Personal information

Verified email addresses

Verified email domains

Genomics, Microbiology, Computational Biology

Activities

Education and qualifications (1)

DOE Joint Genome Institute: Walnut Creek, CA, US

2014 to present | PhD
Education
Source: Self-asserted source
Rekha Seshadri

Works (50 of 74)

Items per page:
Page 1 of 2

A metagenomic perspective on the microbial prokaryotic genome census

Science Advances
2025-01-17 | Journal article
Contributors: Dongying Wu; Rekha Seshadri; Nikos C. Kyrpides; Natalia N. Ivanova
Source: check_circle
Crossref

Whole genome sequence of the denitrifying thermophile Geobacillus thermodenitrificans subsp. calidus DSM 22629 T

Microbiology Resource Announcements
2024-12-12 | Journal article
Contributors: Mary Snook; Stephan Ritter; Rüdiger Pukall; Markus Göker; Rekha Seshadri; Nathaniel K. Jue; Frank J. Stewart
Source: check_circle
Crossref

Draft genome sequences of Butyrivibrio hungatei DSM 14810 (JK 615 T ) and Butyrivibrio fibrisolvens DSM 3071 (D1 T )

Microbiology Resource Announcements
2024-10-10 | Journal article
Contributors: Keely Berner; Michelle Zoza-Veloz; Matt Nolan; Danielle Graham; Natalia Ivanova; Rekha Seshadri; Stefan Spring; Matthew Escobar; Julie C. Dunning Hotopp
Source: check_circle
Crossref

Draft genome sequence of Nitrobacter vulgaris DSM 10236 T

Microbiology Resource Announcements
2024-08-13 | Journal article
Contributors: Mark Soghomonian; Angela Soghomonian; Matthew Escobar; Vera Thiel; Markus Göker; Natalia Ivanova; Rekha Seshadri; Kalyani Maitra; Irene L. G. Newton
Source: check_circle
Crossref

Discovery of a novel filamentous prophage in the genome of the <i>Mimosa pudica</i> microsymbiont <i>Cupriavidus taiwanensis</i> STM 6018

Frontiers in Microbiology
2023 | Journal article
Contributors: Klonowska, Agnieszka; Ardley, Julie; Moulin, Lionel; Zandberg, Jaco; Patrel, Delphine; Gollagher, Margaret; Marinova, Dora; Reddy, T. B. K.; Varghese, Neha; Huntemann, Marcel et al.
Source: check_circle
Web of Science Researcher Profile Sync

The IMG/M data management and analysis system v.7: content updates and new features

Nucleic Acids Research
2023 | Journal article
Contributors: Chen, I-Min A.; Chu, Ken; Palaniappan, Krishnaveni; Ratner, Anna; Huang, Jinghua; Huntemann, Marcel; Hajek, Patrick; Ritter, Stephan J.; Webb, Cody; Wu, Dongying et al.
Source: check_circle
Web of Science Researcher Profile Sync

Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case

Journal of the Indian Institute of Science
2023-07 | Journal article
Contributors: Rekha Seshadri; Nikos C. Kyrpides; Natalia N. Ivanova
Source: check_circle
Crossref

The Genome of the Acid Soil-Adapted Strain <i>Rhizobium favelukesii</i> OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host

Frontiers in Microbiology
2022 | Journal article
Contributors: Eardly, Bertrand; Osman, Wan Adnawani Meor; Ardley, Julie; Zandberg, Jaco; Gollagher, Margaret; van Berkum, Peter; Elia, Patrick; Marinova, Dora; Seshadri, Rekha; Reddy, T. B. K. et al.
Source: check_circle
Web of Science Researcher Profile Sync

Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes

Cell Genomics
2022-12 | Journal article
Contributors: Rekha Seshadri; Simon Roux; Katharina J. Huber; Dongying Wu; Sora Yu; Dan Udwary; Lee Call; Stephen Nayfach; Richard L. Hahnke; Rüdiger Pukall et al.
Source: check_circle
Crossref

A genomic catalog of Earth's microbiomes

Nature Biotechnology
2021 | Journal article
Contributors: Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I-Min; Huntemann, Marcel et al.
Source: check_circle
Web of Science Researcher Profile Sync

