Personal information

Emails & domains

Verified email addresses

Verified email domains

Websites & social links

Personal Website
Bluesky

Other IDs

Scopus Author ID: 51563211500
Scopus Author ID: 51563211500
Loop profile: 3288

Keywords

Systems Biology, Cognitive Systems, Informatics, Complexity Theory, Development and Evolution

Countries

United States

Activities

Collapse all

Employment (5)

University of Illinois Urbana-Champaign: Urbana, IL, US

2023-08-15 to present | Instructor (iSchool)
Employment
Source: Self-asserted source
Bradly Alicea

OpenWorm Foundation: Boston, MA, US

2016-02 to present | Senior Contributor
Employment
Source: Self-asserted source
Bradly Alicea

Orthogonal Research and Education Laboratory: Champaign, IL, US

2014-02 to present | Primary Investigator
Employment
Source: Self-asserted source
Bradly Alicea

University of Illinois, Urbana-Champaign: Urbana, IL, US

2014-11 to 2016-01 | Postdoctoral Associate (Crop Sciences)
Employment
Source: Self-asserted source
Bradly Alicea

MSU Technologies: East Lansing, MI, US

2011-01 to 2013-07 | Innovation Analyst (Technology Transfer)
Employment
Source: Self-asserted source
Bradly Alicea

Education and qualifications (5)

Mozilla Foundation: Mountain View, CA, US

2019-01-01 to 2019-05-01 | Open Leaders Program
Qualification
Source: Self-asserted source
Bradly Alicea

Michigan State University: East Lansing, MI, US

2009-05 to 2014-01 | PhD (Computational and Cell Biology) (Animal Science, Physiology)
Education
Source: Self-asserted source
Bradly Alicea

Michigan State University: East Lansing, MI, US

2003-09 to 2009-05 | PhD Certificate (CogSci) (Telecommunication, Information Studies, and Media)
Education
Source: Self-asserted source
Bradly Alicea

University of Florida: Gainesville, FL, US

1999-08 to 2002-08 | Masters (Anthropology)
Education
Source: Self-asserted source
Bradly Alicea

Michigan State University: East Lansing, MI, US

1991-08 to 1997-08 | Bachelors (Anthropology)
Education
Source: Self-asserted source
Bradly Alicea

Professional activities (2)

eLife Sciences Publications Ltd: Cambridge, Cambridgeshire, GB

2018-01-01 to present | Member (Early Career Ambassadors Group (ECAG))
Service
Source: Self-asserted source
Bradly Alicea

Society of Postdoctoral Scholars (SOPS) -- UIUC: Urbana, Illinois, US

2015-06-01 to 2016-06-01 | President (Beckman Institute)
Membership
Source: Self-asserted source
Bradly Alicea

Works (50 of 77)

Items per page:
Page 1 of 2

Allostasis Machines as Continuous Cognitive Modeling

2024 | Book chapter
DOI: 10.1007/978-3-031-76516-2_2
Contributors: Bradly Alicea
Source: check_circle
Crossref

Super-Performance: Sampling, Planning, and Ecological Information

2024 | Book chapter
DOI: 10.1007/978-3-031-50381-8_5
Contributors: Bradly Alicea
Source: check_circle
Crossref

The Molecular Basis of Differentiation Wave Activity in Embryogenesis

BioSystems
2024-09 | Journal article
DOI: 10.1016/j.biosystems.2024.105272
Contributors: Bradly Alicea; Suroush Bastani; Natalie K. Gordon; Susan Crawford-Young; Richard Gordon
Source: check_circle
Crossref

The Molecular Basis of Differentiation Wave Activity in Embryogenesis

2024-06-06 | Preprint
DOI: 10.1101/2024.06.04.597397
Contributors: Bradly Alicea; Surosh Bastani; Natalie K. Gordon; Susan Crawford-Young; Richard Gordon
Source: check_circle
Crossref

Allostasis Machines as Continuous Cognitive Modeling

2024-04-21 | Preprint
DOI: 10.31234/osf.io/q4jt2
Contributors: Bradly Alicea
Source: check_circle
Crossref

