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Employment (2)

USDA-ARS: Columbia, Mo, US

2020-01-06 to present | Research Geneticist
Employment
Source: Self-asserted source
Jacob D. Washburn

Cornell University: Ithaca, NY, US

2017-06-01 to 2020-01-05 | Postdoctoral Associate (Institute of Biotechnology)
Employment
Source: Self-asserted source
Jacob D. Washburn

Education and qualifications (3)

University of Missouri Columbia: Columbia, MO, US

2012-08-01 to 2017-05-13 | PhD (Biological Sciences)
Education
Source: Self-asserted source
Jacob D. Washburn

Texas A&M University: College Station, TX, US

2010-08-01 to 2012-08-01 | M.S
Education
Source: Self-asserted source
Jacob D. Washburn

Brigham Young University: Provo, UT, US

2007-06-01 to 2010-05-01 | B.S
Education
Source: Self-asserted source
Jacob D. Washburn

Funding (2)

Developing a New Paradigm for Quantitative Genetic Modeling: Integrating Molecular, Physiological, and Environmental Variation

2017-08 to 2020-07 | Award
National Science Foundation (VA, VA, US)
GRANT_NUMBER:

1710618

Source: Self-asserted source
Jacob D. Washburn

DISSERTATION RESEARCH: C4 Photosynthetic Evolution; Sub-types, Diversity, and Function within the Grass Tribe Paniceae

2015-07-01 to 2016-06-30 | Grant
National Science Foundation - Directorate for Biological Sciences (Arlington, US)
GRANT_NUMBER: 1501406
Source: Self-asserted source
Jacob D. Washburn via DimensionsWizard

Works (37)

Global genotype by environment prediction competition reveals that diverse modeling strategies can deliver satisfactory maize yield estimates

GENETICS
2025-02-05 | Journal article
Contributors: Jacob D Washburn; José Ignacio Varela; Alencar Xavier; Qiuyue Chen; David Ertl; Joseph L Gage; James B Holland; Dayane Cristina Lima; Maria Cinta Romay; Marco Lopez-Cruz et al.
Source: check_circle
Crossref

High temporal resolution unoccupied aerial systems phenotyping provides unique information between flight dates

The Plant Phenome Journal
2024-12 | Journal article
Contributors: Jacob D. Washburn; Alper Adak; Aaron J. DeSalvio; Mustafa A. Arik; Seth C. Murray
Source: check_circle
Crossref

Drone-Based Identification of Flood-Tolerant Maize via Multispectral Imaging: A Real-World Case Study

2024-11-28 | Preprint
Contributors: Madison Mitchell; Grace Sidberry; Morgan Mathison; Aaron J. DeSalvio; Daniel Kick; Jacob D. Washburn
Source: check_circle
Crossref

Global Genotype by Environment Prediction Competition Reveals That Diverse Modeling Strategies Can Deliver Satisfactory Maize Yield Estimates

2024-09-20 | Preprint
Contributors: Jacob D. Washburn; José Ignacio Varela; Alencar Xavier; Qiuyue Chen; David Ertl; Joseph L. Gage; James B. Holland; Dayane Cristina Lima; Maria Cinta Romay; Marco Lopez-Cruz et al.
Source: check_circle
Crossref

Halophytes and heavy metals: A multi‐omics approach to understand the role of gene and genome duplication in the abiotic stress tolerance of Cakile maritima

American Journal of Botany
2024-08 | Journal article
Contributors: Shawn K. Thomas; Kathryn Vanden Hoek; Tasha Ogoti; Ha Duong; Ruthie Angelovici; J. Chris Pires; David Mendoza‐Cozatl; Jacob Washburn; Craig A. Schenck
Source: check_circle
Crossref

Deciphering temporal growth patterns in maize: integrative modeling of phenotype dynamics and underlying genomic variations

New Phytologist
2024-04 | Journal article
Contributors: Alper Adak; Seth C. Murray; Jacob D. Washburn
Source: check_circle
Crossref

Synthetically Labeled Images for Maize Plant Detection in UAS Images

2023 | Book chapter
Contributors: Piyush Pandey; Norman B. Best; Jacob D. Washburn
Source: check_circle
Crossref

GWAS analysis of maize host plant resistance to western corn rootworm (Coleoptera: Chrysomelidae) reveals candidate small effect loci for resistance breeding

Journal of Economic Entomology
2023-12-11 | Journal article
Contributors: Jacob D Washburn; Harper F LaFond; Martian C Lapadatescu; Adriano E Pereira; Matthias Erb; Bruce E Hibbard; Brian Rector
Source: check_circle
Crossref