A genomic catalog of Earth's microbiomes (Nov, 10.1038/s41587-020-0718-6, 2020)

Nature Biotechnology
2021 | Journal article
Contributors: Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I- Min; Huntemann, Marcel et al.
Source: check_circle
Web of Science Researcher Profile Sync

A genomic catalog of Earth's microbiomes (November, 10.1038/s41587-020-0718-6, 2020)

Nature Biotechnology
2021 | Journal article
Contributors: Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I-Min; Huntemann, Marcel et al.
Source: check_circle
Web of Science Researcher Profile Sync

DOE JGI Metagenome Workflow

mSystems
2021 | Journal article
Contributors: Clum, Alicia; Huntemann, Marcel; Bushnell, Brian; Foster, Brian; Foster, Bryce; Roux, Simon; Hajek, Patrick P.; Varghese, Neha; Mukherjee, Supratim; Reddy, T. B. K. et al.
Source: check_circle
Web of Science Researcher Profile Sync

The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities

Nucleic Acids Research
2021 | Journal article
Contributors: Chen, I-Min A.; Chu, Ken; Palaniappan, Krishnaveni; Ratner, Anna; Huang, Jinghua; Huntemann, Marcel; Hajek, Patrick; Ritter, Stephan; Varghese, Neha; Seshadri, Rekha et al.
Source: check_circle
Web of Science Researcher Profile Sync

A bacterial toolkit for plants

Nature Reviews Microbiology
2020 | Journal article
Contributors: Seshadri, Rekha
Source: check_circle
Web of Science Researcher Profile Sync

Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil

mSystems
2020 | Journal article
Contributors: Alteio, L., V; Schulz, F.; Seshadri, R.; Varghese, N.; Rodriguez-Reillo, W.; Ryan, E.; Goudeau, D.; Eichorst, S. A.; Malmstrom, R. R.; Bowers, R. M. et al.
Source: check_circle
Web of Science Researcher Profile Sync

IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase

Nucleic Acids Research
2020 | Journal article
Contributors: Palaniappan, Krishnaveni; Chen, I-Min A.; Chu, Ken; Ratner, Anna; Seshadri, Rekha; Kyrpides, Nikos C.; Ivanova, Natalia N.; Mouncey, Nigel J.
Source: check_circle
Web of Science Researcher Profile Sync

Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

Microbiome
2020 | Journal article
Contributors: Zhu, Xinyu; Campanaro, Stefano; Treu, Laura; Seshadri, Rekha; Ivanova, Natalia; Kougias, Panagiotis G.; Kyrpides, Nikos; Angelidaki, Irini
Source: check_circle
Web of Science Researcher Profile Sync

Novel heavy metal resistance gene clusters are present in the genome of <i>Cupriavidus neocaledonicus</i> STM 6070, a new species of <i>Mimosa pudica</i> microsymbiont isolated from heavy-metal-rich mining site soil

BMC Genomics
2020 | Journal article
Contributors: Klonowska, Agnieszka; Moulin, Lionel; Ardley, Julie Kaye; Braun, Florence; Gollagher, Margaret Mary; Zandberg, Jaco Daniel; Marinova, Dora Vasileva; Huntemann, Marcel; Reddy, T. B. K.; Varghese, Neha Jacob et al.
Source: check_circle
Web of Science Researcher Profile Sync

Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades

Environmental Microbiome
2020 | Journal article
Contributors: Abraham, Briana S.; Caglayan, Deniz; Carrillo, Natalie V.; Chapman, Matthew C.; Hagan, Claire T.; Hansen, Skye T.; Jeanty, Ralph O.; Klimczak, Alexander A.; Klingler, Marcos J.; Kutcher, Thomas P. et al.
Source: check_circle
Web of Science Researcher Profile Sync

Occurrence and expression of genes encoding methyl-compound production in rumen bacteria

Animal Microbiome
2019 | Journal article
Contributors: Kelly, William J.; Leahy, Sinead C.; Kamke, Janine; Soni, Priya; Koike, Satoshi; Mackie, Roderick; Seshadri, Rekha; Cook, Gregory M.; Morales, Sergio E.; Greening, Chris et al.
Source: check_circle
Web of Science Researcher Profile Sync

New insights from uncultivated genomes of the global human gut microbiome.

