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Employment (6)

Cornell University: Ithaca, US

2017 to present | Professor (School of Integrative Plant Sciences)
Employment
Source: Self-asserted source
Daniel H Buckley

Cornell University: Ithaca, US

2017 to present | Professor (Department of Microbiology (joint))
Employment
Source: Self-asserted source
Daniel H Buckley

Cornell University: Ithaca, US

2009 to 2017 | Associate Professor (Department of Soil and Crop Sciences)
Employment
Source: Self-asserted source
Daniel H Buckley

Marine Biological Laboratory: Woods Hole, US

2009 to 2013 | Course Director (Microbial Diversity Summer Course)
Employment
Source: Self-asserted source
Daniel H Buckley

Cornell University: Ithaca, NY, US

2003 to 2009 | Assistant Professor (Department of Soil and Crop Sciences)
Employment
Source: Self-asserted source
Daniel H Buckley

University of Connecticut: Storrs, CT, US

2001 to 2003 | Postdoctoral Fellow (Marine Sciences)
Employment
Source: Self-asserted source
Daniel H Buckley

Education and qualifications (2)

Michigan State University: East Lansing, MI, US

1994 to 2000 | PhD/Microbiology (Microbiology)
Education
Source: Self-asserted source
Daniel H Buckley

University of Rochester: Rochester, NY, US

1990 to 1994 | BS/Microbiology (Microbiology)
Education
Source: Self-asserted source
Daniel H Buckley

Works (50 of 110)

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Dynamics of bacterial growth, and life-history tradeoffs, explain differences in soil carbon cycling due to land-use

2025-01-29 | Other
Contributors: Daniel H. Buckley; Cassandra Wattenburger; Evangeline Wang
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Crossref

Long-term tillage regime structures bacterial carbon assimilation

2025-01-08 | Preprint
Contributors: Marie Schaedel; Chantal Koechli; Daniel Buckley
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Crossref

The effects of mixed-species root zones on the resistance of soil bacteria and fungi to long-term experimental and natural reductions in soil moisture

Science of the Total Environment
2023 | Journal article
Contributors: Wilhelm, Roland C.; Munoz-Ucros, Juana; Weikl, Fabian; Pritsch, Karin; Goebel, Marc; Buckley, Daniel H.; Bauerle, Taryn L.
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Land use alters bacterial growth dynamics in soil

Environmental Microbiology
2023-12 | Journal article
Contributors: Cassandra J. Wattenburger; Daniel H. Buckley
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Helping students see bacteria in 3D: cellular models increase student learning about cell size and diffusion

Journal of Microbiology & Biology Education
2023-12-14 | Journal article
Contributors: Emily M. Wollmuth; Alberto Correa, III; Manuela Alvarado Obando; Michelle K. Smith; Daniel H. Buckley; Kathleen L. Hefferon; Esther R. Angert; Nancy Maroushek Boury
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Ecological insights into soil health according to the genomic traits and environment-wide associations of bacteria in agricultural soils

ISME Communications
2023-12-01 | Journal article
Part of ISSN: 2730-6151
Contributors: Roland C. Wilhelm; Joseph P Amsili; Kirsten S M Kurtz; Harold M van Es; Daniel H Buckley
Source: Self-asserted source
Daniel H Buckley

Metagenomic stable isotope probing reveals bacteriophage participation in soil carbon cycling

Environmental Microbiology
2023-10 | Journal article
Contributors: Samuel E. Barnett; Daniel H. Buckley
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Crossref

Calcium promotes persistent soil organic matter by altering microbial transformation of plant litter

Nature Communications
2023-10-19 | Journal article
Contributors: Itamar A. Shabtai; Roland C. Wilhelm; Steffen A. Schweizer; Carmen Höschen; Daniel H. Buckley; Johannes Lehmann
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Crossref

Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing

mBio
2023-04-25 | Journal article
Contributors: Samuel E. Barnett; Rob Egan; Brian Foster; Emiley A. Eloe-Fadrosh; Daniel H. Buckley; Stephen J. Giovannoni
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Elevational Gradients Impose Dispersal Limitation on Streptomyces

Frontiers in Microbiology
2022 | Journal article
Contributors: Hariharan, Janani; Buckley, Daniel H.
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Microbial community shifts correspond with suppression of decomposition 25 years after liming of acidic forest soils

