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Biophysics, Single-molecule manipulation and visualisation, DNA-protein interaction
United States

Biography

Trained as a biophysicist, my work focuses on decoding two essential processes in viral life cycles—DNA replication and packaging—from a single-molecule perspective. By developing and applying advanced single-molecule manipulation, visualization, and structural dynamics approaches, I aim to expand our understanding of living systems and ultimately inform strategies for treating genetic diseases and preventing future viral threats.

I currently work as a postdoctoral researcher in Professor Carlos Bustamante’s laboratory at UC Berkeley, investigating how a virally encoded ATPase motor propels the viral genome into a preassembled container—a mechanism utilized by many dsDNA bacteriophages and their eukaryotic counterparts (herpes-, adeno-, and poxviruses). My broader goal is to elucidate how these packaging machines harness ATP binding, hydrolysis, and release to generate mechanical force.

Prior to this, I obtained my PhD and conducted postdoctoral training in Gijs Wuite’s laboratory at Vrije Universiteit Amsterdam, where I developed and applied correlated optical tweezers and fluorescence microscopy to observe replication dynamics at higher resolution using a simplified T7 system to revisit DNA replication. One of our most interesting findings showed that replication is far more dynamic than previously assumed, leading us to propose a “decentralized model” (see our recent Nature Communications publication). Earlier in my career, I earned an MSc at the University of the Chinese Academy of Sciences under Professors Zhiguo Su and Yongdong Liu, focusing on novel long-acting biopharmaceuticals through PEGylation and albumin-binding domains.

Activities

Employment (3)

University of California, Berkeley: Berkeley, US

2025-01-13 to present | Postdoctoral Scientist (Department of Physics)
Employment
Source: Self-asserted source
Longfu Xu

Vrije Universiteit Amsterdam: Amsterdam, The Netherlands, NL

2023-11-10 to 2024-12-31 | Postdoc researcher (Department of Physics)
Employment
Source: Self-asserted source
Longfu Xu

Vrije Universiteit Amsterdam: Amsterdam, Noord-Holland, NL

2017-10-01 to 2023-11-09 | PhD Candidate (Department of Physics)
Employment
Source: Self-asserted source
Longfu Xu

Education and qualifications (2)

Vrije Universiteit Amsterdam: Amsterdam, Noord-Holland, NL

2017-10-01 to 2023-11-09 | PhD candidate (Department of Physics)
Education
Source: Self-asserted source
Longfu Xu

Chinese Academy of Sciences: Beijing, Beijing, CN

2014-09-01 to 2017-07-01 | Master Student (State Key laboratory of Biochemical Engineering)
Education
Source: Self-asserted source
Longfu Xu

Funding (1)

PhD Scholoarship

2017-10 to 2021-10 | Grant
China Scholarship Council (Beijing, Beijing, CN)
GRANT_NUMBER:

201704910912

Source: Self-asserted source
Longfu Xu

Works (9)

DNA polymerase actively and sequentially displaces single-stranded DNA-binding proteins

2025-03-11 | Preprint
Contributors: Longfu Xu; Shikai Jin; Mia Urem; Seung-Joo Lee; Meindert H. Lamers; Xun Chen; Peter Wolynes; Gijs J. L. Wuite
Source: check_circle
Crossref

Mapping fast DNA polymerase exchange during replication

Nature Communications
2024-06-22 | Journal article
Contributors: Longfu Xu; Matthew T. J. Halma; Gijs J. L. Wuite
Source: check_circle
Crossref

Regulation of T7 gp2.5 binding dynamics by its C-terminal tail, template conformation and sequence

Nucleic Acids Research
2023-07-21 | Journal article
Contributors: Longfu Xu; Jordi Cabanas-Danés; Matthew T J Halma; Iddo Heller; Sarah A Stratmann; Antoine M van Oijen; Seung-Joo Lee; Erwin J G Peterman; Gijs J L Wuite
Source: check_circle
Crossref

Unravelling How Single-Stranded DNA Binding Protein Coordinates DNA Metabolism Using Single-Molecule Approaches

International Journal of Molecular Sciences
2023-02 | Journal article | Author
Contributors: Longfu Xu; Matthew Halma; gijs wuite
Source: check_circle
Multidisciplinary Digital Publishing Institute
grade
Preferred source (of 2)‎

High-resolution imaging of the interplay of replicative proteins on DNA using correlative tweezers fluorescence microscopy

Biophysical Journal
2022 | Journal article
Contributors: Xu, Longfu; Halma, Matthew T. J.; Wuite, Gijs J. L.
Source: check_circle
Web of Science Researcher Profile Sync

Single-Molecule Movies of the Interplay between DNA Polymerase and Single Strand DNA Binding (SSB) Protein

Biophysical Journal
2019 | Journal article
Contributors: Xu, Longfu; Bakx, Julia; Acar, Seyda; Biebricher, Andreas; Peterman, Erwin J.; Wuite, Gijs J.
Source: check_circle
Web of Science Researcher Profile Sync

Oxidized catechol-derived poly (ethylene glycol) for thiol-specific conjugation

Reactive and Functional Polymers
2017 | Journal article
Contributors: Xu, Longfu; Zhang, Chun; Wang, Qi; Guo, Fangxia; Li, Zenglan; Liu, Yongdong; Su, Zhiguo
Source: check_circle
Web of Science Researcher Profile Sync
grade
Preferred source (of 2)‎

Purification and assembling a fused capsid protein as an enterovirus 71 vaccine candidate from inclusion bodies to pentamer-based nanoparticles

Biochemical Engineering Journal
2017 | Journal article
Contributors: Xue, Ling; Liu, Jiangning; Wang, Qi; Zhang, Chun; Xu, Longfu; Luo, Jian; Wang, Jian; Qin, Chuan; Liu, Yongdong; Su, Zhiguo
Source: check_circle
Web of Science Researcher Profile Sync
grade
Preferred source (of 2)‎

Purification and characterization of a long-acting ciliary neurotrophic factor via genetically fused with an albumin-binding domain

Protein Expression and Purification
2017 | Journal article
Contributors: Xu, Longfu; Zhang, Chun; Liu, Liping; Zhang, Yao; Wang, Qi; Wang, Jian; Liu, Yongdong; Su, Zhiguo
Source: check_circle
Web of Science Researcher Profile Sync
grade
Preferred source (of 3)‎

Peer review (2 reviews for 2 publications/grants)

Review activity for Nature communications (1)
Review activity for Physical review. (1)