Nature
2019-03-13 | Journal article
Source: Self-asserted source
Rekha Seshadri
grade
Preferred source (of 2)‎

A Comparison of Microbial Genome Web Portals.

Frontiers in microbiology
2019-02-22 | Journal article
Source: Self-asserted source
Rekha Seshadri

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.

Nucleic acids research
2019-01-01 | Journal article
Source: Self-asserted source
Rekha Seshadri
grade
Preferred source (of 2)‎

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life (vol 35, pg 676, 2017)

Nature Biotechnology
2018 | Journal article
Contributors: Mukherjee, Supratim; Seshadri, Rekha; Varghese, Neha J.; Eloe-Fadrosh, Emiley A.; Meier-Kolthoff, Jan P.; Goeker, Markus; Coates, R. Cameron; Hadjithomas, Michalis; Pavlopoulos, Georgios A.; Paez-Espino, David et al.
Source: check_circle
Web of Science Researcher Profile Sync

A Comparison of Microbial Genome Web Portals

ArXiv
2018 | Journal article
Contributors: D. Karp, Peter; Ivanova, Natalia; Krummenacker, Markus; Kyrpides, Nikos; Latendresse, Mario; Midford, Peter; Kit Ong, Wai; Paley, Suzanne; Seshadri, Rekha
Source: check_circle
Web of Science Researcher Profile Sync

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

Nature Biotechnology
2018-04-19 | Journal article
Contributors: Rekha Seshadri; Sinead C Leahy; Graeme T Attwood; Koon Hoong Teh; Suzanne C Lambie; Adrian L Cookson; Emiley A Eloe-Fadrosh; Georgios A Pavlopoulos; Michalis Hadjithomas; Neha J Varghese et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Evolution of a multi-step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer-binding protein triggers acid-activated gene expression

Molecular Microbiology
2017 | Journal article
Contributors: Tian, Rui; Heiden, Stephan; Osman, Wan A. M.; Ardley, Julie K.; James, Euan K.; Gollagher, Margaret M.; Tiwari, Ravi; Seshadri, Rekha; Kyrpides, Nikos C.; Reeve, Wayne G.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality draft genome sequence of <i>Ensifer meliloti</i> Mlalz-1, a microsymbiont of <i>Medicago laciniata</i> (L.) miller collected in Lanzarote, Canary Islands, Spain

Standards in Genomic Sciences
2017 | Journal article
Contributors: Osman, Wan Adnawani Meor; van Berkum, Peter; Leon-Barrios, Milagros; Velazquez, Encarna; Elia, Patrick; Tian, Rui; Ardley, Julie; Gollagher, Margaret; Seshadri, Rekha; Reddy, T. B. K. et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality draft genome sequence of <i>Rhizobium mesoamericanum</i> strain STM6155, a <i>Mimosa pudica</i> microsymbiont from New Caledonia

Standards in Genomic Sciences
2017 | Journal article
Contributors: Klonowska, Agnieszka; Lopez-Lopez, Aline; Moulin, Lionel; Ardley, Julie; Gollagher, Margaret; Marinova, Dora; Tian, Rui; Huntemann, Marcel; Reddy, T. B. K.; Varghese, Neha et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality permanent draft genome sequence of the <i>Bradyrhizobium</i> <i>elkanii</i> type strain USDA 76<SUP>T</SUP>, isolated from <i>Glycine max</i> (L.) Merr

Standards in Genomic Sciences
2017 | Journal article
Contributors: Reeve, Wayne; van Berkum, Peter; Ardley, Julie; Tian, Rui; Gollagher, Margaret; Marinova, Dora; Elia, Patrick; Reddy, T. B. K.; Pillay, Manoj; Varghese, Neha et al.
Source: check_circle
Web of Science Researcher Profile Sync

Simulation of TE6,2-to-Gaussian mode launcher for a millimeter-wave gyrotron

Journal of Electromagnetic Waves and Applications
2017 | Journal article
Contributors: Shahana, K.; Kesari, Vishal; Karmakar, S.; Seshadri, R.
Source: check_circle
Web of Science Researcher Profile Sync

