Personal information

United States

Biography

Aubrey Weigel is currently a Project Scientist of the CellMap Project Team at HHMI – Janelia Research Campus. The team uses advanced imaging technologies to study the ultrastructure and dynamics of subcellular organelles under both healthy and pathological conditions. Aubrey’s previous research background is in biophysics, with an emphasis in microscopy. Her formal training is in physics and engineering. During her graduate work Aubrey was the co-discoverer of ergodicity breaking in cells along with Diego Krapf, driving a pivotal shift in the field of diffusion analysis in living systems. Throughout her postdoctoral career under the guidance of Jennifer Lippincott-Schwartz, she applied her training in physics and microscopy directly to answer biological questions. Here, Aubrey unraveled the underlying structure of the endoplasmic reticulum and revealed its complex dynamics. She also uncovered the nano-anatomy of early secretory compartments and discovered a new, dynamic organelle, responsible for delivering newly synthesized cargo from the endoplasmic reticulum to the Golgi. Aubrey’s recent work as the leader of the CellMap Project Team includes developing an invaluable tool for cell biology - an analysis pipeline based on deep learning architectures for segmentation - allowing comprehensive reconstruction and analysis of organelles within entire cells imaged by volumetric electron microscopy. Aubrey is committed to integrating her multi-disciplinary training into facilitating large-effort, collaborative, team projects to take on challenging scientific problems and sharing these resources with the broader scientific community.

Activities

Employment (5)

Janelia Research Campus: Ashburn, US

2021-10-01 to present | Project Scientist (CellMap Project Team)
Employment
Source: Self-asserted source
Aubrey Weigel

Janelia Research Campus: Ashburn, US

2019-04-28 to 2021-09-30 | Associate Project Scientist (COSEM Project Team)
Employment
Source: Self-asserted source
Aubrey Weigel

Janelia Research Campus: Ashburn, US

2016-12 to 2019-04-27 | Research Scientist (Jennifer Lippincott-Schwartz Lab)
Employment
Source: Self-asserted source
Aubrey Weigel

Janelia Research Campus: Ashburn, US

2016-02-29 to 2016-12 | Postdoctoral Scientist (Jennifer Lippincott-Schwartz Lab)
Employment
Source: Self-asserted source
Aubrey Weigel

National Institutes of Health: Bethesda, MD, US

2013-10 to 2016-02 | Postdoctoral Scientist (NICHD)
Employment
Source: Self-asserted source
Aubrey Weigel

Education and qualifications (2)

Colorado State University: Fort Collins, CO, US

2008-08 to 2013-05 (Bioengineering)
Education
Source: Self-asserted source
Aubrey Weigel

Fort Hays State University: Hays, KS, US

2004-08 to 2008-05 (Physics)
Education
Source: Self-asserted source
Aubrey Weigel

Professional activities (1)

National Institutes of Health: Bethesda, MD, US

2014-10 | Postdoctoral Research Associate Training (PRAT) (NIGMS)
Distinction
Source: Self-asserted source
Aubrey Weigel

Works (23)

Amira Annotation Protocol

protocols.io
2022-10-05 | Interactive resource
Contributors: Aubrey Weigel
Source: Self-asserted source
Aubrey Weigel

Architecture and dynamics of a novel desmosome-endoplasmic reticulum organelle

BioRxiv
2022-07-08 | Preprint
Contributors: Aubrey Weigel
Source: Self-asserted source
Aubrey Weigel

Super-resolution microscopy reveals actomyosin dynamics in medioapical arrays

Molecular Biology of the Cell
2022-05-11 | Journal article
Part of ISSN: 1059-1524
Part of ISSN: 1939-4586
Source: Self-asserted source
Aubrey Weigel

ESCRT-mediated membrane repair protects tumor-derived cells against T cell attack

Science
2022-04-22 | Journal article
Part of ISSN: 0036-8075
Part of ISSN: 1095-9203
Source: Self-asserted source
Aubrey Weigel

YAP1 nuclear efflux and transcriptional reprograming follow membrane diminution upon VSV-G-induced cell fusion

Nature Communications
2021-12 | Journal article
Part of ISSN: 2041-1723
Source: Self-asserted source
Aubrey Weigel

An open-access volume electron microscopy atlas of whole cells and tissues

Nature
2021-11-04 | Journal article
Part of ISSN: 0028-0836
Part of ISSN: 1476-4687
Source: Self-asserted source
Aubrey Weigel