Global Change Biology
2022 | Journal article
Contributors: Sridhar, Bhavya; Wilhelm, Roland C.; Debenport, Spencer J.; Fahey, Timothy J.; Buckley, Daniel H.; Goodale, Christine L.
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Predicting measures of soil health using the microbiome and supervised machine learning

Soil Biology and Biochemistry
2022 | Journal article
Contributors: Wilhelm, Roland C.; van Es, Harold M.; Buckley, Daniel H.
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Substrate Utilization and Competitive Interactions Among Soil Bacteria Vary With Life-History Strategies

Frontiers in Microbiology
2022 | Journal article
Contributors: Wang, Ying; Wilhelm, Roland C.; Swenson, Tami L.; Silver, Anita; Andeer, Peter F.; Golini, Amber; Kosina, Suzanne M.; Bowen, Benjamin P.; Buckley, Daniel H.; Northen, Trent R.
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Susceptibility of new soil organic carbon to mineralization during dry-wet cycling in soils from contrasting ends of a precipitation gradient

Soil Biology and Biochemistry
2022 | Journal article
Contributors: Wilhelm, Roland C.; Lynch, Laurel; Webster, Tara M.; Schweizer, Steffen; Inagaki, Thiago M.; Tfaily, Malak M.; Kukkadapu, Ravi; Hoeschen, Carmen; Buckley, Daniel H.; Lehmann, Johannes
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Watershed‐scale liming reveals the short‐ and long‐term effects ofpHon the forest soil microbiome and carbon cycling

Environmental Microbiology
2022-12 | Journal article
Contributors: Bhavya Sridhar; Gregory B. Lawrence; Spencer J. Debenport; Timothy J. Fahey; Daniel H. Buckley; Roland C. Wilhelm; Christine L. Goodale
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Crossref
grade
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Bacterial community dynamics explain carbon mineralization and assimilation in soils of different land‐use history

Environmental Microbiology
2022-11 | Journal article
Contributors: Samuel E. Barnett; Nicholas D. Youngblut; Daniel H. Buckley
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Crossref
grade
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Tracing Carbon Metabolism with Stable Isotope Metabolomics Reveals the Legacy of Diverse Carbon Sources in Soil

Applied and Environmental Microbiology
2022-11-22 | Journal article
Contributors: Roland C. Wilhelm; Samuel E. Barnett; Tami L. Swenson; Nicholas D. Youngblut; Chantal N. Koechli; Benjamin P. Bowen; Trent R. Northen; Daniel H. Buckley; Jennifer B. Glass
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grade
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Thousands of small, novel genes predicted in global phage genomes

Cell Reports
2022-06 | Journal article
Part of ISSN: 2211-1247
Contributors: Brayon Fremin; Ami S. Bhatt; Nikos Kyrpides; Aditi Sengupta; Alexander Sczyrba; Aline Maria da Silva; Alison Buchan; Amelie Gaudin; Andreas Brune; Ann M. Hirsch et al.
Source: Self-asserted source
Daniel H Buckley

The RNA virome of echinoderms

Journal of General Virology
2022-06-29 | Journal article
Contributors: Elliot W. Jackson; Roland C. Wilhelm; Daniel H. Buckley; Ian Hewson
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grade
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Drought legacy in rhizosphere bacterial communities alters subsequent plant performance

Plant and Soil
2022-02 | Journal article
Contributors: Juana Munoz-Ucros; Roland C. Wilhelm; Daniel H. Buckley; Taryn L. Bauerle
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Conditional filamentation as an adaptive trait of bacteria and its ecological significance in soils

Environmental Microbiology
2022-01 | Journal article
Contributors: David C. Karasz; Anna I. Weaver; Daniel H. Buckley; Roland C. Wilhelm
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grade
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Streptomyces apricus sp. nov., isolated from soil

International Journal of Systematic and Evolutionary Microbiology
2022-01-19 | Journal article
Contributors: Janani Hariharan; Mallory J. Choudoir; Peter Diebold; Kevin Panke-Buisse; Daniel H. Buckley
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grade
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Nationwide genomic atlas of soil-dwelling Listeria reveals effects of selection and population ecology on pangenome evolution

