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Works (11)

Detecting Differential Alternative Splicing in Mass Spectrometry-based Proteomics Data

2023-09-22 | Preprint
DOI: 10.1101/2023.09.19.558203
Contributors: Constantin Ammar; Gergely Csaba; Armin Hadziahmetovic; Catherine G. Vasilopoulou; Markus Gruber; Matthias Mann; Ralf Zimmer
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Robust dimethyl‐based multiplex‐DIA doubles single‐cell proteome depth via a reference channel

Molecular Systems Biology
2023-09-12 | Journal article
DOI: 10.15252/msb.202211503
Contributors: Marvin Thielert; Ericka CM Itang; Constantin Ammar; Florian A Rosenberger; Isabell Bludau; Lisa Schweizer; Thierry M Nordmann; Patricia Skowronek; Maria Wahle; Wen‐Feng Zeng et al.
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Accurate Label-Free Quantification by directLFQ to Compare Unlimited Numbers of Proteomes

Molecular & Cellular Proteomics
2023-07 | Journal article
DOI: 10.1016/j.mcpro.2023.100581
Contributors: Constantin Ammar; Julia Patricia Schessner; Sander Willems; André C. Michaelis; Matthias Mann
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Accurate label-free quantification by directLFQ to compare unlimited numbers of proteomes

2023-02-19 | Preprint
DOI: 10.1101/2023.02.17.528962
Contributors: Constantin Ammar; Julia Patricia Schessner; Sander Willems; André C. Michaelis; Matthias Mann
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Analysis of proteome adaptation reveals a key role of the bacterial envelope in starvation survival

Molecular Systems Biology
2022-12 | Journal article
DOI: 10.15252/msb.202211160
Contributors: Severin Schink; Constantin Ammar; Yu‐Fang Chang; Ralf Zimmer; Markus Basan
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Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome

2022-12-03 | Preprint
DOI: 10.1101/2022.12.03.518957
Contributors: Florian A. Rosenberger; Marvin Thielert; Maximilian T. Strauss; Constantin Ammar; Sophia C. Mädler; Lisa Schweizer; Andreas Metousis; Patricia Skowronek; Maria Wahle; Janine Gote-Schniering et al.
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Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbation

Molecular Systems Biology
2022-03 | Journal article
DOI: 10.15252/msb.202110798
Contributors: Andreas‐David Brunner; Marvin Thielert; Catherine Vasilopoulou; Constantin Ammar; Fabian Coscia; Andreas Mund; Ole B Hoerning; Nicolai Bache; Amalia Apalategui; Markus Lubeck et al.
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AlphaPept, a modern and open framework for MS-based proteomics

2021-07-26 | Other
DOI: 10.1101/2021.07.23.453379
Contributors: Maximilian T. Strauss; Isabell Bludau; Wen-Feng Zeng; Eugenia Voytik; Constantin Ammar; Julia Schessner; Rajesh Ilango; Michelle Gill; Florian Meier; Sander Willems et al.
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EmpiReS: Differential Analysis of Gene Expression and Alternative Splicing

2020-08-24 | Preprint
DOI: 10.1101/2020.08.23.234237
Contributors: Gergely Csaba; Evi Berchtold; Armin Hadziahmetovic; Markus Gruber; Constantin Ammar; Ralf Zimmer
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MS-EmpiRe Utilizes Peptide-level Noise Distributions for Ultra-sensitive Detection of Differentially Expressed Proteins

Molecular & Cellular Proteomics
2019-09-24 | Journal article
DOI: 10.1074/mcp.RA119.001509
Contributors: Constantin Ammar; Markus Gruber; Gergely Csaba; Ralf Zimmer
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Multi-Reference Spectral Library Yields Almost Complete Coverage of Heterogeneous LC-MS/MS Data Sets

Journal of Proteome Research
2019-04-05 | Journal article
DOI: 10.1021/acs.jproteome.8b00819
Contributors: Constantin Ammar; Evi Berchtold; Gergely Csaba; Andreas Schmidt; Axel Imhof; Ralf Zimmer
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