Embodied cognitive morphogenesis as a route to intelligent systems

Interface Focus
2023-06-06 | Journal article
DOI: 10.1098/rsfs.2022.0067
Contributors: Bradly Alicea; Richard Gordon; Jesse Parent
Source: check_circle
Crossref

Critical Periods and Developmental Neurosimulation

2023-03-10 | Preprint
DOI: 10.31234/osf.io/jsqcy
Contributors: Bradly Alicea
Source: check_circle
Crossref

Gibsonian Information: A New Approach to Quantitative Information

2022 | Book chapter
DOI: 10.1007/978-3-030-96993-6_2
Contributors: Bradly Alicea; Daniela Cialfi; Avery Lim; Jesse Parent
Source: check_circle
Crossref

Embodied Cognitive Morphogenesis as a Route to Intelligent Systems

2022-10-28 | Preprint
DOI: 10.31234/osf.io/8s3p2
Contributors: Bradly Alicea; Richard Gordon; Jesse Parent
Source: check_circle
Crossref

BraGenBrain emulation suite

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/u28qv
Contributors: Stefan Dvoretskii; Bradly Alicea; Bradly Alicea; Ankit Gupta; Ziyi Gong
Source: check_circle
DataCite

Contextual Geometric Structures

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/ynffr
Contributors: Bradly Alicea
Source: check_circle
DataCite

Data Repository for "Morphogenetic processes as data: Quantitative structure in the Drosophila eye imaginal disc" (BioSystems, doi:10.1016/j.biosystems.2018.10.005)

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/daujm
Contributors: Bradly Alicea
Source: check_circle
DataCite

Data Reuse for Discovery (Initiative)

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/w5nqt
Contributors: Bradly Alicea; Bhavik Nathwani; Huajin Wang; Sarvenaz Sarabipour; Marije Verhage
Source: check_circle
DataCite

DevoWorm

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/ng833
Contributors: Bradly Alicea; Richard Gordon; Thomas Portegys; Stephen Larson; George Mikhailovsky; Robert Stone
Source: check_circle
DataCite

Digital Bacillaria

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/ar8c3
Contributors: Bradly Alicea; Richard Gordon
Source: check_circle
DataCite

Embodied Intelligence Workshop Presentations from Orthogonal Lab

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/qehjt
Contributors: Bradly Alicea; Jesse Parent; Stefan Dvoretskii
Source: check_circle
DataCite

Embryo Networks and Connectomes in Caenorhabditis elegans

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/q9jvb
Contributors: Bradly Alicea
Source: check_circle
DataCite

Meta-Research: Creating clear and informative image-based figures for scientific publications

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/b5296
Contributors: Alberto Antonietti; Helena Jambor; Bradly Alicea; Tracy Audisio; Susann Auer; Vivek Bhardwaj; Steven J Burgess; Iuliia Ferling; Małgorzata Anna Gazda; Luke Hoeppner et al.
Source: check_circle
DataCite

Network Dynamics of Attention During a Naturalistic Behavioral Paradigm

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/435kr
Contributors: René Weber; Bradly Alicea; Richard Huskey; Klaus Mathiak
Source: check_circle
DataCite

Origins of the Embryo

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/k7vnj
Contributors: Bradly Alicea; Robert Stone
Source: check_circle
DataCite

Trajectories in Cognitive Science

Open Science Framework
2022-08-30 | Other
DOI: 10.17605/osf.io/jv96n
Contributors: Bradly Alicea; Jesse Parent; Anson Lim; Anusha Sharma
Source: check_circle
DataCite

Intelligence Offloading and the Neurosimulation of Developmental Agents

2022-08-26 | Preprint
DOI: 10.31234/osf.io/ykxd4
Contributors: Bradly Alicea; Angela Pang; Jesse Parent
Source: check_circle
Crossref