RootBot: High‐throughput root stress phenotyping robot

Applications in Plant Sciences
2023-11 | Journal article
Contributors: Mia Ruppel; Sven K. Nelson; Grace Sidberry; Madison Mitchell; Daniel Kick; Shawn K. Thomas; Katherine E. Guill; Melvin J. Oliver; Jacob D. Washburn
Source: check_circle
Crossref

Genomes to Fields 2022 Maize genotype by Environment Prediction Competition

BMC Research Notes
2023-07-17 | Journal article
Contributors: Dayane Cristina Lima; Jacob D. Washburn; José Ignacio Varela; Qiuyue Chen; Joseph L. Gage; Maria Cinta Romay; James Holland; David Ertl; Marco Lopez-Cruz; Fernando M. Aguate et al.
Source: check_circle
Crossref

Ensemble of best linear unbiased predictor, machine learning and deep learning models predict maize yield better than each model alone

in silico Plants
2023-07-01 | Journal article
Contributors: Daniel R Kick; Jacob D Washburn; Graeme Hammer
Source: check_circle
Crossref

Ensemble of BLUP, Machine Learning, and Deep Learning Models Predict Maize Yield Better Than Each Model Alone

2023-04-02 | Preprint
Contributors: Daniel R. Kick; Jacob D. Washburn
Source: check_circle
Crossref

RootBot Image Scoring Instructions

protocols.io
2023-01-24 | Journal article | Author
Contributors: Jacob D. Washburn
Source: check_circle
protocols.io

Distinct C4 sub‐types and C3 bundle sheath isolation in the Paniceae grasses

Plant Direct
2021-12 | Journal article
Contributors: Jacob D. Washburn; Josh Strable; Patrick Dickinson; Satya S. Kothapalli; Julia M. Brose; Sarah Covshoff; Gavin C. Conant; Julian M. Hibberd; Joseph Chris Pires
Source: check_circle
Crossref

Predicting phenotypes from genetic, environment, management, and historical data using CNNs

Theoretical and Applied Genetics
2021-12-27 | Journal article
Contributors: Jacob D. Washburn; Emre Cimen; Guillaume Ramstein; Timothy Reeves; Patrick O’Briant; Greg McLean; Mark Cooper; Graeme Hammer; Edward S. Buckler
Source: check_circle
Crossref

Trait Association and Prediction Through Integrative K-mer Analysis

2021-11-19 | Other
Contributors: Cheng He; Jacob D. Washburn; Yangfan Hao; Zhiwu Zhang; Jinliang Yang; Sanzhen Liu
Source: check_circle
Crossref

Predicting phenotypes from genetic, environment, management, and historical data using CNNs

2021-05-27 | Other
Contributors: Jacob D. Washburn; Emre Cimen; Guillaume Ramstein; Timothy Reeves; Patrick O’Briant; Greg McLean; Mark Cooper; Graeme Hammer; Edward S. Buckler
Source: check_circle
Crossref

Predictive breeding for maize: Making use of molecular phenotypes, machine learning, and physiological crop models

Crop Science
2020-03 | Journal article
Part of ISSN: 0011-183X
Part of ISSN: 1435-0653
Source: Self-asserted source
Jacob D. Washburn

James A. Birchler

The Plant Cell
2019-10 | Journal article
Part of ISSN: 1040-4651
Part of ISSN: 1532-298X
Source: Self-asserted source
Jacob D. Washburn
grade
Preferred source (of 2)‎

Phylogeny and Multiple Independent Whole-Genome Duplication Events in the Brassicales

2019-10-01 | Other
Contributors: Makenzie E. Mabry; Julia M. Brose; Paul D. Blischak; Brittany Sutherland; Wade T. Dismukes; Christopher A. Bottoms; Patrick P. Edger; Jacob D. Washburn; Hong An; Jocelyn C. Hall et al.
Source: check_circle
Crossref

Progressive heterosis in genetically defined tetraploid maize

Journal of Genetics and Genomics
2019-08 | Journal article
Part of ISSN: 1673-8527
Source: Self-asserted source
Jacob D. Washburn

Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence

Proceedings of the National Academy of Sciences
2019-03-19 | Journal article
Part of ISSN: 0027-8424
Part of ISSN: 1091-6490
Source: Self-asserted source
Jacob D. Washburn

Evolutionarily informed deep learning methods: Predicting transcript abundance from DNA sequence

2018-07-19 | Other
Contributors: Jacob D. Washburn; Maria Katherine Mejia-Guerra; Guillaume Ramstein; Karl A. Kremling; Ravi Valluru; Edward S. Buckler; Hai Wang
Source: check_circle
Crossref

Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses

Scientific Reports
2018-05-02 | Journal article
Contributors: Jacob D. Washburn; James C. Schnable; Gavin C. Conant; Thomas P. Brutnell; Ying Shao; Yang Zhang; Martha Ludwig; Gerrit Davidse; J. Chris Pires
Source: check_circle
Crossref

Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived

Genome Biology and Evolution
2018-03-01 | Journal article
Part of ISSN: 1759-6653
Source: Self-asserted source
Jacob D. Washburn

Location of low copy genes in chromosomes of Brachiaria spp.

