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Works (33)

Recapitulating the adenoma–carcinoma sequence by selection of four spontaneous oncogenic mutations in mismatch-repair-deficient human colon organoids

Nature Cancer
2024-11-01 | Journal article
Contributors: Tomohiro Mizutani; Matteo Boretto; Sangho Lim; Jarno Drost; Diego Montiel González; Rurika Oka; Maarten H. Geurts; Harry Begthel; Jeroen Korving; Johan H. van Es et al.
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Crossref

Data from Elevated Mutational Age in Blood of Children Treated for Cancer Contributes to Therapy-Related Myeloid Neoplasms

2023-04-04 | Preprint
Contributors: Eline J.M. Bertrums; Axel K.M. Rosendahl Huber; Jurrian K. de Kanter; Arianne M. Brandsma; Anaïs J.C.N. van Leeuwen; Mark Verheul; Marry M. van den Heuvel-Eibrink; Rurika Oka; Markus J. van Roosmalen; Hester A. de Groot-Kruseman et al.
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Crossref

Data from Elevated Mutational Age in Blood of Children Treated for Cancer Contributes to Therapy-Related Myeloid Neoplasms

2023-04-04 | Preprint
Contributors: Eline J.M. Bertrums; Axel K.M. Rosendahl Huber; Jurrian K. de Kanter; Arianne M. Brandsma; Anaïs J.C.N. van Leeuwen; Mark Verheul; Marry M. van den Heuvel-Eibrink; Rurika Oka; Markus J. van Roosmalen; Hester A. de Groot-Kruseman et al.
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Crossref

Supplementary Figure from Elevated Mutational Age in Blood of Children Treated for Cancer Contributes to Therapy-Related Myeloid Neoplasms

2023-04-04 | Preprint
Contributors: Eline J.M. Bertrums; Axel K.M. Rosendahl Huber; Jurrian K. de Kanter; Arianne M. Brandsma; Anaïs J.C.N. van Leeuwen; Mark Verheul; Marry M. van den Heuvel-Eibrink; Rurika Oka; Markus J. van Roosmalen; Hester A. de Groot-Kruseman et al.
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Crossref

Supplementary Figure from Elevated Mutational Age in Blood of Children Treated for Cancer Contributes to Therapy-Related Myeloid Neoplasms

2023-04-04 | Preprint
Contributors: Eline J.M. Bertrums; Axel K.M. Rosendahl Huber; Jurrian K. de Kanter; Arianne M. Brandsma; Anaïs J.C.N. van Leeuwen; Mark Verheul; Marry M. van den Heuvel-Eibrink; Rurika Oka; Markus J. van Roosmalen; Hester A. de Groot-Kruseman et al.
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Crossref

Supplementary Table from Elevated Mutational Age in Blood of Children Treated for Cancer Contributes to Therapy-Related Myeloid Neoplasms

2023-04-04 | Preprint
Contributors: Eline J.M. Bertrums; Axel K.M. Rosendahl Huber; Jurrian K. de Kanter; Arianne M. Brandsma; Anaïs J.C.N. van Leeuwen; Mark Verheul; Marry M. van den Heuvel-Eibrink; Rurika Oka; Markus J. van Roosmalen; Hester A. de Groot-Kruseman et al.
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Crossref

Supplementary Table from Elevated Mutational Age in Blood of Children Treated for Cancer Contributes to Therapy-Related Myeloid Neoplasms

2023-04-04 | Preprint
Contributors: Eline J.M. Bertrums; Axel K.M. Rosendahl Huber; Jurrian K. de Kanter; Arianne M. Brandsma; Anaïs J.C.N. van Leeuwen; Mark Verheul; Marry M. van den Heuvel-Eibrink; Rurika Oka; Markus J. van Roosmalen; Hester A. de Groot-Kruseman et al.
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Crossref

Elevated Mutational Age in Blood of Children Treated for Cancer Contributes to Therapy-Related Myeloid Neoplasms

Cancer Discovery
2022-07-14 | Journal article
Contributors: Eline J.M. Bertrums; Axel K.M. Rosendahl Huber; Jurrian K. de Kanter; Arianne M. Brandsma; Anaïs J.C.N. van Leeuwen; Mark Verheul; Marry M. van den Heuvel-Eibrink; Rurika Oka; Markus J. van Roosmalen; Hester A. de Groot-Kruseman et al.
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Crossref

MutationalPatterns: the one stop shop for the analysis of mutational processes.

BMC genomics
2022-02-15 | Journal article
Source: Self-asserted source
Rurika Oka
grade
Preferred source (of 2)‎

Human induced pluripotent stem cells display a similar mutation burden as embryonic pluripotent cells <i>in vivo</i>.

iScience
2022-01-06 | Journal article
Source: Self-asserted source
Rurika Oka
grade
Preferred source (of 2)‎

Molecular characterization of Barrett’s esophagus at single-cell resolution

Proceedings of the National Academy of Sciences
2021-11-23 | Journal article
Part of ISSN: 0027-8424
Part of ISSN: 1091-6490
Source: Self-asserted source
Rurika Oka
grade
Preferred source (of 2)‎

MutationalPatterns: The one stop shop for the analysis of mutational processes

2021-11-02 | Preprint
Contributors: Freek Manders; Arianne M. Brandsma; Jurrian de Kanter; Mark Verheul; Rurika Oka; Markus J. van Roosmalen; Bastiaan van der Roest; Arne van Hoeck; Edwin Cuppen; Ruben van Boxtel
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Crossref

Evaluating CRISPR-based prime editing for cancer modeling and CFTR repair in organoids

Life Science Alliance
2021-10 | Journal article
Part of ISSN: 2575-1077
Source: Self-asserted source
Rurika Oka
grade
Preferred source (of 2)‎

Antiviral treatment causes a unique mutational signature in cancers of transplantation recipients.