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Nature biotechnology
2017-06-12 | Journal article
Source: Self-asserted source
Rekha Seshadri
grade
Preferred source (of 2)‎

Boron Nitride and Sapphire Windows for 95-GHz Gaussian RF Beam

IEEE Transactions on Electron Devices
2016 | Journal article
Contributors: Kesari, Vishal; Singh, Arun Kumar; Seshadri, Ramaswamy; Kamath, Sudhir
Source: check_circle
Web of Science Researcher Profile Sync

High-quality permanent draft genome sequence of <i>Ensifer</i> sp PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India

Standards in Genomic Sciences
2016 | Journal article
Contributors: Gehlot, Hukam Singh; Ardley, Julie; Tak, Nisha; Tian, Rui; Poonar, Neetu; Meghwal, Raju R.; Rathi, Sonam; Tiwari, Ravi; Adnawani, Wan; Seshadri, Rekha et al.
Source: check_circle
Web of Science Researcher Profile Sync

Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology

Environmental Microbiology
2016 | Journal article
Contributors: Oulas, Anastasis; Polymenakou, Paraskevi N.; Seshadri, Rekha; Tripp, H. James; Mandalakis, Manolis; Paez-Espino, A. David; Pati, Amrita; Chain, Patrick; Nomikou, Paraskevi; Carey, Steven et al.
Source: check_circle
Web of Science Researcher Profile Sync

Symbiotic Burkholderia Species Show Diverse Arrangements of nif/fix and nod Genes and Lack Typical High-Affinity Cytochrome cbb3 Oxidase Genes

Molecular Plant-Microbe Interactions
2016 | Journal article
Contributors: De Meyer, Sofie E.; Briscoe, Leah; Martinez-Hidalgo, Pilar; Agapakis, Christina M.; Estrada de-los Santos, Paulina; Seshadri, Rekha; Reeve, Wayne; Weinstock, George; O'Hara, Graham; Howieson, John G. et al.
Source: check_circle
Web of Science Researcher Profile Sync

A <i>Genomic Encyclopedia of the Root Nodule Bacteria</i>: assessing genetic diversity through a systematic biogeographic survey

Standards in Genomic Sciences
2015 | Journal article
Contributors: Reeve, Wayne; Ardley, Julie; Tian, Rui; Eshragi, Leila; Yoon, Je Won; Ngamwisetkun, Pinyaruk; Seshadri, Rekha; Ivanova, Natalia N.; Kyrpides, Nikos C.
Source: check_circle
Web of Science Researcher Profile Sync

Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria

Scientific Reports
2015 | Journal article
Contributors: Seshadri, Rekha; Reeve, Wayne G.; Ardley, Julie K.; Tennessen, Kristin; Woyke, Tanja; Kyrpides, Nikos C.; Ivanova, Natalia N.
Source: check_circle
Web of Science Researcher Profile Sync

Genome sequence of <i>Bradyrhizobium</i> sp WSM1253; a microsymbiont of <i>Ornithopus</i> <i>compressus</i> from the Greek Island of Sifnos

Standards in Genomic Sciences
2015 | Journal article
Contributors: Tiwari, Ravi; Howieson, John; Yates, Ron; Tian, Rui; Held, Britanny; Tapia, Roxanne; Han, Cliff; Seshadri, Rekha; Reddy, T. B. K.; Huntemann, Marcel et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-Quality draft genome sequence of the Lotus spp. microsymbiont <i>Mesorhizobium loti</i> strain CJ3Sym

Standards in Genomic Sciences
2015 | Journal article
Contributors: Reeve, Wayne; Sullivan, John; Ronson, Clive; Tian, Rui; Munk, Christine; Han, Cliff; Reddy, T. B. K.; Seshadri, Rekha; Woyke, Tanja; Pati, Amrita et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality permanent draft genome sequence of <i>Bradyrhizobium</i> sp Ai1a-2; a microsymbiont of <i>Andira inermis</i> discovered in Costa Rica

Standards in Genomic Sciences
2015 | Journal article
Contributors: Tian, Rui; Parker, Matthew; Seshadri, Rekha; Reddy, T. B. K.; Markowitz, Victor; Ivanova, Natalia; Pati, Amrita; Woyke, Tanja; Baeshen, Mohammed; Baeshen, Nabih et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality permanent draft genome sequence of <i>Bradyrhizobium</i> sp strain WSM1743-an effective microsymbiont of an <i>Indigofera</i> sp growing in Australia