Nature Microbiology
2021 | Journal article
Contributors: Liao, Jingqiu; Guo, Xiaodong; Weller, Daniel L.; Pollak, Shaul; Buckley, Daniel H.; Wiedmann, Martin; Cordero, Otto X.
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The biogeography of Streptomyces in New Zealand enabled by high-throughput sequencing of genus-specific rpoB amplicons

Environmental Microbiology
2021 | Journal article
Contributors: Higgins, S. A.; Panke-Buisse, K.; Buckley, Daniel H.
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Phenolic acid-degrading <i>Paraburkholderia</i> prime decomposition in forest soil

ISME Communications
2021-12-01 | Journal article
Part of ISSN: 2730-6151
Contributors: Roland C. Wilhelm; Christopher M DeRito; James Shapleigh; Eugene L Madsen; Daniel H Buckley
Source: Self-asserted source
Daniel H Buckley

Multisubstrate DNA stable isotope probing reveals guild structure of bacteria that mediate soil carbon cycling

Proceedings of the National Academy of Sciences
2021-11-23 | Journal article
Contributors: Samuel E. Barnett; Nicholas D. Youngblut; Chantal N. Koechli; Daniel H. Buckley
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grade
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A genomic catalog of Earth’s microbiomes

Nature Biotechnology
2021-04 | Journal article
Part of ISSN: 1087-0156
Part of ISSN: 1546-1696
Contributors: Stephen Nayfach; Simon Roux; Rekha Seshadri; Daniel Udwary; Neha Varghese; Frederik Schulz; Dongying Wu; David Paez-Espino; I-Min Chen; Marcel Huntemann et al.
Source: Self-asserted source
Daniel H Buckley

Competitive Exclusion and Metabolic Dependency among Microorganisms Structure the Cellulose Economy of an Agricultural Soil

mBio
2021-02-23 | Journal article
Contributors: Roland C. Wilhelm; Charles Pepe-Ranney; Pamela Weisenhorn; Mary Lipton; Daniel H. Buckley; Jennifer B. H. Martiny
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grade
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Brock Biology of Microorganisms

Pearson
2020 | Book | Writing - original draft, Writing - review & editing
Contributors: Daniel H Buckley
Source: Self-asserted source
Daniel H Buckley

Evaluating the Microbiome of Hemp

Phytobiomes Journal
2020 | Journal article
Contributors: Barnett, Samuel E.; Cala, Ali R.; Hansen, Julie L.; Crawford, Jamie; Viands, Donald R.; Smart, Lawrence B.; Smart, Christine D.; Buckley, Daniel H.
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Evidence for phylogenetically and catabolically diverse active diazotrophs in deep-sea sediment

The ISME Journal
2020 | Journal article
Contributors: Kapili, Bennett J.; Barnett, Samuel E.; Buckley, Daniel H.; Dekas, Anne E.
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Paraburkholderia madseniana sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil

International Journal of Systematic and Evolutionary Microbiology
2020 | Journal article
Contributors: Wilhelm, Roland C.; Murphy, Sean J. L.; Feriancek, Nicole M.; Karasz, David C.; DeRito, Christopher M.; Newman, Jeffrey D.; Buckley, Daniel H.
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Prevalent root-derived phenolics drive shifts in microbial community composition and prime decomposition in forest soil

Soil Biology and Biochemistry
2020 | Journal article
Contributors: Zwetsloot, Marie J.; Ucros, Juana Munoz; Wickings, Kyle; Wilhelm, Roland C.; Sparks, Jed; Buckley, Daniel H.; Bauerle, Taryn L.
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Simulating metagenomic stable isotope probing datasets with MetaSIPSim

BMC Bioinformatics
2020-12 | Journal article
Contributors: Samuel E. Barnett; Daniel H. Buckley
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Paraburkholderia solitsugae sp. nov. and Paraburkholderia elongata sp. nov., phenolic acid-degrading bacteria isolated from forest soil and emended description of Paraburkholderia madseniana

International Journal of Systematic and Evolutionary Microbiology
2020-09-01 | Journal article
Contributors: Roland C. Wilhelm; K. Taylor Cyle; Carmen Enid Martinez; David C. Karasz; Jeffrey D. Newman; Daniel H. Buckley
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grade
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Soil characteristics and land-use drive bacterial community assembly patterns.