Cell stem cell
2021-09-07 | Journal article
Source: Self-asserted source
Rurika Oka

Defects in 8-oxo-guanine repair pathway cause high frequency of C > A substitutions in neuroblastoma.

Proceedings of the National Academy of Sciences of the United States of America
2021-09-01 | Journal article
Source: Self-asserted source
Rurika Oka
grade
Preferred source (of 2)‎

In vivo adenine base editing of PCSK9 in macaques reduces LDL cholesterol levels

Nature Biotechnology
2021-08 | Journal article
Part of ISSN: 1087-0156
Part of ISSN: 1546-1696
Source: Self-asserted source
Rurika Oka
grade
Preferred source (of 2)‎

Mutation Signatures of Pediatric Acute Myeloid Leukemia and Normal Blood Progenitors Associated with Differential Patient Outcomes

Blood Cancer Discovery
2021-07-02 | Journal article
Part of ISSN: 2643-3230
Part of ISSN: 2643-3249
Source: Self-asserted source
Rurika Oka

Patient-derived organoids model cervical tissue dynamics and viral oncogenesis in cervical cancer.

Cell stem cell
2021-04-08 | Journal article
Source: Self-asserted source
Rurika Oka

In vivo cytidine base editing of hepatocytes without detectable off-target mutations in RNA and DNA

Nature biomedical engineering
2021-01-25 | Journal article
Source: Self-asserted source
Rurika Oka
grade
Preferred source (of 2)‎

Prime editing for functional repair in patient-derived disease models

Nature Communications
2020-10-23 | Journal article
Part of ISSN: 2041-1723
Source: Self-asserted source
Rurika Oka
grade
Preferred source (of 2)‎

An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity

Nature Communications
2020-03-11 | Journal article
Part of ISSN: 2041-1723
Source: Self-asserted source
Rurika Oka
grade
Preferred source (of 2)‎

CRISPR-Based Adenine Editors Correct Nonsense Mutations in a Cystic Fibrosis Organoid Biobank

Cell Stem Cell
2020-02 | Journal article
Part of ISSN: 1934-5909
Source: Self-asserted source
Rurika Oka

Characterizing Mutational Load and Clonal Composition of Human Blood

Journal of Visualized Experiments
2019-07-11 | Journal article
Part of ISSN: 1940-087X
Source: Self-asserted source
Rurika Oka

Probing the Tumor Suppressor Function of BAP1 in CRISPR-Engineered Human Liver Organoids.

Cell stem cell
2019-05-23 | Journal article
Source: Self-asserted source
Rurika Oka

Oral Mucosal Organoids as a Potential Platform for Personalized Cancer Therapy.

Cancer discovery
2019-05-03 | Journal article
Source: Self-asserted source
Rurika Oka

Generating transgenic plants with single-copy insertions using BIBAC-GW binary vector

Journal of Visualized Experiments
2018 | Journal article
EID:

2-s2.0-85044781763

Contributors: Tark-Dame, M.; Weber, B.; De Sain, M.; Anggoro, D.T.; Bader, R.; Walmsley, A.; Oka, R.; Stam, M.
Source: Self-asserted source
Rurika Oka via Scopus - Elsevier

Somatic Mutations Reveal Lineage Relationships and Age-Related Mutagenesis in Human Hematopoiesis.

Cell reports
2018-11-01 | Journal article
Source: Self-asserted source
Rurika Oka
grade
Preferred source (of 2)‎

Parental DNA methylation states are associated with heterosis in epigenetic hybrids.

Plant physiology
2017-12 | Journal article
Contributors: Lauss K; Wardenaar R; Oka R; van Hulten MHA; Guryev V; Keurentjes JJB; Stam M; Johannes F
Source: Self-asserted source
Rurika Oka via Europe PubMed Central
grade
Preferred source (of 3)‎

Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize.

2017-07 | Journal article
Contributors: Oka R; Zicola J; Weber B; Anderson SN; Hodgman C; Gent JI; Wesselink JJ; Springer NM; Hoefsloot HCJ; Turck F et al.
Source: Self-asserted source
Rurika Oka via Europe PubMed Central
grade
Preferred source (of 2)‎

BIBAC-GW-based vectors for generating reporter lines for site-specific genome editing in planta.

2016-12 | Journal article
Contributors: Anggoro DT; Tark-Dame M; Walmsley A; Oka R; de Sain M; Stam M
Source: Self-asserted source
Rurika Oka via Europe PubMed Central
grade
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Plant Enhancers: A Call for Discovery.

2016-11 | Journal article
Contributors: Weber B; Zicola J; Oka R; Stam M
Source: Self-asserted source
Rurika Oka via Europe PubMed Central
grade
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Investigation of the influence of molecular topology on ligand binding.

2013-03 | Journal article
Contributors: Oka R; Engkvist O; Chen H
Source: Self-asserted source
Rurika Oka via Europe PubMed Central
grade
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An Investigation of the Relationship Between Molecular Topology and CYP3A4 Inhibition for Drug-like Compounds.

2012-10 | Journal article
Contributors: Oka R; Engkvist O; Chen H
Source: Self-asserted source
Rurika Oka via Europe PubMed Central
grade
Preferred source (of 2)‎