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Pattern Computer
Wolf-Yadlin Lab

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Scopus Author ID: 8879737300
ResearcherID: E-6574-2011

Keywords

Bioinformatics, Data Science, NGS, Cellular Signaling Networks, Systems Biology

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Works (27)

Machine Learning Prediction of Adenovirus D8 Conjunctivitis Complications from Viral Whole-Genome Sequence

Ophthalmology Science
2022-12 | Journal article
DOI: 10.1016/j.xops.2022.100166
Contributors: Kenji Nakamichi; Lakshmi Akileswaran; Thomas Meirick; Michele D. Lee; James Chodosh; Jaya Rajaiya; David Stroman; Alejandro Wolf-Yadlin; Quinn Jackson; W. Bradley Holtz et al.
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Functional Maturation of Human iPSC-based Cardiac Microphysiological Systems with Tunable Electroconductive Decellularized Extracellular Matrices

2019-09-30 | Other
DOI: 10.1101/786657
Contributors: Jonathan H. Tsui; Andrea Leonard; Nathan D. Camp; Joseph T. Long; Zeid Y. Nawas; Rakchanok Chavanachat; Jong Seob Choi; Alejandro Wolf-Yadlin; Charles E. Murry; Nathan J. Sniadecki et al.
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Crossref

Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data

2017-10-26 | Other
DOI: 10.1101/209676
Contributors: Ali Sinan Köksal; Kirsten Beck; Dylan R. Cronin; Aaron McKenna; Nathan D. Camp; Saurabh Srivastava; Matthew E. MacGilvray; Rastislav Bodík; Alejandro Wolf-Yadlin; Ernest Fraenkel et al.
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Crossref

Integrated systems biology analysis of KSHV latent infection reveals viral induction and reliance on peroxisome mediated lipid metabolism

PLOS Pathogens
2017-03-03 | Journal article
DOI: 10.1371/journal.ppat.1006256
Contributors: Zoi E. Sychev; Dirk P. Dittmer; Alex Hu; Terri A. DiMaio; Anthony Gitter; Nathan D. Camp; William S. Noble; Alejandro Wolf-Yadlin; Michael Lagunoff
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Crossref

Dynamic mass redistribution reveals diverging importance of PDZ-ligands for G protein-coupled receptor pharmacodynamics

Pharmacological Research
2016 | Journal article
DOI: 10.1016/j.phrs.2016.01.003
WOSUID:

WOS:000372379600002
Contributors: Camp, Nathan D.; Lee, Kyung-Soon; Cherry, Allison; Wacker-Mhyre, Jennifer L.; Kountz, Timothy S.; Park, Ji-Min; Harris, Dorathy-Ann; Estrada, Marianne; Stewart, Aaron; Stella, Nephi et al.
Source: Self-asserted source
Alejandro Wolf-Yadlin via ResearcherID

Endogenous N-terminal domain cleavage modulates α1D-adrenergic receptor pharmacodynamics

J Biol Chem
2016 | Journal article
DOI: 10.1074/jbc.M116.729517
Contributors: Kountz, T. S.; Lee, K. S.; Aggarwal-Howarth, S.; Curran, E.; Park, J. M.; Harris, D. A.; Stewart, A.; Hendrickson, J.; Camp, N. D.; Wolf-Yadlin, A. et al.
Source: Self-asserted source
Alejandro Wolf-Yadlin via ResearcherID

Methods for the Analysis of Protein Phosphorylation-Mediated Cellular Signaling Networks

Annu Rev Anal Chem (Palo Alto Calif)
2016 | Journal article
DOI: 10.1146/annurev-anchem-071015-041542
Contributors: White, F. M.; Wolf-Yadlin, A.
Source: Self-asserted source
Alejandro Wolf-Yadlin via ResearcherID

Technical advances in proteomics: new developments in data-independent acquisition

F1000Res
2016 | Journal article
DOI: 10.12688/f1000research.7042.1
Contributors: Hu, A.; Noble, W. S.; Wolf-Yadlin, A.
Source: Self-asserted source
Alejandro Wolf-Yadlin via ResearcherID

Individual protomers of a G protein-coupled receptor dimer integrate distinct functional modules

Cell Discov
2015 | Journal article
DOI: 10.1038/celldisc.2015.11
Contributors: Camp, N. D.; Lee, K. S.; Wacker-Mhyre, J. L.; Kountz, T. S.; Park, J. M.; Harris, D. A.; Estrada, M.; Stewart, A.; Wolf-Yadlin, A.; Hague, C.
Source: Self-asserted source
Alejandro Wolf-Yadlin via ResearcherID

The Tec Kinase-Regulated Phosphoproteome Reveals a Mechanism for the Regulation of Inhibitory Signals in Murine Macrophages

Journal of Immunology
2015 | Journal article
DOI: 10.4049/jimmunol.1403238
WOSUID:

WOS:000358064500032
Contributors: Tampella, Giacomo; Kerns, Hannah M.; Niu, Deqiang; Singh, Swati; Khim, Socheath; Bosch, Katherine A.; Garrett, Meghan E.; Moguche, Albanus; Evans, Erica; Browning, Beth et al.
Source: Self-asserted source
Alejandro Wolf-Yadlin via ResearcherID