Neuromatch Academy: a 3-week, online summer school in computational neuroscience

Journal of Open Source Education
2022-03-31 | Journal article
DOI: 10.21105/jose.00118
Contributors: Bernard ’t Hart; Titipat Achakulvisut; Ayoade Adeyemi; Athena Akrami; Bradly Alicea; Alicia Alonso-Andres; Diego Alzate-Correa; Arash Ash; Jesus Ballesteros; Aishwarya Balwani et al.
Source: check_circle
Crossref

Complex Temporal Biology: Towards a Unified Multi-Scale Approach to Predict the Flow of Information

Integrative and Comparative Biology
2022-02-05 | Journal article
DOI: 10.1093/icb/icab163
Contributors: Bradly Alicea; Chongli Yuan
Source: check_circle
Crossref

Data-Theoretical Synthesis of the Early Developmental Process

Neuroinformatics
2022-01 | Journal article
DOI: 10.1007/s12021-020-09508-1
Contributors: Bradly Alicea; Richard Gordon; Thomas E. Portegys
Source: check_circle
Crossref

Gibsonian Information: an agent-based paradigm for quantitative information

2021-11-04 | Preprint
DOI: 10.31234/osf.io/b8kzw
Contributors: Bradly Alicea; daniela cialfi; Anson Lim; Jesse Parent
Source: check_circle
Crossref

Allostasis Machines: a model for understanding internal states and technological environments

2021-04-08 | Preprint
DOI: 10.31234/osf.io/h5ykd
Contributors: Bradly Alicea; daniela cialfi; Anson Lim; Jesse Parent
Source: check_circle
Crossref

Creating clear and informative image-based figures for scientific publications

PLOS Biology
2021-03-31 | Journal article
DOI: 10.1371/journal.pbio.3001161
Contributors: Helena Jambor; Jason R. Swedlow; Alberto Antonietti; Bradly Alicea; Tracy L. Audisio; Susann Auer; Vivek Bhardwaj; Steven J. Burgess; Iuliia Ferling; Małgorzata Anna Gazda et al.
Source: check_circle
Crossref

Neuromatch Academy: a 3-week, online summer school in computational neuroscience

2021-02-15 | Preprint
DOI: 10.31219/osf.io/9fp4v
Contributors: Bernard Marius 't Hart; Titipat Achakulvisut; Athena Akrami; Bradly Alicea; Ulrik Beierholm; Gunnar Blohm; Kathryn Bonnen; John S Butler; Brandon Caie; You Cheng et al.
Source: check_circle
Crossref

Cellular Reprogramming in Bursts and Phases

2021-02-02 | Preprint
DOI: 10.1101/2021.02.02.429448
Contributors: Bradly Alicea
Source: check_circle
Crossref

Periodicity in the embryo: emergence of order in space, diffusion of order in time

2021-01-08 | Preprint
DOI: 10.1101/2021.01.06.425581
Contributors: Bradly Alicea; Jesse Parent; Ujjwal Singh
Source: check_circle
Crossref

Developmental Incongruity as a Dynamical Representation of Heterochrony

2020-08-02 | Preprint
DOI: 10.1101/2020.07.31.231456
Contributors: Bradly Alicea
Source: check_circle
Crossref

Cultural, Emotional, and Associative Traits to Determine Literary Inclination

2020-05-13 | Other
DOI: 10.31234/osf.io/4xahc
Contributors: Hrishikesh Kulkarni; Bradly Alicea
Source: check_circle
Crossref

Building a Distributed Virtual Laboratory Adjacent to Academia

2020-04-30 | Other
DOI: 10.31222/osf.io/4k3z6
Contributors: Bradly Alicea
Source: check_circle
Crossref

Raising the Connectome: the emergence of neuronal activity and behavior inCaenorhabditis elegans

2020-01-07 | Preprint
DOI: 10.1101/2020.01.06.896308
Contributors: Bradly Alicea
Source: check_circle
Crossref

Towards a digital diatom: image processing and deep learning analysis ofBacillaria paradoxadynamic morphology

2019-12-23 | Preprint
DOI: 10.1101/2019.12.21.885897
Contributors: Bradly Alicea; Richard Gordon; Thomas Harbich; Ujjwal Singh; Asmit Singh; Vinay Varma
Source: check_circle
Crossref