FEMS microbiology ecology
2019-12 | Journal article
Contributors: Barnett SE; Youngblut ND; Buckley DH
Source: Self-asserted source
Daniel H Buckley via Europe PubMed Central
grade
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Plant growth rate and nitrogen uptake shape rhizosphere bacterial community composition and activity in an agricultural field

New Phytologist
2019-10-30 | Journal article
Part of ISSN: 0028-646X
Part of ISSN: 1469-8137
Source: Self-asserted source
Daniel H Buckley
grade
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Factors governing extracellular DNA degradation dynamics in soil

Environmental Microbiology Reports
2019-04 | Journal article
Contributors: Sara Hope Sirois; Daniel H. Buckley
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Assessing fungal contributions to cellulose degradation in soil by using high-throughput stable isotope probing

Soil Biology and Biochemistry
2019-03 | Journal article
Part of ISSN: 0038-0717
Source: Self-asserted source
Daniel H Buckley
grade
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Fitness Cost of Aflatoxin Production inAspergillus flavusWhen Competing with Soil Microbes Could Maintain Balancing Selection

mBio
2019-02-19 | Journal article
Part of ISSN: 2150-7511
Source: Self-asserted source
Daniel H Buckley
grade
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Data Analysis for DNA Stable Isotope Probing Experiments Using Multiple Window High-Resolution SIP.

Methods in molecular biology (Clifton, N.J.)
2019-01 | Journal article
Contributors: Barnett SE; Youngblut ND; Buckley DH
Source: Self-asserted source
Daniel H Buckley via Europe PubMed Central
grade
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Evaluating the Microbiome of Industrial Hemp

Phytopathology
2018 | Journal article
Contributors: Cala, A. R.; Barnett, S.; Hansen, J.; Crawford, J.; Viands, D.; Smart, L.; Buckley, D.; Smart, C. D.
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Eighty years of maize breeding alters plant nitrogen acquisition but not rhizosphere bacterial community composition

Plant and Soil
2018-10 | Journal article
Part of ISSN: 0032-079X
Part of ISSN: 1573-5036
Source: Self-asserted source
Daniel H Buckley
grade
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25th Annual ASM Conference for Undergraduate Educators (ASMCUE)

Journal of Microbiology & Biology Education
2018-10-31 | Journal article
Part of ISSN: 1935-7877
Part of ISSN: 1935-7885
Source: Self-asserted source
Daniel H Buckley

The Microbial Landscape of Sea Stars and the Anatomical and Interspecies Variability of Their Microbiome.

Frontiers in microbiology
2018-08 | Journal article
Contributors: Jackson EW; Pepe-Ranney C; Debenport SJ; Buckley DH; Hewson I
Source: Self-asserted source
Daniel H Buckley via Europe PubMed Central
grade
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Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa.

The ISME journal
2018-06 | Journal article
Contributors: Choudoir MJ; Buckley DH
Source: Self-asserted source
Daniel H Buckley via Europe PubMed Central
grade
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SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments.

Frontiers in microbiology
2018-03 | Journal article
Contributors: Youngblut ND; Barnett SE; Buckley DH
Source: Self-asserted source
Daniel H Buckley via Europe PubMed Central
grade
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Diversification of Secondary Metabolite Biosynthetic Gene Clusters Coincides with Lineage Divergence in Streptomyces.

Antibiotics (Basel, Switzerland)
2018-02 | Journal article
Contributors: Choudoir MJ; Pepe-Ranney C; Buckley DH
Source: Self-asserted source
Daniel H Buckley via Europe PubMed Central
grade
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HTSSIP: An R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments.

PloS one
2018-01 | Journal article
Contributors: Youngblut ND; Barnett SE; Buckley DH
Source: Self-asserted source
Daniel H Buckley via Europe PubMed Central
grade
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Genome Surfing As Driver of Microbial Genomic Diversity

Trends in Microbiology
2017 | Journal article
WOSUID:

WOS:000405559700008

Contributors: Choudoir, Mallory J.; Panke-Buisse, Kevin; Andam, Cheryl P.; Buckley, Daniel H.
Source: Self-asserted source
Daniel H Buckley via ResearcherID
grade
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