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University College London Cancer Institute

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Scopus Author ID: 56662366700
Scopus Author ID: 7404017563

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United Kingdom

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Employment (5)

University College London: London, London, GB

2019-10-01 to present | Professor of Computational Biology (UCL Cancer Institute)
Employment
Source: Self-asserted source
Jasmin Fisher

University of Cambridge: Cambridge, Cambridgeshire, GB

2013-09-01 to 2019-09-30 | Reader in Systems Biology (Department of Biochemistry)
Employment
Source: Self-asserted source
Jasmin Fisher

Microsoft Research Ltd: Cambridge, Cambridgeshire, GB

2007-08-06 to 2019-09-30 | Principal Researcher
Employment
Source: Self-asserted source
Jasmin Fisher

EPFL: Lausanne, CH

2004 to 2007 | Post-doc (School of Computer Science)
Employment
Source: Self-asserted source
Jasmin Fisher

Weizmann Institute of Science : Rehovot, IL

2003 to 2004 | Post-doc (Department of Computer Science)
Employment
Source: Self-asserted source
Jasmin Fisher

Education and qualifications (3)

Weizmann Institute of Science : Rehovot, IL

1998 to 2003 | PhD in Neuroimmunology (Department of Neurobiology)
Education
Source: Self-asserted source
Jasmin Fisher

Ben-Gurion University : Beer-Sheva, IL

1996 to 1998 | MSc in Biophysics & Physiology (Department of Physiology)
Education
Source: Self-asserted source
Jasmin Fisher

Ben-Gurion University : Beer-Sheva, IL

1994 to 1996 | BSc in Biology
Education
Source: Self-asserted source
Jasmin Fisher

Professional activities (6)

European Association for Cancer Research: (EACR), GB

2019 to present
Membership
Source: Self-asserted source
Jasmin Fisher

Mark Foundation Institute for Integrated Cancer Medicine: Cambridge, GB

2017 to present
Membership
Source: Self-asserted source
Jasmin Fisher

American Association for Cancer Research: (AACR), US

2014 to present
Membership
Source: Self-asserted source
Jasmin Fisher

Cancer Research UK Cambridge Centre: Cambridge, GB

2012 to present
Membership
Source: Self-asserted source
Jasmin Fisher

Royal Society of Biology: London, GB

2018 | Fellow of the Royal Society of Biology
Distinction
Source: Self-asserted source
Jasmin Fisher

University of Cambridge Trinity Hall: Cambridge, GB

2016 | Fellow
Distinction
Source: Self-asserted source
Jasmin Fisher

Works (50 of 68)

Items per page:
Page 1 of 2

Localized immune surveillance of primary melanoma in the skin deciphered through executable modeling

Science Advances
2023-04-14 | Journal article
DOI: 10.1126/sciadv.add1992
Contributors: Rowan Howell; James Davies; Matthew A. Clarke; Anna Appios; Inês Mesquita; Yashoda Jayal; Ben Ringham-Terry; Isabel Boned Del Rio; Jasmin Fisher; Clare L. Bennett
Source: check_circle
Crossref

HOXA9 has the hallmarks of a biological switch with implications in blood cancers

Nature Communications
2022-10-03 | Journal article
DOI: 10.1038/s41467-022-33189-w
Contributors: Laure Talarmain; Matthew A. Clarke; David Shorthouse; Lilia Cabrera-Cosme; David G. Kent; Jasmin Fisher; Benjamin A. Hall
Source: check_circle
Crossref

Community voices: policy proposals to promote inclusion in academia through the lens of women in science

Nature Communications
2022-07-13 | Journal article
DOI: 10.1038/s41467-022-31616-6
Contributors: Sarah A. Teichmann; Muzlifah Haniffa; Jasmin Fisher
Source: check_circle
Crossref