Virtual Reality for Communication Neuroscience

2019-10-19 | Other
DOI: 10.31234/osf.io/e5jda
Contributors: Bradly Alicea
Source: check_circle
Crossref

Cultural association based on machine learning for team formation

2019-08-01 | Preprint
ARXIV: arXiv:1908.00234v1
Source: Self-asserted source
Bradly Alicea

Targeting in Virtual Workspaces: motor learning consolidates spatial memory for performance clusters

2019-04-28 | Other
DOI: 10.31234/osf.io/7z9q6
Contributors: Bradly Alicea; Corey Bohil; Frank Biocca; Charles Owen
Source: check_circle
Crossref

Network Dynamics of Attention During a Naturalistic Behavioral Paradigm.

Frontiers in human neuroscience
2018 | Journal article
DOI: 10.3389/fnhum.2018.00182
PMID: 29780313
PMC: PMC5946671
Contributors: Weber R; Alicea B; Huskey R; Mathiak K
Source: Self-asserted source
Bradly Alicea via Europe PubMed Central

Cell differentiation processes as spatial networks: Identifying four-dimensional structure in embryogenesis

Biosystems
2018-11 | Journal article
DOI: 10.1016/j.biosystems.2018.09.009
Contributors: Bradly Alicea; Richard Gordon
Source: check_circle
Crossref

Morphogenetic processes as data: Quantitative structure in the Drosophila eye imaginal disc

Biosystems
2018-11 | Journal article
DOI: 10.1016/j.biosystems.2018.10.005
Contributors: Bradly Alicea; Thomas E. Portegys; Diana Gordon; Richard Gordon
Source: check_circle
Crossref

Origins of the Embryo: Self-organization through cybernetic regulation

Biosystems
2018-11 | Journal article
DOI: 10.1016/j.biosystems.2018.08.005
Contributors: Robert Stone; Tom Portegys; George Mikhailovsky; Bradly Alicea
Source: check_circle
Crossref

The emergent connectome in Caenorhabditis elegans embryogenesis

Biosystems
2018-11 | Journal article
DOI: 10.1016/j.biosystems.2018.09.016
Contributors: Bradly Alicea
Source: check_circle
Crossref

OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans

Philosophical Transactions of the Royal Society B: Biological Sciences
2018-10-19 | Journal article
DOI: 10.1098/rstb.2017.0382
Contributors: Gopal P. Sarma; Chee Wai Lee; Tom Portegys; Vahid Ghayoomie; Travis Jacobs; Bradly Alicea; Matteo Cantarelli; Michael Currie; Richard C. Gerkin; Shane Gingell et al.
Source: check_circle
Crossref

Cell Differentiation Processes as Spatial Networks: identifying four-dimensional structure in embryogenesis

2018-09-20 | Other
DOI: 10.7287/peerj.preprints.26587v2
Contributors: Bradly J Alicea; Richard Gordon
Source: check_circle
Crossref

Morphogenetic processes as data: Quantitative structure in the Drosophila eye imaginal disc

bioRxiv
2018-08-19 | Journal article
DOI: 10.1101/395640
Source: Self-asserted source
Bradly Alicea

An Integrative Introduction to Human Augmentation Science

2018-04-26 | Preprint
ARXIV: arXiv:1804.10521v1
Source: Self-asserted source
Bradly Alicea

Cell Differentiation Processes as Spatial Networks: identifying four-dimensional structure in embryogenesis

2018-03-01 | Other
DOI: 10.7287/peerj.preprints.26587v1
Contributors: Bradly J Alicea; Richard Gordon
Source: check_circle
Crossref

Evaluating intraspecific variation and interspecific diversity: comparing humans and fish species

Thesis Commons
2017 | Working paper
DOI: 10.17605/osf.io/45bf2
Contributors: Bradly Alicea
Source: check_circle
DataCite
Items per page:
Page 1 of 2

Peer review (6 reviews for 2 publications/grants)

Review activity for Biosystems. (5)
Review activity for PloS one. (1)
How many people are using ORCID?