dörner L; Bonsall D; Hoppe A; Brown AL; de Oliveira T et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Airborne in the era of climate change.

Science (New York, N.Y.)
2019-01 | Journal article
DOI: 10.1126/science.aaw1145
PMID: 30655436
Contributors: Jean K; Wymant C
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission.

Virus evolution
2019-01 | Journal article
DOI: 10.1093/ve/vey038
PMID: 30723550
PMC: PMC6354028
Contributors: Thompson RN; Wymant C; Spriggs RA; Raghwani J; Fraser C; Lythgoe KA
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission

2018-09 | Preprint
DOI: 10.1101/404913
PPR: PPR55546
Contributors: Thompson RN; Wymant C; Spriggs RA; Raghwani J; Fraser C; Lythgoe KA
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

A comprehensive genomics solution for HIV surveillance and clinical monitoring in a global health setting

2018-08 | Preprint
DOI: 10.1101/397083
PPR: PPR47505
Contributors: Bonsall D; Golubchik T; Cesare Md; Limbada M; Kosloff B; MacIntyre-Cockett G; Hall M; Wymant C; Ansari MA; Abeler-Dörner L et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

The evolution of subtype B HIV-1 tat in the Netherlands during 1985-2012.

Virus research
2018-04 | Journal article
DOI: 10.1016/j.virusres.2018.04.008
PMID: 29654800
Contributors: van der Kuyl AC; Vink M; Zorgdrager F; Bakker M; Wymant C; Hall M; Gall A; Blanquart F; Berkhout B; Fraser C et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity.

Molecular biology and evolution
2018-03 | Journal article
DOI: 10.1093/molbev/msx304
PMID: 29186559
PMC: PMC5850600
Contributors: Wymant C; Hall M; Ratmann O; Bonsall D; Golubchik T; de Cesare M; Gall A; Cornelissen M; Fraser C; STOP-HCV Consortium et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

Virus evolution
2018-01 | Journal article
DOI: 10.1093/ve/vey007
PMID: 29876136
PMC: PMC5961307
Contributors: Wymant C; Blanquart F; Golubchik T; Gall A; Bakker M; Bezemer D; Croucher NJ; Hall M; Hillebregt M; Ong SH et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Workup of Human Blood Samples for Deep Sequencing of HIV-1 Genomes.

Methods in molecular biology (Clifton, N.J.)
2018-01 | Journal article
DOI: 10.1007/978-1-4939-7683-6_5
PMID: 29492886
Contributors: Cornelissen M; Gall A; van der Kuyl A; Wymant C; Blanquart F; Fraser C; Berkhout B
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

PLoS biology
2017-07 | Journal article
DOI: 10.1371/journal.pbio.1002608
PMID: 28704367
PMC: PMC5509086
Contributors: Blanquart F; Wymant C; Cornelissen M; Gall A; Bakker M; Bezemer D; Hall M; Hillebregt M; Ong SH; Albert J et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

PHYLOSCANNER: Inferring Transmission from Within‐ and Between-Host Pathogen Genetic Diversity

2017-06 | Preprint
DOI: 10.1101/157768
PPR: PPR23605
Contributors: Wymant C; Hall M; Ratmann O; Bonsall D; Golubchik T; de Cesare M; Gall A; Cornelissen M; Fraser C
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

PLoS biology
2017-06 | Journal article
DOI: 10.1371/journal.pbio.2001855
PMID: 28604782
PMC: PMC5467800
Contributors: Blanquart F; Wymant C; Cornelissen M; Gall A; Bakker M; Bezemer D; Hall M; Hillebregt M; Ong SH; Albert J et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences.

AIDS research and human retroviruses
2017-05 | Journal article
DOI: 10.1089/aid.2017.0061
PMID: 28540766
PMC: PMC5597042
Contributors: Ratmann O; Wymant C; Colijn C; Danaviah S; Essex M; Frost SDW; Gall A; Gaiseitsiwe S; Grabowski M; Gray R et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Easy and Accurate Reconstruction of Whole HIV Genomes from Short-Read Sequence Data

2016-12 | Preprint
DOI: 10.1101/092916
PPR: PPR9012
Contributors: Wymant C; Blanquart F; Gall A; Bakker M; Bezemer D; Croucher NJ; Golubchik T; Hall M; Hillebregt M; Ong SH et al.
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Protein structural robustness to mutations: an in silico investigation.

Physical chemistry chemical physics : PCCP
2016-05 | Journal article
DOI: 10.1039/c5cp06091e
PMID: 26688116
Contributors: Achoch M; Dorantes-Gilardi R; Wymant C; Feverati G; Salamatian K; Vuillon L; Lesieur C
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Horizontal DNA Transfer Mechanisms of Bacteria as Weapons of Intragenomic Conflict.

PLoS biology
2016-03 | Journal article
DOI: 10.1371/journal.pbio.1002394
PMID: 26934590
PMC: PMC4774983
Contributors: Croucher NJ; Mostowy R; Wymant C; Turner P; Bentley SD; Fraser C
Source: Self-asserted source
Chris Wymant via Europe PubMed Central

Peer review (1 review for 1 publication/grant)

Review activity for Nature communications (1)
How many people are using ORCID?