A disease-associated PTPN22 variant promotes systemic autoimmunity in murine models

Journal of Clinical Investigation
2013 | Journal article
DOI: 10.1172/JCI66963
WOSUID:

WOS:000319025100025
Contributors: Dai, Xuezhi; James, Richard G.; Habib, Tania; Singh, Swati; Jackson, Shaun; Khim, Socheath; Moon, Randall T.; Liggitt, Denny; Wolf-Yadlin, Alejandro; Buckner, Jane H. et al.
Source: Self-asserted source
Alejandro Wolf-Yadlin via ResearcherID

A General Molecular Affinity Strategy for Global Detection and Proteomic Analysis of Lysine Methylation

Molecular Cell
2013 | Journal article
DOI:

10.1016/j.molcel.2013.03.005
Contributors: Moore, KaitlynE.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier
grade
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Protein Kinase PKN1 Represses Wnt/beta-Catenin Signaling in Human Melanoma Cells

Journal of Biological Chemistry
2013 | Journal article
DOI: 10.1074/jbc.M113.500314
WOSUID:

WOS:000329812800033
Contributors: James, Richard G.; Bosch, Katherine A.; Kulikauskas, Rima M.; Yang, Peitzu T.; Robin, Nick C.; Toroni, Rachel A.; Biechele, Travis L.; Berndt, Jason D.; von Haller, Priska D.; Eng, Jimmy K. et al.
Source: Self-asserted source
Alejandro Wolf-Yadlin via ResearcherID

Receptor Tyrosine Kinases Fall into Distinct Classes Based on Their Inferred Signaling Networks

Science Signaling
2013 | Journal article
DOI: 10.1126/scisignal.2003994
WOSUID:

WOS:000321829600001
Contributors: Wagner, Joel P.; Wolf-Yadlin, Alejandro; Sevecka, Mark; Grenier, Jennifer K.; Root, David E.; Lauffenburger, Douglas A.; MacBeath, Gavin
Source: Self-asserted source
Alejandro Wolf-Yadlin via ResearcherID

Quantitative proteomic analysis of HIV-1 infected CD4+ T cells reveals an early host response in important biological pathways: Protein synthesis, cell proliferation, and T-cell activation

Virology
2012 | Journal article
DOI:

10.1016/j.virol.2012.03.026
Contributors: Navare, A.T.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier
grade
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Lysate microarrays enable high-throughput, quantitative investigations of cellular signaling

Molecular and Cellular Proteomics
2011 | Journal article
DOI:

10.1074/mcp.M110.005363
Contributors: Sevecka, M.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier
grade
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Dissecting protein function and signaling using protein microarrays

Current Opinion in Chemical Biology
2009 | Journal article
DOI:

10.1016/j.cbpa.2009.06.027
Contributors: Wolf-Yadlin, A.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier
grade
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Linear combinations of docking affinities explain quantitative differences in RTK signaling

Molecular Systems Biology
2009 | Journal article
DOI:

10.1038/msb.2008.72
Contributors: Gordus, A.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier
grade
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Maximum entropy reconstructions of dynamic signaling networks from quantitative proteomics data

PLoS ONE
2009 | Journal article
DOI:

10.1371/journal.pone.0006522
Contributors: Locasale, J.W.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier
grade
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Modeling HER2 effects on cell behavior from mass spectrometry phosphotyrosine data

PLoS Computational Biology
2007 | Journal article
DOI:

10.1371/journal.pcbi.0030004
Contributors: Kumar, N.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier
grade
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Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

Proceedings of the National Academy of Sciences of the United States of America
2007 | Journal article
DOI:

10.1073/pnas.0608638104
Contributors: Wolf-Yadlin, A.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier
grade
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Quantitative proteomic analysis of phosphotyrosine-mediated cellular signaling networks

Methods Mol Biol
2007 | Journal article
DOI: 10.1007/978-1-59745-255-7_14
Contributors: Zhang, Y.; Wolf-Yadlin, A.; White, F. M.
Source: Self-asserted source
Alejandro Wolf-Yadlin via ResearcherID

Effects of HER2 overexpression on cell signaling networks governing proliferation and migration

Molecular Systems Biology
2006 | Journal article
DOI:

10.1038/msb4100094
Contributors: Wolf-Yadlin, A.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier
grade
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Engineering antibodies against the epidermal growth factor receptor to block dimerization

AIChE Annual Meeting, Conference Proceedings
2005 | Journal article
EID: 2-s2.0-33645650014
Contributors: Chao, G.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier

Systematic analysis of erbb induced signaling, proliferation, and migration

AIChE Annual Meeting, Conference Proceedings
2005 | Journal article
EID: 2-s2.0-33645635592
Contributors: Kumar, N.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier

Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules

Molecular and Cellular Proteomics
2005 | Journal article
DOI:

10.1074/mcp.M500089-MCP200
Contributors: Zhang, Y.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier
grade
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The surface exposed amino acid residues of monomeric proteins determine the partitioning in aqueous two-phase systems

Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology
2002 | Journal article
DOI:

10.1016/S0167-4838(02)00222-4
Contributors: Berggren, K.
Source: Self-asserted source
Alejandro Wolf-Yadlin via Scopus - Elsevier
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