Standards in Genomic Sciences
2015 | Journal article
Contributors: Eshraghi, Leila; De Meyer, Sofie E.; Tian, Rui; Seshadri, Rekha; Ivanova, Natalia; Pati, Amrita; Markowitz, Victor; Woyke, Tanja; Kyrpides, Nikos C.; Tiwari, Ravi et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality permanent draft genome sequence of <i>Bradyrhizobium</i> sp Th.b2, a microsymbiont of <i>Amphicarpaea bracteata</i> collected in Johnson City, New York

Standards in Genomic Sciences
2015 | Journal article
Contributors: Tian, Rui; Parker, Matthew; Seshadri, Rekha; Reddy, T. B. K.; Markowitz, Victor; Ivanova, Natalia; Pati, Amrita; Woyke, Tanja; Baeshen, Mohammed N.; Baeshen, Nabih A. et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality permanent draft genome sequence of <i>Bradyrhizobium</i> sp Tv2a.2, a microsymbiont of <i>Tachigali versicolor</i> discovered in Barro Colorado Island of Panama

Standards in Genomic Sciences
2015 | Journal article
Contributors: Tian, Rui; Parker, Matthew; Seshadri, Rekha; Reddy, T. B. K.; Markowitz, Victor; Ivanova, Natalia; Pati, Amrita; Woyke, Tanja; Baeshen, Mohammed N.; Baeshen, Nabih A. et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality permanent draft genome sequence of <i>Ensifer medicae</i> strain WSM244, a microsymbiont isolated from <i>Medicago polymorpha</i> growing in alkaline soil

Standards in Genomic Sciences
2015 | Journal article
Contributors: Ardley, Julie; Tian, Rui; O'Hara, Graham; Seshadri, Rekha; Reddy, T. B. K.; Pati, Amrita; Woyke, Tanja; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality permanent draft genome sequence of <i>Ensifer meliloti</i> strain 4H41, an effective salt- and drought-tolerant microsymbiont of <i>Phaseolus vulgaris</i>

Standards in Genomic Sciences
2015 | Journal article
Contributors: Mhamdi, Ridha; Ardley, Julie; Tian, Rui; Seshadri, Rekha; Reddy, T. B. K.; Pati, Amrita; Woyke, Tanja; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality permanent draft genome sequence of <i>Rhizobium leguminosarum</i> bv. <i>viciae</i> strain GB30; an effective microsymbiont of <i>Pisum sativum</i> growing in Poland

Standards in Genomic Sciences
2015 | Journal article
Contributors: Mazur, Andrzej; De Meyer, Sofie E.; Tian, Rui; Wielbo, Jerzy; Zebracki, Kamil; Seshadri, Rekha; Reddy, T. B. K.; Markowitz, Victor; Ivanova, Natalia N.; Pati, Amrita et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality permanent draft genome sequence of <i>Rhizobium sullae</i> strain WSM1592; a <i>Hedysarum coronarium</i> microsymbiont from Sassari, Italy

Standards in Genomic Sciences
2015 | Journal article
Contributors: Yates, Ron; Howieson, John; De Meyer, Sofie E.; Tian, Rui; Seshadri, Rekha; Pati, Amrita; Woyke, Tanja; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos et al.
Source: check_circle
Web of Science Researcher Profile Sync

High-quality permanent draft genome sequence of the <i>Lebeckia</i> - nodulating <i>Burkholderia dilworthii</i> strain WSM3556<SUP>T</SUP>

Standards in Genomic Sciences
2015 | Journal article
Contributors: De Meyer, Sofie E.; Tian, Rui; Seshadri, Rekha; Ivanova, Natalia; Pati, Amrita; Markowitz, Victor; Woyke, Tanja; Yates, Ron; Howieson, John; Kyrpides, Nikos et al.
Source: check_circle
Web of Science Researcher Profile Sync
Items per page:
Page 1 of 2

Peer review (1 review for 1 publication/grant)

Review activity for Scientific data. (1)