Executable cancer models: successes and challenges

Nature Reviews Cancer
2020-06-27 | Journal article
DOI: 10.1038/s41568-020-0258-x
Contributors: Matthew A. Clarke; Jasmin Fisher
Source: check_circle
Crossref

Rethinking drug design in the artificial intelligence era

Nature Reviews Drug Discovery
2020-05 | Journal article
DOI: 10.1038/s41573-019-0050-3
Contributors: Petra Schneider; W. Patrick Walters; Alleyn T. Plowright; Norman Sieroka; Jennifer Listgarten; Robert A. Goodnow, Jr.; Jasmin Fisher; Johanna M. Jansen; José S. Duca; Thomas S. Rush et al.
Source: check_circle
Crossref

Using State Space Exploration to Determine How Gene Regulatory Networks Constrain Mutation Order in Cancer Evolution

Computational Biology
2019 | Book chapter
DOI: 10.1007/978-3-030-17297-8_5
Part of ISBN: 9783030172961
Part of ISBN: 9783030172978
Part of ISSN: 1568-2684
Part of ISSN: 2662-2432
Source: Self-asserted source
Jasmin Fisher

Heterogeneity of Myc expression in breast cancer exposes pharmacological vulnerabilities revealed through executable mechanistic modeling

Proceedings of the National Academy of Sciences
2019-10-14 | Journal article
DOI: 10.1073/pnas.1903485116
Part of ISSN: 0027-8424
Part of ISSN: 1091-6490
Source: Self-asserted source
Jasmin Fisher

A toolbox for discrete modelling of cell signalling dynamics

Integrative Biology (United Kingdom)
2018 | Journal article
DOI: 10.1039/c8ib00026c
EID:

2-s2.0-85048826100
Contributors: Paterson, Y.Z.; Shorthouse, D.; Pleijzier, M.W.; Piterman, N.; Bendtsen, C.; Hall, B.A.; Fisher, J.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

SCNS: A graphical tool for reconstructing executable regulatory networks from single-cell genomic data

BMC Systems Biology
2018 | Journal article
DOI: 10.1186/s12918-018-0581-y
EID:

2-s2.0-85047524033
Contributors: Woodhouse, S.; Piterman, N.; Wintersteiger, C.M.; Göttgens, B.; Fisher, J.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data

Cell Reports
2018 | Journal article
DOI: 10.1016/j.celrep.2018.08.085
EID:

2-s2.0-85053290861
Contributors: Köksal, A.S.; Beck, K.; Cronin, D.R.; McKenna, A.; Camp, N.D.; Srivastava, S.; MacGilvray, M.E.; Bodík, R.; Wolf-Yadlin, A.; Fraenkel, E. et al.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Visible Machine Learning for Biomedicine

Cell
2018 | Journal article
DOI: 10.1016/j.cell.2018.05.056
EID:

2-s2.0-85048162030
Contributors: Yu, M.K.; Ma, J.; Fisher, J.; Kreisberg, J.F.; Raphael, B.J.; Ideker, T.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Bringing LTL model checking to biologists

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2017 | Book
DOI: 10.1007/978-3-319-52234-0_1
EID:

2-s2.0-85010679802
Contributors: Ahmed, Z.; Benque, D.; Berezin, S.; Dahl, A.C.E.; Fisher, J.; Hall, B.A.; Ishtiaq, S.; Nanavati, J.; Piterman, N.; Riechert, M. et al.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data

2017-10 | Other
DOI: 10.1101/209676
Contributors: Ali Sinan Köksal; Kirsten Beck; Dylan R. Cronin; Aaron McKenna; Nathan D. Camp; Saurabh Srivastava; Matthew E. MacGilvray; Rastislav Bodík; Alejandro Wolf-Yadlin; Ernest Fraenkel et al.
Source: Self-asserted source
Jasmin Fisher via Crossref Metadata Search
grade
Preferred source (of 2)‎

Program synthesis meets deep learning for decoding regulatory networks

Current Opinion in Systems Biology
2017-08 | Journal article
DOI: 10.1016/j.coisb.2017.07.006
Part of ISSN: 2452-3100
Contributors: Jasmin Fisher; Steven Woodhouse
Source: Self-asserted source
Jasmin Fisher via Crossref Metadata Search
grade
Preferred source (of 2)‎

Cell-Specific Computational Modeling of the PIM Pathway in Acute Myeloid Leukemia.