Molecular Biology Reports
2018-01 | Journal article
Part of ISSN: 0301-4851
Part of ISSN: 1573-4978
Source: Self-asserted source
Jacob D. Washburn

Registration of perennial Sorghum bicolor × S. propinquum line PSH12TX09

Journal of Plant Registrations
2017 | Journal article
EID:

2-s2.0-85009064386

Contributors: Jessup, R.W.; Klein, R.R.; Burson, B.L.; Murray, S.C.; Washburn, J.D.; Heitholt, J.J.; Foster, J.L.
Source: Self-asserted source
Jacob D. Washburn via Scopus - Elsevier

Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses

Scientific Reports
2017-10 | Journal article
Part of ISSN: 2045-2322
Source: Self-asserted source
Jacob D. Washburn
grade
Preferred source (of 2)‎

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower

The Plant Cell
2017-09 | Journal article
Part of ISSN: 1040-4651
Part of ISSN: 1532-298X
Source: Self-asserted source
Jacob D. Washburn

Distinct C4Sub-Types and C3Bundle Sheath Isolation In The Paniceae Grasses

2017-07-13 | Preprint
Contributors: Jacob D. Washburn; Josh Strable; Patrick Dickinson; Satya S. Kothapalli; Julia M. Brose; Sarah Covshoff; Gavin C. Conant; Julian M. Hibberd; J. Chris Pires
Source: check_circle
Crossref

Convergent evolution and the origin of complex phenotypes in the age of systems biology

International Journal of Plant Sciences
2016 | Journal article
EID:

2-s2.0-84964883071

Contributors: Washburn, J.D.; Bird, K.A.; Conant, G.C.; Pires, J.C.
Source: Self-asserted source
Jacob D. Washburn via Scopus - Elsevier

Polyploidy in maize: The impact of homozygosity and hybridity on phenotype.

Polyploidy and Hybridization for Crop Improvement
2016 | Book chapter
Part of ISBN: 9781498740661
Source: Self-asserted source
Jacob D. Washburn

Phylogeny and photosynthesis of the grass tribe Paniceae

American Journal of Botany
2015 | Journal article
EID:

2-s2.0-84942236033

Contributors: Washburn, J.D.; Schnable, J.C.; Davidse, G.; Pires, J.C.
Source: Self-asserted source
Jacob D. Washburn via Scopus - Elsevier

Polyploids as a "model system" for the study of heterosis

Plant Reproduction
2014 | Journal article
EID:

2-s2.0-84896704687

Contributors: Washburn, J.D.; Birchler, J.A.
Source: Self-asserted source
Jacob D. Washburn via Scopus - Elsevier

Estimation of Rhizome Composition and Overwintering Ability in Perennial Sorghum spp. Using Near-Infrared Spectroscopy (NIRS)

Bioenergy Research
2013 | Journal article
EID:

2-s2.0-84876968164

Contributors: Washburn, J.D.; Whitmire, D.K.; Murray, S.C.; Burson, B.L.; Wickersham, T.A.; Heitholt, J.J.; Jessup, R.W.
Source: Self-asserted source
Jacob D. Washburn via Scopus - Elsevier

Targeted mapping of quantitative trait locus regions for rhizomatousness in chromosome SBI-01 and analysis of overwintering in a Sorghum bicolor × S. propinquum population

Molecular Breeding
2013 | Journal article
EID:

2-s2.0-84871933755

Contributors: Washburn, J.D.; Murray, S.C.; Burson, B.L.; Klein, R.R.; Jessup, R.W.
Source: Self-asserted source
Jacob D. Washburn via Scopus - Elsevier

Watching the grin fade: Tracing the effects of polyploidy on different evolutionary time scales

Seminars in Cell and Developmental Biology
2013 | Journal article
EID:

2-s2.0-84876726255

Contributors: Mayfield-Jones, D.; Washburn, J.D.; Arias, T.; Edger, P.P.; Pires, J.C.; Conant, G.C.
Source: Self-asserted source
Jacob D. Washburn via Scopus - Elsevier

Peer review (3 reviews for 3 publications/grants)

Review activity for Heredity (1)
Review activity for Nature plants. (1)
Review activity for Plant physiology. (1)