Whole-cell organelle segmentation in volume electron microscopy

Nature
2021-11-04 | Journal article
Part of ISSN: 0028-0836
Part of ISSN: 1476-4687
Source: Self-asserted source
Aubrey Weigel

Activity-dependent Golgi satellite formation in dendrites reshapes the neuronal surface glycoproteome

eLife
2021-09-21 | Journal article
Part of ISSN: 2050-084X
Source: Self-asserted source
Aubrey Weigel

ER-to-Golgi protein delivery through an interwoven, tubular network extending from ER

Cell
2021-04 | Journal article
Part of ISSN: 0092-8674
Source: Self-asserted source
Aubrey Weigel

Imaging Cellular Proteins and Structures: Smaller, Brighter, and Faster

The Liver: Biology and Pathology
2020-02-12 | Book chapter
Part of ISBN: 9781119436829
Part of ISBN: 9781119436812
Source: Self-asserted source
Aubrey Weigel

Rational Design of Fluorogenic and Spontaneously Blinking Labels for Super-Resolution Imaging

ACS Central Science
2019-09-25 | Journal article
Part of ISSN: 2374-7943
Part of ISSN: 2374-7951
Source: Self-asserted source
Aubrey Weigel

Spastin tethers lipid droplets to peroxisomes and directs fatty acid trafficking through ESCRT-III

The Journal of Cell Biology
2019-08-05 | Journal article
Part of ISSN: 0021-9525
Part of ISSN: 1540-8140
Source: Self-asserted source
Aubrey Weigel

Neuron-Astrocyte Metabolic Coupling Protects against Activity-Induced Fatty Acid Toxicity

Cell
2019-05 | Journal article
Part of ISSN: 0092-8674
Source: Self-asserted source
Aubrey Weigel

Transport and sorting in the Golgi complex: multiple mechanisms sort diverse cargo

Current Opinion in Cell Biology
2018-02 | Journal article
Part of ISSN: 0955-0674
Source: Self-asserted source
Aubrey Weigel

Increased spatiotemporal resolution reveals highly dynamic dense tubular matrices in the peripheral ER

Science
2016-10-28 | Journal article
Part of ISSN: 0036-8075
Part of ISSN: 1095-9203
Source: Self-asserted source
Aubrey Weigel

Quantifying the dynamic interactions between a clathrin-coated pit and cargo molecules

Proceedings of the National Academy of Sciences
2013-11-26 | Journal article
Part of ISSN: 0027-8424
Part of ISSN: 1091-6490
Source: Self-asserted source
Aubrey Weigel

Plasma membrane domains enriched in cortical endoplasmic reticulum function as membrane protein trafficking hubs

Molecular Biology of the Cell
2013-09 | Journal article
Part of ISSN: 1059-1524
Part of ISSN: 1939-4586
Source: Self-asserted source
Aubrey Weigel

Uncertainty Quantification of Discrete Association Problems in Image Sequence-based Tracking

2013-04-21 | Preprint
Source: Self-asserted source
Aubrey Weigel

Size of Cell-Surface Kv2.1 Domains is Governed by Growth Fluctuations

Biophysical Journal
2012-10 | Journal article
Part of ISSN: 0006-3495
Source: Self-asserted source
Aubrey Weigel

Kv2.1 cell surface clusters are insertion platforms for ion channel delivery to the plasma membrane

Molecular Biology of the Cell
2012-08 | Journal article
Part of ISSN: 1059-1524
Part of ISSN: 1939-4586
Source: Self-asserted source
Aubrey Weigel

Obstructed diffusion propagator analysis for single-particle tracking

Physical Review E
2012-04-30 | Journal article
Part of ISSN: 1539-3755
Part of ISSN: 1550-2376
Source: Self-asserted source
Aubrey Weigel

Ergodic and nonergodic processes coexist in the plasma membrane as observed by single-molecule tracking

Proceedings of the National Academy of Sciences
2011-04-19 | Journal article
Part of ISSN: 0027-8424
Part of ISSN: 1091-6490
Source: Self-asserted source
Aubrey Weigel

Anomalous diffusion of kv2.1 channels observed by single molecule tracking in live cells.

Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference
2010-01-01 | Journal article
Source: Self-asserted source
Aubrey Weigel

Peer review (1 review for 1 publication/grant)

Review activity for Nature communications (1)