Cancer research
2017-02 | Journal article
DOI: 10.1158/0008-5472.can-16-1578
PMID: 27965317
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central
grade
Preferred source (of 2)‎

Linear temporal logic for biologists in BMA

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2016 | Book
EID:

2-s2.0-84988524906
Contributors: Hall, B.A.; Piterman, N.; Fisher, J.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Processing, visualising and reconstructing network models from single-cell data

Immunology and Cell Biology
2016 | Journal article
DOI: 10.1038/icb.2015.102
EID:

2-s2.0-84961151515
Contributors: Woodhouse, S.; Moignard, V.; Göttgens, B.; Fisher, J.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

BTR: training asynchronous Boolean models using single-cell expression data.

BMC bioinformatics
2016-09 | Journal article
DOI: 10.1186/s12859-016-1235-y
PMID: 27600248
PMC: PMC5012073
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central
grade
Preferred source (of 2)‎

Synthesising executable gene regulatory networks from single-cell gene expression data

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2015 | Book
DOI: 10.1007/978-3-319-21690-4_38
EID:

2-s2.0-84951188597
Contributors: Fisher, J.; Köksal, A.S.; Piterman, N.; Woodhouse, S.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Emergent stem cell homeostasis in the C. elegans germline is revealed by hybrid modeling.

Biophysical journal
2015-07 | Journal article
DOI: 10.1016/j.bpj.2015.06.007
PMID: 26200879
PMC: PMC4621618
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central
grade
Preferred source (of 2)‎

Decoding the regulatory network of early blood development from single-cell gene expression measurements.

Nature biotechnology
2015-03 | Journal article
DOI: 10.1038/nbt.3154
PMID: 25664528
PMC: PMC4374163
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central
grade
Preferred source (of 2)‎

Drug target optimization in chronic myeloid leukemia using innovative computational platform.

Scientific reports
2015-02 | Journal article
DOI: 10.1038/srep08190
PMID: 25644994
PMC: PMC4650822
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central
grade
Preferred source (of 2)‎

Emergent Behaviours of Stem Cells in Organogenesis Demonstrated by Hybrid Modelling

Biophysical Journal
2015-01 | Journal article
DOI: 10.1016/j.bpj.2014.11.2002
Part of ISSN: 0006-3495
Contributors: Benjamin A. Hall; Nir Piterman; Alex Hajnal; Jasmin Fisher
Source: Self-asserted source
Jasmin Fisher via Crossref Metadata Search

Finding instability in biological models

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2014 | Book
DOI: 10.1007/978-3-319-08867-9_24
EID:

2-s2.0-84904816762
Contributors: Cook, B.; Fisher, J.; Hall, B.A.; Ishtiaq, S.; Juniwal, G.; Piterman, N.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Model checking in biology

A Systems Theoretic Approach to Systems and Synthetic Biology I: Models and System Characterizations
2014 | Book
DOI: 10.1007/978-94-017-9041-3_10
EID:

2-s2.0-84927665739
Contributors: Fisher, J.; Piterman, N.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Toward synthesizing executable models in biology.

Frontiers in bioengineering and biotechnology
2014 | Journal article
DOI: 10.3389/fbioe.2014.00075
PMID: 25566538
PMC: PMC4271700
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central
grade
Preferred source (of 2)‎

Single-cell analyses of regulatory network perturbations using enhancer-targeting TALEs suggest novel roles for PU.1 during haematopoietic specification.

Development (Cambridge, England)
2014-10 | Journal article
DOI: 10.1242/dev.115709
PMID: 25252941
PMC: PMC4197694
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central
grade
Preferred source (of 2)‎

Logic programming to predict cell fate patterns and retrodict genotypes in organogenesis.

Journal of the Royal Society, Interface
2014-09 | Journal article
DOI: 10.1098/rsif.2014.0245
PMID: 24966232
PMC: PMC4233684
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central
grade
Preferred source (of 2)‎

Predicting and Retrodicting Fate Patterns in C. elegans Vulval Development using Logic Programming

Biophysical Journal
2014-01 | Journal article
DOI: 10.1016/j.bpj.2013.11.2129
Part of ISSN: 0006-3495
Contributors: Benjamin A. Hall; Ethan Jackson; Alex Hajnal; Jasmin Fisher
Source: Self-asserted source
Jasmin Fisher via Crossref Metadata Search

At the interface of biology and computation

Conference on Human Factors in Computing Systems - Proceedings
2013 | Conference paper
DOI: 10.1145/2470654.2470725
EID:

2-s2.0-84877986310
Contributors: Taylor, A.S.; Piterman, N.; Ishtiaq, S.; Fisher, J.; Cook, B.; Cockerton, C.; Bourton, S.; Benque, D.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Cellular resolution models for even skipped regulation in the entire Drosophila embryo

eLife
2013 | Journal article
DOI: 10.7554/eLife.00522.001
EID:

2-s2.0-84881520887
Contributors: Ilsley, G.R.; Fisher, J.; Apweiler, R.; DePace, A.H.; Luscombe, N.M.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Cellular resolution models for even skipped regulation in the entire Drosophila embryo.

eLife
2013 | Journal article
DOI: 10.7554/elife.00522
PMID: 23930223
PMC: PMC3736529
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central

Model-checking signal transduction networks through decreasing reachability sets

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2013 | Book
DOI: 10.1007/978-3-642-39799-8_5
EID:

2-s2.0-84881173183
Contributors: Claessen, K.; Fisher, J.; Ishtiaq, S.; Piterman, N.; Wang, Q.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Synthesis of biological models from mutation experiments

ACM SIGPLAN Notices
2013 | Journal article
DOI: 10.1145/2480359.2429125
EID:

2-s2.0-84877885196
Contributors: Köksal, A.S.; Pu, Y.; Srivastava, S.; Bodík, R.; Fisher, J.; Piterman, N.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Synthesis of biological models from mutation experiments

Conference Record of the Annual ACM Symposium on Principles of Programming Languages
2013 | Conference paper
DOI: 10.1145/2429069.2429125
EID:

2-s2.0-84874151469
Contributors: Köksal, A.S.; Pu, Y.; Srivastava, S.; Bodík, R.; Fisher, J.; Piterman, N.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Transcriptional hierarchies regulating early blood cell development

Blood Cells, Molecules, and Diseases
2013 | Journal article
DOI: 10.1016/j.bcmd.2013.07.007
EID:

2-s2.0-84886240466
Contributors: Moignard, V.; Woodhouse, S.; Fisher, J.; Göttgens, B.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

WormQTL--public archive and analysis web portal for natural variation data in Caenorhabditis spp.

Nucleic acids research
2013-01 | Journal article
DOI: 10.1093/nar/gks1124
PMID: 23180786
PMC: PMC3531126
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central
grade
Preferred source (of 2)‎

A dynamic physical model of cell migration, differentiation and apoptosis in caenorhabditis elegans

Advances in Experimental Medicine and Biology
2012 | Book
DOI: 10.1007/978-1-4419-7210-1_12
EID:

2-s2.0-84855945545
Contributors: Beyer, A.; Eberhard, R.; Piterman, N.; Hengartner, M.O.; Hajnal, A.; Fisher, J.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

BMA: Visual tool for modeling and analyzing biological networks

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2012 | Book
DOI: 10.1007/978-3-642-31424-7_50
EID:

2-s2.0-84864053615
Contributors: Benque, D.; Bourton, S.; Cockerton, C.; Cook, B.; Fisher, J.; Ishtiaq, S.; Piterman, N.; Taylor, A.; Vardi, M.Y.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Cell-cycle regulation of NOTCH signaling during C. elegans vulval development.

Molecular systems biology
2012 | Journal article
DOI: 10.1038/msb.2012.51
PMID: 23047528
PMC: PMC3501274
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central
grade
Preferred source (of 2)‎

Predictive modelling of stem cell differentiation and apoptosis in C. elegans

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2012 | Book
DOI: 10.1007/978-3-642-28792-3_14
EID:

2-s2.0-84859123318
Contributors: Beyer, A.; Eberhard, R.; Piterman, N.; Hengartner, M.O.; Hajnal, A.; Fisher, J.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Static network structure can be used to model the phenotypic effects of perturbations in regulatory networks

Bioinformatics
2012 | Journal article
DOI: 10.1093/bioinformatics/bts517
EID:

2-s2.0-84868007855
Contributors: Feiglin, A.; Hacohen, A.; Sarusi, A.; Fisher, J.; Unger, R.; Ofran, Y.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Biology as reactivity

Communications of the ACM
2011 | Journal article
DOI: 10.1145/2001269.2001289
EID:

2-s2.0-80053483976
Contributors: Fisher, J.; Harel, D.; Henzinger, T.A.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Dynamic reactive modules

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2011 | Book
DOI: 10.1007/978-3-642-23217-6_27
EID:

2-s2.0-80052893548
Contributors: Fisher, J.; Henzinger, T.A.; Nickovic, D.; Piterman, N.; Singh, A.V.; Vardi, M.Y.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Model Checking Cell Fate Decisions

Model Checking Software
2011 | Other
DOI: 10.1007/978-3-642-22306-8_1
Part of ISBN: 9783642223051
Part of ISSN: 0302-9743
Contributors: Jasmin Fisher
Source: Self-asserted source
Jasmin Fisher via Crossref Metadata Search
grade
Preferred source (of 2)‎

Proving stabilization of biological systems

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2011 | Book
DOI: 10.1007/978-3-642-18275-4_11
EID:

2-s2.0-79251538979
Contributors: Cook, B.; Fisher, J.; Krepska, E.; Piterman, N.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

The only way is up

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2011 | Book
DOI: 10.1007/978-3-642-21437-0_3
EID:

2-s2.0-79959982992
Contributors: Fisher, J.; Piterman, N.; Vardi, M.Y.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier

Cell cycle control of NOTCH signalling during C. elegans vulval development

Developmental Biology
2011-08 | Journal article
DOI: 10.1016/j.ydbio.2011.05.226
Part of ISSN: 0012-1606
Contributors: Stephanie Nusser-Stein; Magdalene Adamczyk; Antje Beyer; Ivo Rimann; Nir Piterman; Jasmin Fisher; Alex Hajnal
Source: Self-asserted source
Jasmin Fisher via Crossref Metadata Search

The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in Saccharomyces cerevisiae.

Bioinformatics (Oxford, England)
2011-07 | Journal article
DOI: 10.1093/bioinformatics/btr211
PMID: 21685082
PMC: PMC3117362
Source: Self-asserted source
Jasmin Fisher via Europe PubMed Central
grade
Preferred source (of 2)‎

Mechanistic insights into metabolic disturbance during type-2 diabetes and obesity using qualitative networks

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2010 | Book
DOI: 10.1007/978-3-642-11712-1_4
EID:

2-s2.0-77950319213
Contributors: Beyer, A.; Thomason, P.; Li, X.; Scott, J.; Fisher, J.
Source: Self-asserted source
Jasmin Fisher via Scopus - Elsevier
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